View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_high_29 (Length: 214)
Name: NF9040_high_29
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 8817270 - 8817084
Alignment:
| Q |
15 |
cattgagatgatcatgttatttttgagnnnnnnncttcttcttttgacatgggagcacggaattttagacttttaggtgtgaagatgatttgtcaatagt |
114 |
Q |
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| T |
8817270 |
cattgagatgatcatgttacttttgagtttttttcttcttcttttgacatgggagcacggaattttagacttttaggtgtgaagatgatttgtcaatagt |
8817171 |
T |
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| Q |
115 |
tgttaatcacaggtcactcaaagtctcaaatatgaaataagttgtctatgtattgtttaatgtgtgtacatacaaagtaatataatg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8817170 |
tgttaatcacaggtcactcaaagtctcaaatatgaaataagttgtctatgtattgtttaatgtgtgtacatacaaagtaatataatg |
8817084 |
T |
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