View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9040_low_11 (Length: 680)

Name: NF9040_low_11
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9040_low_11
NF9040_low_11
[»] chr2 (5 HSPs)
chr2 (15-356)||(1245726-1246078)
chr2 (47-105)||(42602551-42602609)
chr2 (49-82)||(37480095-37480128)
chr2 (40-92)||(19244119-19244171)
chr2 (49-81)||(24191859-24191891)
[»] chr5 (5 HSPs)
chr5 (192-367)||(38309490-38309662)
chr5 (182-269)||(32987691-32987778)
chr5 (455-514)||(38310446-38310505)
chr5 (49-105)||(30883221-30883277)
chr5 (56-97)||(17155829-17155870)
[»] chr8 (2 HSPs)
chr8 (49-84)||(19703510-19703545)
chr8 (54-82)||(12281514-12281542)
[»] chr4 (3 HSPs)
chr4 (49-84)||(1730512-1730547)
chr4 (47-84)||(41683767-41683804)
chr4 (55-95)||(15180748-15180788)
[»] chr1 (2 HSPs)
chr1 (49-103)||(11063555-11063609)
chr1 (47-84)||(21184409-21184446)
[»] chr6 (1 HSPs)
chr6 (57-94)||(14550676-14550713)
[»] chr3 (1 HSPs)
chr3 (49-82)||(21960571-21960604)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 1246078 - 1245726
Alignment:
Q  15 gacatcagaaagaatagtactcgaaacctttggaaggatcacactctcaggtcccaagccaataccactacaccaacctaaattggtttatcttgttaag 114  Q
    ||||| || |||||| |||| || |||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |    
T  1246078 gacattaggaagaattgtacccgtaacctttggaaggagcacactctcagaccccaagccaataccactacaccaacctaaattggtttatcttgttacg 1245979  T
Q  115 cctatggattcccttcttaaactttagggtggacatttctaatctta--------------cagagaactttttagatacattttgacaattgtcaaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||| |||||||||    
T  1245978 cctatggattcccttcttaaactttagggtggacatttctaatcttaatattagactattacagagaactttttagatacattttgacaagtgtcaaatt 1245879  T
Q  201 ttcaagctatcaacctatacatcacaaaaactcaaagatcacttttttagccaaatttagctttcatggaataggagggaaatcttttcatttgaaattc 300  Q
    ||||||||||| |||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1245878 ttcaagctatccacctata--tcacaaaaactcaaagataacttttttagccaaatttagctttcatggaataggagggaaatcttttcatttgaaattc 1245781  T
Q  301 aaatccactaaaagacaagcgaaagatgctatctgaatccacaattttagccaaac 356  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  1245780 aaatccactaaaagacaagtgaaagatgctatctg-atccacaattttagccaaac 1245726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 42602609 - 42602551
Alignment:
Q  47 gaaggatcacactctcaggtcccaagccaataccactacaccaacctaaattggtttat 105  Q
    |||||| ||||||| |||||||||||||||||||||||  |||||| || | |||||||    
T  42602609 gaaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtttat 42602551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 37480128 - 37480095
Alignment:
Q  49 aggatcacactctcaggtcccaagccaataccac 82  Q
    |||| |||||||||||||||||||||||||||||    
T  37480128 aggagcacactctcaggtcccaagccaataccac 37480095  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 19244171 - 19244119
Alignment:
Q  40 acctttggaaggatcacactctcaggtcccaagccaataccactacaccaacc 92  Q
    ||||| || |||| ||||||||||||||||||| |||||||| || |||||||    
T  19244171 accttggggaggagcacactctcaggtcccaagtcaataccagtagaccaacc 19244119  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 24191891 - 24191859
Alignment:
Q  49 aggatcacactctcaggtcccaagccaatacca 81  Q
    |||| ||||||||||||||||||||||||||||    
T  24191891 aggagcacactctcaggtcccaagccaatacca 24191859  T

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Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 192 - 367
Target Start/End: Original strand, 38309490 - 38309662
Alignment:
Q  192 tgtcaaattttcaagctatcaacctatacatcacaaaaactcaaagatcacttttttagccaaatttagctttcatggaataggagggaaatcttttcat 291  Q
    |||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||||    
T  38309490 tgtcaaattttcaagctatccacatatacatcacaaaaactcaaa-atcacttttttagccaaatttagctttcatgcattaggagggaaattttttcat 38309588  T
Q  292 ttgaaattcaaatccactaaaagacaagcgaaagatgctatctgaatccacaattttagccaaactccagacaaac 367  Q
    ||||| |||||||||| |||| |||||| | ||||||||||||| ||||| ||||||||| |||||||| ||||||    
T  38309589 ttgaatttcaaatccattaaatgacaagtg-aagatgctatctg-atccaaaattttagctaaactccaaacaaac 38309662  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 32987778 - 32987691
Alignment:
Q  182 ttttgacaattgtcaaattttcaagctatcaacctatacatcacaaaaactcaaagatcacttttttagccaaatttagctttcatgg 269  Q
    |||| |||| ||||||||||| ||||||||  | | ||||||||||||||| || |  ||||||||||||||||||||||| ||||||    
T  32987778 tttttacaagtgtcaaattttaaagctatccgcatgtacatcacaaaaactaaaggtacacttttttagccaaatttagctctcatgg 32987691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 455 - 514
Target Start/End: Original strand, 38310446 - 38310505
Alignment:
Q  455 caaccaattctccgccttcagtaccgatgaatccaccgccaccgacaatcaatggtttct 514  Q
    ||||| || ||||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  38310446 caaccgatcctccgccttcagtgccgatgaatccaccgccactgacagtcaatggtttct 38310505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 30883221 - 30883277
Alignment:
Q  49 aggatcacactctcaggtcccaagccaataccactacaccaacctaaattggtttat 105  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||| || | |||||||    
T  30883221 aggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggtttat 30883277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 17155870 - 17155829
Alignment:
Q  56 cactctcaggtcccaagccaataccactacaccaacctaaat 97  Q
    |||||||||||||||| |||||||||||| ||||||| ||||    
T  17155870 cactctcaggtcccaaaccaataccactaaaccaacccaaat 17155829  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 19703510 - 19703545
Alignment:
Q  49 aggatcacactctcaggtcccaagccaataccacta 84  Q
    |||| |||||||||||||||||||||||||||||||    
T  19703510 aggagcacactctcaggtcccaagccaataccacta 19703545  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 12281542 - 12281514
Alignment:
Q  54 cacactctcaggtcccaagccaataccac 82  Q
    |||||||||||||||||||||||||||||    
T  12281542 cacactctcaggtcccaagccaataccac 12281514  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 1730512 - 1730547
Alignment:
Q  49 aggatcacactctcaggtcccaagccaataccacta 84  Q
    |||| |||||||||||||||||||||||||||||||    
T  1730512 aggagcacactctcaggtcccaagccaataccacta 1730547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 41683804 - 41683767
Alignment:
Q  47 gaaggatcacactctcaggtcccaagccaataccacta 84  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  41683804 gaaggagcacactctcaggttccaagccaataccacta 41683767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 15180788 - 15180748
Alignment:
Q  55 acactctcaggtcccaagccaataccactacaccaacctaa 95  Q
    |||||| ||||||||||||||||||||||| ||||| ||||    
T  15180788 acactcccaggtcccaagccaataccactagaccaatctaa 15180748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 11063609 - 11063555
Alignment:
Q  49 aggatcacactctcaggtcccaagccaataccactacaccaacctaaattggttt 103  Q
    |||| |||||| |||||||||||||||||||||||| | ||||| |||| |||||    
T  11063609 aggaacacactttcaggtcccaagccaataccactagatcaacccaaatgggttt 11063555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 21184409 - 21184446
Alignment:
Q  47 gaaggatcacactctcaggtcccaagccaataccacta 84  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  21184409 gaaggagcacactcgcaggtcccaagccaataccacta 21184446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 14550676 - 14550713
Alignment:
Q  57 actctcaggtcccaagccaataccactacaccaaccta 94  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  14550676 actctcaggtctcaagccaataccactataccaaccta 14550713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 21960604 - 21960571
Alignment:
Q  49 aggatcacactctcaggtcccaagccaataccac 82  Q
    |||| |||||||||||||||||||||||||||||    
T  21960604 aggagcacactctcaggtcccaagccaataccac 21960571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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