View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_high_27 (Length: 227)
Name: NF9040_high_27
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_high_27 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2309544 - 2309318
Alignment:
| Q |
1 |
tttgacaacacattgtacactgaataccatatctcggaacaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309544 |
tttgacaacacattgtacactgaataccatatctcggaacaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaat |
2309445 |
T |
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| Q |
101 |
ggactttagaggatttacgcacatgtgcgttgtggtgccgcactttgataattgattgtttcaagagagttttttggaattatatttatttgattagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309444 |
ggactttagaggatttacgcacatgtgcgttgtggtgccgcactttgataattgattgtttcaagagagttttttggaattatatttatttgattagata |
2309345 |
T |
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| Q |
201 |
aaactcactgaaattgcttttggtcta |
227 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
2309344 |
aaattcactgaaattgcttttggtcta |
2309318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2318679 - 2318457
Alignment:
| Q |
1 |
tttgacaacacattgtacactgaataccatatctcggaacaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaat |
100 |
Q |
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||||||||| ||||||||| || ||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| | ||||||||| |
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| T |
2318679 |
tttgacaacgcattgtacaa--aacaccatttctcagaacaatagcggtttgttcagattctgctacactatagccactatgtgacagcgttgtgttaat |
2318582 |
T |
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| Q |
101 |
ggactttagaggatttacgcacatgtgcgttgtggtgccgcactttgataattgattgtttcaagagagttttttggaattatatttatttgattagata |
200 |
Q |
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||||||||||||||||| |||| | |||| |||||| ||||||||||||||||||||| |||||| || |||| |||||||||| ||||||| |||| |
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| T |
2318581 |
ggactttagaggatttatgcacttatgcg--gtggtgttgcactttgataattgattgttgtaagagacttgtttgaaattatatttgtttgattggata |
2318484 |
T |
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| Q |
201 |
aaactcactgaaattgcttttggtcta |
227 |
Q |
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||| ||||| ||||||||||||||| |
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| T |
2318483 |
aaattcactacgattgcttttggtcta |
2318457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 16950266 - 16950230
Alignment:
| Q |
49 |
tttgttcagattctgctacactatagccactatttga |
85 |
Q |
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| T |
16950266 |
tttgttcaaattctgctacgctatagccactatttga |
16950230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 18749293 - 18749341
Alignment:
| Q |
35 |
cggaacaatagctgtttgttcagattctgctacactatagccactattt |
83 |
Q |
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|||||||||||| ||||| || |||||||||||||||| ||||||||| |
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| T |
18749293 |
cggaacaatagcattttgtccaaattctgctacactataaccactattt |
18749341 |
T |
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