View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9039_low_5 (Length: 353)

Name: NF9039_low_5
Description: NF9039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9039_low_5
NF9039_low_5
[»] chr4 (9 HSPs)
chr4 (26-78)||(45175511-45175563)
chr4 (190-344)||(45078021-45078172)
chr4 (190-344)||(45089343-45089494)
chr4 (276-335)||(44669005-44669064)
chr4 (276-335)||(44688281-44688340)
chr4 (195-242)||(44669104-44669151)
chr4 (195-242)||(44688380-44688427)
chr4 (278-335)||(45095774-45095831)
chr4 (195-243)||(45095863-45095911)
[»] chr8 (2 HSPs)
chr8 (190-251)||(24042188-24042249)
chr8 (194-243)||(42699947-42699996)
[»] chr2 (3 HSPs)
chr2 (198-251)||(24001890-24001943)
chr2 (266-326)||(20596485-20596545)
chr2 (266-326)||(20603968-20604028)
[»] chr1 (2 HSPs)
chr1 (278-329)||(42414523-42414574)
chr1 (198-242)||(44005194-44005238)
[»] chr7 (1 HSPs)
chr7 (278-322)||(41681800-41681844)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 45175511 - 45175563
Alignment:
Q  26 tactcactcatctaagtttgaattcataatttttaactcattcaacccttgat 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45175511 tactcactcatctaagtttgaattcataatttttaactcattcaacccttgat 45175563  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 344
Target Start/End: Complemental strand, 45078172 - 45078021
Alignment:
Q  190 tcagattgtggaatccttctatcaaatatgaatccaaaacatctccaaccattgattgtttttgtcgtcgtgaattgatc-acataccgtggctttggct 288  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||||| | |||  ||||||  || |    ||||  || |||||  | ||||||||||    
T  45078172 tcagattgtggaatccttctatcaacttcgaatccaaaacatctccaagctttgtatgttttaatcat----aatttttccacatattgcggctttggct 45078077  T
Q  289 atgatccagttaatgacagatacaaggtgctagtagttatgcaaaatcagaataat 344  Q
     ||||| |||||||||||||||||||||||| |||||| ||| ||||  |||||||    
T  45078076 ttgatcaagttaatgacagatacaaggtgctggtagttgtgcgaaattggaataat 45078021  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 344
Target Start/End: Complemental strand, 45089494 - 45089343
Alignment:
Q  190 tcagattgtggaatccttctatcaaatatgaatccaaaacatctccaaccattgattgtttttgtcgtcgtgaattgatc-acataccgtggctttggct 288  Q
    ||||||||||||| ||||||||||| |  ||||||||||||||||||||| |||  ||||||  || |    ||||  || ||||| ||||||||||| |    
T  45089494 tcagattgtggaacccttctatcaatttggaatccaaaacatctccaacctttgtatgttttaatcat----aatttttccacatatcgtggctttggtt 45089399  T
Q  289 atgatccagttaatgacagatacaaggtgctagtagttatgcaaaatcagaataat 344  Q
     ||||| ||||||||||| |||||||||||| |||||| ||| ||||  |||||||    
T  45089398 ttgatcaagttaatgacatatacaaggtgctggtagttgtgcgaaattggaataat 45089343  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 44669064 - 44669005
Alignment:
Q  276 cgtggctttggctatgatccagttaatgacagatacaaggtgctagtagttatgcaaaat 335  Q
    ||||||||||||||||||| |||||| ||||| |||||||| |||| |||| ||||||||    
T  44669064 cgtggctttggctatgatcaagttaacgacaggtacaaggtcctagcagttgtgcaaaat 44669005  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 44688340 - 44688281
Alignment:
Q  276 cgtggctttggctatgatccagttaatgacagatacaaggtgctagtagttatgcaaaat 335  Q
    ||||||||||||||||||| |||||| ||||| |||||||| |||| |||| ||||||||    
T  44688340 cgtggctttggctatgatcaagttaacgacaggtacaaggtcctagcagttgtgcaaaat 44688281  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 44669151 - 44669104
Alignment:
Q  195 ttgtggaatccttctatcaaatatgaatccaaaacatctccaaccatt 242  Q
    ||||||||||||||||||||||   |||||||| ||||||||||||||    
T  44669151 ttgtggaatccttctatcaaattgaaatccaaaccatctccaaccatt 44669104  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 44688427 - 44688380
Alignment:
Q  195 ttgtggaatccttctatcaaatatgaatccaaaacatctccaaccatt 242  Q
    ||||||||||||||||||||||   |||||||| ||||||||||||||    
T  44688427 ttgtggaatccttctatcaaattgaaatccaaaccatctccaaccatt 44688380  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 45095831 - 45095774
Alignment:
Q  278 tggctttggctatgatccagttaatgacagatacaaggtgctagtagttatgcaaaat 335  Q
    ||||||||||||||||| |||||| ||||| |||||||| | || |||| ||||||||    
T  45095831 tggctttggctatgatcaagttaacgacaggtacaaggtcccagcagttgtgcaaaat 45095774  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 45095911 - 45095863
Alignment:
Q  195 ttgtggaatccttctatcaaatatgaatccaaaacatctccaaccattg 243  Q
    ||||||||||||||||||||||   |||||||| ||||||| |||||||    
T  45095911 ttgtggaatccttctatcaaattgaaatccaaatcatctcctaccattg 45095863  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 24042249 - 24042188
Alignment:
Q  190 tcagattgtggaatccttctatcaaatatgaatccaaaacatctccaaccattgattgtttt 251  Q
    ||||||| |||||||||||| ||||||  |||||||||| |||||||||||||| |||||||    
T  24042249 tcagattatggaatccttctctcaaattggaatccaaaagatctccaaccattgtttgtttt 24042188  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 42699947 - 42699996
Alignment:
Q  194 attgtggaatccttctatcaaatatgaatccaaaacatctccaaccattg 243  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||||    
T  42699947 attgtggaatccttctatcaatttggaatccaaaacatctccaaccattg 42699996  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 24001890 - 24001943
Alignment:
Q  198 tggaatccttctatcaaatatgaatccaaaacatctccaaccattgattgtttt 251  Q
    |||||||||||| ||||||  |||||||||| |||||||||||||| |||||||    
T  24001890 tggaatccttctctcaaattggaatccaaaagatctccaaccattgtttgtttt 24001943  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 20596545 - 20596485
Alignment:
Q  266 gatcacataccgtggctttggctatgatccagttaatgacagatacaaggtgctagtagtt 326  Q
    ||||||||| | |||||||||||||||||  || |||||| ||||||||||||||| ||||    
T  20596545 gatcacatatcatggctttggctatgatcatgtgaatgaccgatacaaggtgctagcagtt 20596485  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 20604028 - 20603968
Alignment:
Q  266 gatcacataccgtggctttggctatgatccagttaatgacagatacaaggtgctagtagtt 326  Q
    ||||||||| | |||||||||||||||||  || |||||| ||||||||||||||| ||||    
T  20604028 gatcacatatcatggctttggctatgatcatgtgaatgaccgatacaaggtgctagcagtt 20603968  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 42414523 - 42414574
Alignment:
Q  278 tggctttggctatgatccagttaatgacagatacaaggtgctagtagttatg 329  Q
    |||||||||||||||||| |||||| |||  ||||| |||||||||||||||    
T  42414523 tggctttggctatgatcctgttaatcacaagtacaaagtgctagtagttatg 42414574  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 44005238 - 44005194
Alignment:
Q  198 tggaatccttctatcaaatatgaatccaaaacatctccaaccatt 242  Q
    ||||||||||||||||| |   |||||||||||||||||||||||    
T  44005238 tggaatccttctatcaatttgaaatccaaaacatctccaaccatt 44005194  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 41681844 - 41681800
Alignment:
Q  278 tggctttggctatgatccagttaatgacagatacaaggtgctagt 322  Q
    ||||||||||||||||| |||||||||||| ||  ||||||||||    
T  41681844 tggctttggctatgatcaagttaatgacagttatgaggtgctagt 41681800  T

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