View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_14 (Length: 563)
Name: NF9040_low_14
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 12 - 549
Target Start/End: Original strand, 8817273 - 8817811
Alignment:
| Q |
12 |
gaacctgtgtctctgtatgtatcttggaatatagtacactatttgttctgaacacgagcaataagtccaatccacaccccaagacataagaaaaagccat |
111 |
Q |
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| T |
8817273 |
gaacctgtgtctctgtatgtatcttggaatatagtacactatttgttctgaacacgagcaataagtccaatccacaccccaagacataagaaaaagccat |
8817372 |
T |
|
| Q |
112 |
aatcaaatacacaagcatgaaacaatgtgctccgatgcaagaattttcacttagtggcacactagtggcttcaagatcataaagataaccagcaatgaga |
211 |
Q |
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| T |
8817373 |
aatcaaatacacaagcatgaaacaatgtgctccgatgcaagaattttcacttcgtggcacactagtggcttcaagatcataaagataaccagcaatgaga |
8817472 |
T |
|
| Q |
212 |
ccagaaaagaggaatgaaccaacagaaaggttgagaatgaggatgttttataatgaaccatgttatttgagtcc-aatagttctgaacctgctgatggtg |
310 |
Q |
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| T |
8817473 |
tcagaaaagaggaatgaaccaatagaaaggttgagaatgaggatgttttataatgaaccatgttatttgagtccaaatagttctgaacctgctgattgtg |
8817572 |
T |
|
| Q |
311 |
taaatagtaagaggaactccatagcatataccaactaacatcaaaccaatgtataggaatcatgataaggccatagctaatgcattgtaaccaaaaaaca |
410 |
Q |
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| T |
8817573 |
taaatagtaagacgaactccatagcatataccaactaacatcaaaccaatgtataggaatcatgataaggccatagctaatgcattgtaaccaaaaaaca |
8817672 |
T |
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| Q |
411 |
tcagaatttgagaagctgcattccaaactagtcttggcatgcctgattttctgcaatataaatttaacatttcaaggtcaataaattggtagaatagcca |
510 |
Q |
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| T |
8817673 |
tcagaatttgagaagctgcattccaaactagtcttggcatgcctgattttctgcaatataaatttaacatttcaaggtcaataaattggtagaatagcca |
8817772 |
T |
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| Q |
511 |
tcccagttcaaaagaaaacaattacaaagaacacaaaca |
549 |
Q |
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| T |
8817773 |
tcccagttcaaaagaaaacaattacaaagaacacaaaca |
8817811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 499
Target Start/End: Original strand, 8818889 - 8819363
Alignment:
| Q |
21 |
tctctgtatgtatcttggaatatagtacactatttgttctgaacacgagcaataagtccaatccacaccccaagacataagaaaaagccataatcaaata |
120 |
Q |
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|||||||||||||||||||||||| || | |||||||| || | || || | ||| |||||||||||||| ||| ||| ||||||||||||| ||| |
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| T |
8818889 |
tctctgtatgtatcttggaatata---cattctttgttctaaatgcaagaaacaggtctaatccacaccccaatacacaagcgaaagccataatcacata |
8818985 |
T |
|
| Q |
121 |
cacaagcatgaaacaatgtgctccgatgcaagaattttcacttagtggcacactagtggcttcaagatcataaagataaccagcaatgagaccagaaaag |
220 |
Q |
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| T |
8818986 |
cacaagcatgaaacaatgtgctccactgcaagtgtttccgcctcctggcacactggtggcttcaatatcataaaggtagccggcaatgagaccagaaaag |
8819085 |
T |
|
| Q |
221 |
aggaatgaaccaacagaaaggttgagaatgaggatgttttataatgaaccatgttatttgagtccaa-tagttctgaacctgctgatggtgtaaatagta |
319 |
Q |
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| T |
8819086 |
atgaatgaaccgataggaaggttgagaatgaggatgttgtataataaaccatagtatttgagaccaaatagttctgaagctgctgctggtgtta-tagta |
8819184 |
T |
|
| Q |
320 |
agaggaactccatagcatataccaactaacatcaaaccaatgtataggaatcatgataaggccatagctaatgcattgtaaccaaaaaacatcagaattt |
419 |
Q |
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||| ||||||| || ||||| || ||||| || ||||||||||||| | | || ||||||||| || |||||| |||||||||||||||||||||||| |
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| T |
8819185 |
agacgaactccgtaacatattcctactaagattgaaccaatgtatagtgaccctggtaaggccattgccaatgcaatgtaaccaaaaaacatcagaattt |
8819284 |
T |
|
| Q |
420 |
gagaagctgcattccaaactagtcttggcatgcctgattttctgcaatataaatttaacatttcaaggtcaataaattgg |
499 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||| |
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| T |
8819285 |
gagatgctgcattccaaactaaccttggcatgcctgattttctgccatataaaattaaca-ttcaaggtcagtaaattgg |
8819363 |
T |
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