View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9040_high_28 (Length: 218)

Name: NF9040_high_28
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9040_high_28
NF9040_high_28
[»] chr1 (8 HSPs)
chr1 (28-189)||(16438207-16438368)
chr1 (12-129)||(16419719-16419836)
chr1 (17-111)||(16416558-16416652)
chr1 (17-117)||(16427471-16427571)
chr1 (12-113)||(16499326-16499427)
chr1 (21-113)||(16443069-16443161)
chr1 (17-117)||(16432826-16432920)
chr1 (138-187)||(16499470-16499519)
[»] chr8 (8 HSPs)
chr8 (32-81)||(2053869-2053918)
chr8 (32-97)||(10767261-10767326)
chr8 (38-81)||(2032628-2032671)
chr8 (32-78)||(2021933-2021979)
chr8 (32-77)||(1950865-1950910)
chr8 (32-77)||(2028086-2028131)
chr8 (32-77)||(2036677-2036722)
chr8 (32-77)||(2046054-2046099)
[»] chr2 (2 HSPs)
chr2 (32-76)||(28713715-28713759)
chr2 (32-76)||(28743615-28743659)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 16438207 - 16438368
Alignment:
Q  28 actaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccctcgtatgttctatcatccacccgatcacacc 127  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16438207 actaaaagcttttgatgaaacaaaattgggtgttaaaggacttgttgatgcagggattaccaagatccctcgtatgttctatcatccacctgatcacacc 16438306  T
Q  128 aaagagtccggggatgcaacaaattatactattccttttatagatcttgctaacattgataa 189  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16438307 aacgagtccggggatgcaacaaattatactattccttttatagatcttgctaacattgataa 16438368  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 16419836 - 16419719
Alignment:
Q  12 cagagagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccctcgtatgttctatca 111  Q
    |||||||||| |||  ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16419836 cagagagagtgaaaatactgaaagcttttgatgaaacaaaatttggtgtaaaaggacttgttgatgcagggattaccaagatccctcatatgttctatca 16419737  T
Q  112 tccacccgatcacaccaa 129  Q
    |||||| |||||||||||    
T  16419736 tccacctgatcacaccaa 16419719  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 16416652 - 16416558
Alignment:
Q  17 agagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccctcgtatgttctatca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  16416652 agagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgtcgatgcagggattacaaagatccctcgtattttctatca 16416558  T

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Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 16427571 - 16427471
Alignment:
Q  17 agagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccctcgtatgttctatcatccac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| |||||||| ||||    
T  16427571 agagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttagaggacttgttgatgcagggattacaaaggtccctcgtattttctatcaaccac 16427472  T
Q  117 c 117  Q
    |    
T  16427471 c 16427471  T

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Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 16499326 - 16499427
Alignment:
Q  12 cagagagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccctcgtatgttctatca 111  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || |||||    
T  16499326 cagaaagagtaaaagaactcaaagcttttgatgatacaaaacttggtgttaaaggacttgttgatgcagggattaccaaaatccctcatatattttatca 16499425  T
Q  112 tc 113  Q
    ||    
T  16499426 tc 16499427  T

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Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 16443161 - 16443069
Alignment:
Q  21 taaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccctcgtatgttctatcatc 113  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || |||||||    
T  16443161 taaaagaactaaaagattttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaaaatccctcatatattttatcatc 16443069  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 16432920 - 16432826
Alignment:
Q  17 agagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccctcgtatgttctatcatccac 116  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||      ||||||||||||| |||||||||| |||||||| ||||    
T  16432920 agagtaaaagaacttaaagcttttgatgaaaaaaaacttggtgttaaaggacttgt------agggattaccaaggtccctcgtatcttctatcaaccac 16432827  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 16499470 - 16499519
Alignment:
Q  138 gggatgcaacaaattatactattccttttatagatcttgctaacattgat 187  Q
    |||| ||| |||||||||||||| || | |||||||||||||||||||||    
T  16499470 gggacgcatcaaattatactattgctgtgatagatcttgctaacattgat 16499519  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 2053869 - 2053918
Alignment:
Q  32 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagg 81  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||||||    
T  2053869 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg 2053918  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 10767261 - 10767326
Alignment:
Q  32 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccct 97  Q
    ||||| |||||||||||||||  |||||| |||||||||||||||| |||  ||| ||||||||||    
T  10767261 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatggaggacttaacaagatccct 10767326  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 2032628 - 2032671
Alignment:
Q  38 tttgatgaaacaaaacttggtgttaaaggacttgttgatgcagg 81  Q
    |||||||||||||||  |||||| ||||||||||||||||||||    
T  2032628 tttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg 2032671  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 2021933 - 2021979
Alignment:
Q  32 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgc 78  Q
    ||||| |||||||||||||||  |||||| |||||||||||||||||    
T  2021933 aaagcatttgatgaaacaaaagatggtgtcaaaggacttgttgatgc 2021979  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 1950910 - 1950865
Alignment:
Q  32 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 77  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  1950910 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 1950865  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 2028086 - 2028131
Alignment:
Q  32 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 77  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  2028086 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 2028131  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 2036677 - 2036722
Alignment:
Q  32 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 77  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  2036677 aaagcatttgatgaaacaaaatctggtgtgaaaggacttgttgatg 2036722  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 2046054 - 2046099
Alignment:
Q  32 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 77  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  2046054 aaagcatttgatgaaacaaaatctggtgtgaaaggacttgttgatg 2046099  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 28713759 - 28713715
Alignment:
Q  32 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgat 76  Q
    ||||| |||||||||||||||  |||||||||||| |||||||||    
T  28713759 aaagcatttgatgaaacaaaagctggtgttaaaggccttgttgat 28713715  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 28743659 - 28743615
Alignment:
Q  32 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgat 76  Q
    ||||| |||||||||||||||  |||||||||||| |||||||||    
T  28743659 aaagcatttgatgaaacaaaagctggtgttaaaggccttgttgat 28743615  T

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