View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_high_7 (Length: 494)
Name: NF9040_high_7
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 1703742 - 1703265
Alignment:
| Q |
1 |
agtgctcgtagaaccatcatccttacacatcagtgtgctagtagacattggagtgaggacaggtttggcgtcttgcattttggttctttcaagaaggtct |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1703742 |
agtgctcgtagaaccatcatccttacacatcagtgcactagtagacattggagtgaggacaggtttggcgtcttgcattttggttctttcaagaaggtct |
1703643 |
T |
|
| Q |
101 |
ccaatgtatttgtattggctaagaaataatccagcagtacttggaataacctcaacacctagaaagtaatgtaagttgcccaaatctttaattgataaag |
200 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
1703642 |
ccaatgtatttgtgttggctaagaaacaatccagcagtacttggaataacctcaacacccagaaagtaatgtaagttgcccaaatctttaattgagaaag |
1703543 |
T |
|
| Q |
201 |
tgtgtgcaagagctgctatacattcattgactttgatggaggaattacccgtgatgataatatcatctacatatactagtgtgtatagaacactgcctgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
1703542 |
tgtgtgcaagagctgctatacattcattgactttgatggaggaattacccgtgatgataatatcatctacatatactagtgtgtatagaatagtgcctgc |
1703443 |
T |
|
| Q |
301 |
agttcttaaaataaacaaggaagagtcagatttggaatttacaaacccatagtcacataggaatttttgtaaggtttgaaaccaagttcgtggtgcttgc |
400 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
1703442 |
agttctgaaaataaacaaggaagagtcagatttggaatttacaaatccatagtcacataagaatttttgtaaggtttgaaaccaagctcgtggtgcttgc |
1703343 |
T |
|
| Q |
401 |
ttgagaccgtagattgattttcttaggtggcaaacatgatgtggtttttctgggagaatgaagccaggaggttgttgc |
478 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
1703342 |
ttgagaccatagattgattttcttaggcggcaaacatgatgttgtttttctgggtgaatgaagccaggaggttgttgc |
1703265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 347 - 478
Target Start/End: Original strand, 20624746 - 20624877
Alignment:
| Q |
347 |
ccatagtcacataggaatttttgtaaggtttgaaaccaagttcgtggtgcttgcttgagaccgtagattgattttcttaggtggcaaacatgatgtggtt |
446 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |
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| T |
20624746 |
ccatagtcacataagaatttttgtaaggtttgaaaccaagctcgtggtgcttgcttgagaccatagattgattttcttaggcggcaaacatgatgttgtt |
20624845 |
T |
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| Q |
447 |
tttctgggagaatgaagccaggaggttgttgc |
478 |
Q |
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|||||||| ||||||||||||||||||||||| |
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| T |
20624846 |
tttctgggtgaatgaagccaggaggttgttgc |
20624877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 26591007 - 26591044
Alignment:
| Q |
326 |
tcagatttggaatttacaaacccatagtcacataggaa |
363 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||| |
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| T |
26591007 |
tcagattttgaatttacaaacccatagtcacaaaggaa |
26591044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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