View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_10 (Length: 704)
Name: NF9040_low_10
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 10469867 - 10470126
Alignment:
| Q |
19 |
agtattcgagtgaagatacaaattcaaggaggtgattggctattcactccttcaaacaaatgataactttaggaagnnnnnnnn--tcaatatcaattct |
116 |
Q |
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| T |
10469867 |
agtattcgagtgaagatacaaattcaaggaggtgattggctattcactccttcaaacaaatgataactttaggaagaaaaaaaaaatcaatatcaattct |
10469966 |
T |
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| Q |
117 |
tcatcttattgttgaaatctagaaatcctaaatcatcttctttaattggtcaattttataggtggtgtggagtgaatctttgaaatggcggtcttcccat |
216 |
Q |
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| T |
10469967 |
tcatcttattgtggaaatctagaaatcctaaatcatcttctttaattgttcaattttataagtggtgtggagtgaatctttgaaatggcggtcttcccat |
10470066 |
T |
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| Q |
217 |
ttgggagaccagaccatatggttctctagcatctagatagtatggaaaactaaagatgct |
276 |
Q |
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| T |
10470067 |
ttgggagacccgaccatatggttctctagcatctagatagtatggaaaactagagatgct |
10470126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 547 - 689
Target Start/End: Original strand, 10470124 - 10470266
Alignment:
| Q |
547 |
gctatgcgttctttattctgctgcgtattacggaccacgttacctattgagcaaggagcagcatttcaactctcgagtacttgagagatcatgatgtttc |
646 |
Q |
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| T |
10470124 |
gctatgcgttctttattctgctgcgtattacggaccacgttacctattgagcaaggagcagcatttcaactctcgagtacttgagagatcatgatgtttc |
10470223 |
T |
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| Q |
647 |
ttttctggaactttatgttctttcactattggattggtctgtg |
689 |
Q |
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| T |
10470224 |
ttttcaggaactttatgttctttcactgttggattggtctgtg |
10470266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 426
Target Start/End: Complemental strand, 10616367 - 10616232
Alignment:
| Q |
291 |
aaaggttttgagttggagaaggttgtggaggaggcaaaagttctatcttagaaaattcttaaaaccataacaagaggaattgtttatgcaagaaataagt |
390 |
Q |
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| T |
10616367 |
aaaggttttgattgggagaagattgtggaggagacataaatcctatcttggaaactccatagcaccaaatcaagaggattcatttatgcaatgaatcagt |
10616268 |
T |
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| Q |
391 |
ggcttgagaacaagttgagctgtttggggacagtaa |
426 |
Q |
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| T |
10616267 |
ggcttgaaaaccctttgagctgtttggggatagtaa |
10616232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 30950217 - 30950131
Alignment:
| Q |
282 |
ttttctcataaaggttttgagttggagaaggttgtggaggag-gcaaaagttctatcttagaaaattcttaaaaccataacaagagg |
367 |
Q |
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| T |
30950217 |
ttttctcataaaggttatgattgggataaggttgcggaggagaccaaaaattctatcttaggagatgcttaaaaccaaatcaagagg |
30950131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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