View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9040_low_22 (Length: 491)

Name: NF9040_low_22
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9040_low_22
NF9040_low_22
[»] chr1 (35 HSPs)
chr1 (86-471)||(7014666-7015069)
chr1 (86-308)||(33686436-33686658)
chr1 (86-308)||(12926800-12927022)
chr1 (86-294)||(43138541-43138749)
chr1 (86-308)||(10308446-10308667)
chr1 (364-471)||(16313930-16314037)
chr1 (113-309)||(22605410-22605607)
chr1 (88-309)||(30858468-30858693)
chr1 (86-278)||(15399072-15399265)
chr1 (363-451)||(1181470-1181558)
chr1 (150-279)||(49150546-49150675)
chr1 (382-471)||(44490670-44490759)
chr1 (380-459)||(30702993-30703072)
chr1 (112-309)||(1671244-1671441)
chr1 (187-309)||(41871704-41871825)
chr1 (380-471)||(12067972-12068063)
chr1 (382-471)||(49000774-49000863)
chr1 (406-471)||(43514366-43514431)
chr1 (385-471)||(33296454-33296540)
chr1 (194-309)||(3660178-3660292)
chr1 (317-388)||(30703078-30703149)
chr1 (406-447)||(9355412-9355453)
chr1 (221-309)||(21482877-21482964)
chr1 (86-142)||(45053369-45053425)
chr1 (218-309)||(5770587-5770677)
chr1 (389-468)||(23943606-23943685)
chr1 (187-278)||(48566760-48566850)
chr1 (86-137)||(49150666-49150717)
chr1 (187-278)||(49597195-49597285)
chr1 (406-471)||(36182842-36182907)
chr1 (419-471)||(25901365-25901417)
chr1 (418-464)||(25901395-25901441)
chr1 (435-471)||(16315368-16315404)
chr1 (198-278)||(20447168-20447248)
chr1 (198-278)||(20532931-20533011)
[»] chr5 (24 HSPs)
chr5 (86-471)||(12143838-12144241)
chr5 (87-308)||(1081781-1082002)
chr5 (86-329)||(18172028-18172274)
chr5 (86-278)||(7662096-7662288)
chr5 (150-308)||(2786705-2786863)
chr5 (317-471)||(35048718-35048871)
chr5 (150-297)||(34954032-34954179)
chr5 (380-467)||(20882933-20883020)
chr5 (380-471)||(29195227-29195318)
chr5 (206-309)||(43147438-43147541)
chr5 (382-471)||(13275023-13275112)
chr5 (113-309)||(40033920-40034117)
chr5 (382-471)||(2743848-2743937)
chr5 (86-147)||(8688216-8688277)
chr5 (385-445)||(40018099-40018159)
chr5 (86-137)||(2786854-2786905)
chr5 (189-279)||(10532794-10532883)
chr5 (86-137)||(34954170-34954221)
chr5 (189-278)||(6427286-6427374)
chr5 (218-306)||(16100855-16100942)
chr5 (411-471)||(26092496-26092556)
chr5 (187-278)||(41758706-41758796)
chr5 (236-309)||(11125828-11125899)
chr5 (435-471)||(20887908-20887944)
[»] chr2 (27 HSPs)
chr2 (86-305)||(34619793-34620012)
chr2 (86-308)||(41192275-41192497)
chr2 (86-308)||(5814427-5814650)
chr2 (86-329)||(1887866-1888113)
chr2 (86-297)||(6728602-6728813)
chr2 (86-278)||(32737764-32737956)
chr2 (86-308)||(21083741-21083962)
chr2 (86-309)||(4616536-4616753)
chr2 (86-309)||(5290591-5290815)
chr2 (86-298)||(26257667-26257880)
chr2 (380-471)||(19380212-19380303)
chr2 (166-309)||(37057171-37057314)
chr2 (385-471)||(5848088-5848174)
chr2 (363-465)||(11816056-11816158)
chr2 (113-309)||(2195086-2195282)
chr2 (86-175)||(35151421-35151510)
chr2 (189-309)||(29132631-29132750)
chr2 (382-468)||(28036568-28036654)
chr2 (187-309)||(29908474-29908595)
chr2 (195-284)||(12874239-12874327)
chr2 (419-467)||(38807245-38807293)
chr2 (388-439)||(187259-187310)
chr2 (385-439)||(31116221-31116275)
chr2 (389-434)||(6401763-6401808)
chr2 (86-147)||(37057346-37057407)
chr2 (419-467)||(9826727-9826775)
chr2 (222-278)||(37891767-37891823)
[»] chr6 (15 HSPs)
chr6 (86-308)||(11598992-11599208)
chr6 (86-308)||(30634007-30634229)
chr6 (112-309)||(3515136-3515333)
chr6 (317-460)||(1031698-1031855)
chr6 (382-471)||(7527060-7527149)
chr6 (382-471)||(35018734-35018823)
chr6 (382-471)||(4361973-4362062)
chr6 (218-309)||(23912275-23912365)
chr6 (188-297)||(319208-319316)
chr6 (385-434)||(9929595-9929644)
chr6 (387-434)||(4410235-4410282)
chr6 (416-471)||(800344-800399)
chr6 (391-434)||(7919335-7919378)
chr6 (187-309)||(13312558-13312679)
chr6 (389-431)||(32879621-32879663)
[»] chr3 (23 HSPs)
chr3 (86-309)||(49741991-49742214)
chr3 (86-305)||(41649922-41650141)
chr3 (86-308)||(49501424-49501646)
chr3 (86-279)||(2447596-2447789)
chr3 (86-278)||(49303211-49303403)
chr3 (88-309)||(23029619-23029829)
chr3 (363-471)||(34437007-34437115)
chr3 (389-465)||(46182972-46183048)
chr3 (380-471)||(53772293-53772384)
chr3 (385-471)||(46637055-46637141)
chr3 (187-284)||(25574823-25574919)
chr3 (218-309)||(6755740-6755830)
chr3 (187-309)||(6462967-6463088)
chr3 (387-445)||(20513503-20513561)
chr3 (187-309)||(39415317-39415438)
chr3 (187-277)||(48086846-48086935)
chr3 (396-439)||(54336763-54336806)
chr3 (382-424)||(29522953-29522995)
chr3 (385-439)||(30842112-30842166)
chr3 (417-464)||(29522206-29522253)
chr3 (236-286)||(33448636-33448686)
chr3 (389-470)||(7789945-7790026)
chr3 (267-308)||(53401547-53401588)
[»] scaffold0051 (1 HSPs)
scaffold0051 (86-305)||(20069-20288)
[»] chr7 (26 HSPs)
chr7 (86-308)||(4035044-4035266)
chr7 (86-303)||(14678282-14678499)
chr7 (87-278)||(37450005-37450195)
chr7 (86-263)||(3742262-3742439)
chr7 (86-328)||(39283938-39284184)
chr7 (86-278)||(40144675-40144867)
chr7 (317-466)||(44226436-44226599)
chr7 (389-471)||(432933-433015)
chr7 (194-328)||(8260828-8260966)
chr7 (385-471)||(23943724-23943810)
chr7 (382-470)||(38458342-38458430)
chr7 (385-471)||(23245936-23246022)
chr7 (384-445)||(46273496-46273557)
chr7 (218-278)||(30362750-30362810)
chr7 (194-278)||(41219376-41219459)
chr7 (189-304)||(37524153-37524267)
chr7 (194-279)||(18239408-18239492)
chr7 (218-278)||(27874050-27874109)
chr7 (411-471)||(30859781-30859841)
chr7 (391-439)||(36653273-36653321)
chr7 (219-309)||(29714271-29714359)
chr7 (389-431)||(31877428-31877470)
chr7 (150-251)||(33802972-33803073)
chr7 (189-278)||(39476531-39476619)
chr7 (435-471)||(11356200-11356236)
chr7 (389-445)||(30665644-30665700)
[»] chr8 (24 HSPs)
chr8 (86-308)||(4322669-4322891)
chr8 (86-308)||(35161580-35161800)
chr8 (86-306)||(9039640-9039860)
chr8 (86-309)||(1217763-1217986)
chr8 (86-242)||(15739599-15739755)
chr8 (86-309)||(42182632-42182858)
chr8 (86-309)||(5913008-5913231)
chr8 (86-309)||(4759096-4759323)
chr8 (383-450)||(39047283-39047350)
chr8 (239-308)||(15743234-15743303)
chr8 (317-471)||(41601509-41601677)
chr8 (390-471)||(4412626-4412707)
chr8 (385-471)||(5015395-5015481)
chr8 (385-471)||(5076257-5076343)
chr8 (86-249)||(23810743-23810911)
chr8 (422-471)||(37227016-37227065)
chr8 (187-278)||(34471587-34471676)
chr8 (416-470)||(36933396-36933450)
chr8 (177-262)||(2766846-2766931)
chr8 (317-361)||(5076217-5076261)
chr8 (385-445)||(9512450-9512510)
chr8 (198-287)||(23542748-23542836)
chr8 (390-467)||(43531996-43532073)
chr8 (385-445)||(1175603-1175663)
[»] chr4 (50 HSPs)
chr4 (86-307)||(52789369-52789590)
chr4 (86-309)||(34939251-34939474)
chr4 (86-305)||(33985341-33985560)
chr4 (86-308)||(54703610-54703831)
chr4 (86-296)||(54808896-54809106)
chr4 (86-328)||(42118923-42119170)
chr4 (132-297)||(43502223-43502388)
chr4 (88-263)||(51242828-51243004)
chr4 (86-235)||(36046798-36046947)
chr4 (113-328)||(37694430-37694650)
chr4 (380-471)||(22923311-22923402)
chr4 (380-471)||(22927964-22928055)
chr4 (380-471)||(22984243-22984334)
chr4 (380-471)||(22997831-22997922)
chr4 (380-469)||(12657186-12657275)
chr4 (86-278)||(47020068-47020259)
chr4 (94-263)||(52032598-52032771)
chr4 (86-275)||(45042901-45043090)
chr4 (385-471)||(54185605-54185691)
chr4 (385-471)||(32304869-32304955)
chr4 (317-471)||(50334009-50334161)
chr4 (385-471)||(45864949-45865035)
chr4 (380-471)||(1939358-1939449)
chr4 (86-271)||(779343-779533)
chr4 (385-471)||(156066-156152)
chr4 (194-309)||(9242920-9243034)
chr4 (388-470)||(41420632-41420712)
chr4 (385-434)||(21283799-21283848)
chr4 (389-471)||(11660787-11660869)
chr4 (406-465)||(18487114-18487173)
chr4 (390-445)||(42040446-42040501)
chr4 (385-471)||(16935498-16935584)
chr4 (187-309)||(38131410-38131531)
chr4 (389-466)||(11661045-11661122)
chr4 (194-278)||(49065552-49065635)
chr4 (435-471)||(50336433-50336469)
chr4 (218-309)||(2777946-2778036)
chr4 (194-278)||(27761131-27761214)
chr4 (411-471)||(32303830-32303890)
chr4 (435-471)||(43210231-43210267)
chr4 (187-274)||(42039021-42039107)
chr4 (384-471)||(42704368-42704455)
chr4 (416-471)||(49063169-49063224)
chr4 (189-279)||(1227934-1228024)
chr4 (411-445)||(16936153-16936187)
chr4 (245-295)||(36046943-36046993)
chr4 (385-459)||(49285534-49285608)
chr4 (439-471)||(5534321-5534353)
chr4 (189-273)||(32935692-32935775)
chr4 (386-442)||(50197520-50197576)
[»] scaffold0753 (1 HSPs)
scaffold0753 (194-278)||(4001-4085)
[»] scaffold0001 (1 HSPs)
scaffold0001 (385-439)||(185436-185490)
[»] scaffold0012 (1 HSPs)
scaffold0012 (389-471)||(36266-36348)
[»] scaffold0007 (1 HSPs)
scaffold0007 (388-466)||(256425-256503)
[»] scaffold0217 (1 HSPs)
scaffold0217 (194-278)||(25601-25685)
[»] scaffold0010 (1 HSPs)
scaffold0010 (389-439)||(28599-28649)
[»] scaffold0015 (1 HSPs)
scaffold0015 (385-434)||(33587-33636)
[»] scaffold0861 (1 HSPs)
scaffold0861 (189-277)||(3721-3808)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 86 - 471
Target Start/End: Original strand, 7014666 - 7015069
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||    
T  7014666 tttttataggtggtataaggtatatgacacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaattcaatcaaaaccattgactac 7014765  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| ||||||    
T  7014766 cgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcatatgcttagtggtgcgtgacttaagtcacgtagagc 7014865  T
Q  286 ttgtgaggtgcgtgagttaagt----cagcgagacttaactcacgcaatgtattacacttgcacaacttaattgacgcagcctcacacaatgttttac-- 379  Q
    ||||||||||||||||||||||    | | | ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||      
T  7014866 ttgtgaggtgcgtgagttaagtctcgctgtgtgacttaactcacgcaatgttttacacttgcgcaacttaattgacgcagcctcacgcagtgttttacac 7014965  T
Q  380 ------------acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcg 467  Q
                ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7014966 ttgcgcatcttaacttgcgcagcgttagttaactaacgcgtagtttttcacttgcgttagttaactagcgcaagggtaaatttcgaacggctgcagggcg 7015065  T
Q  468 cgag 471  Q
    ||||    
T  7015066 cgag 7015069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 86 - 308
Target Start/End: Original strand, 33686436 - 33686658
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |  |||||||||| |||||||||    
T  33686436 tttttataggtggtataaggtatatgccacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaatccaatcaaaaccattgactac 33686535  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||  | |||    
T  33686536 cgtccaagaaacatttgtgcttcagtttttaccaccggccaacttacgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcaaagc 33686635  T
Q  286 ttgtgaggtgcgtgagttaagtc 308  Q
    |||||||||||||||||||||||    
T  33686636 ttgtgaggtgcgtgagttaagtc 33686658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 86 - 308
Target Start/End: Complemental strand, 12927022 - 12926800
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    ||||||||||||||||||  |||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||| | ||||||||||| ||| |||||    
T  12927022 tttttataggtggtataagatatacggcacttaatgaggtccaaaaacgtgtgtaaaacttaagaaaaacgtgtaaaattcaatcaaaaccattaactac 12926923  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
    ||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||    
T  12926922 tgtccaagaaacgtttgtgcttcagtttttaccattagccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcgcgcagagc 12926823  T
Q  286 ttgtgaggtgcgtgagttaagtc 308  Q
    ||||||||||| |||||||||||    
T  12926822 ttgtgaggtgcatgagttaagtc 12926800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 86 - 294
Target Start/End: Original strand, 43138541 - 43138749
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||| |  ||||  |||| |||||||||    
T  43138541 tttttataggtggtataaggtatatgacacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaatgtgtaaaatccaatttaaaccattgactac 43138640  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||  |||||    
T  43138641 cgtccaagaaacgtttgtgcttcagtttttatcaccggccaatttgcgcaagttaactcgcgcataggctcagtggtgcgcgacttaaatcacgcagagc 43138740  T
Q  286 ttgtgaggt 294  Q
    |||||||||    
T  43138741 ttgtgaggt 43138749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 86 - 308
Target Start/End: Complemental strand, 10308667 - 10308446
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagt-caatcaaaactattgacta 184  Q
    |||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||  ||||||||||||| ||| |||||||||  ||||||||    
T  10308667 tttttataggtggtataaggtatatagcacttaatgaggtccaaaaacgtgtgaaaaactttagaaaaacgtgtaa-agtccaatcaaaatcattgacta 10308569  T
Q  185 ctgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagag 284  Q
    | ||   ||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |||| | || ||||||||| |||||||||||||| | ||    
T  10308568 ccgttagagaaatgtttgtgcttcagtgtttaccaccggccaacttgcgcaagttaactcacgcacatgc-cagtggtgcgtgacttaagtcacacaaag 10308470  T
Q  285 cttgtgaggtgcgtgagttaagtc 308  Q
    ||||||||||||||||||||||||    
T  10308469 cttgtgaggtgcgtgagttaagtc 10308446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 364 - 471
Target Start/End: Complemental strand, 16314037 - 16313930
Alignment:
Q  364 tcacacaatgttttacacttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcag 463  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  16314037 tcacacagtgttttacacttgcgcagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttgaaacggctgcat 16313938  T
Q  464 ggcgcgag 471  Q
    | ||||||    
T  16313937 gacgcgag 16313930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 113 - 309
Target Start/End: Complemental strand, 22605607 - 22605410
Alignment:
Q  113 cacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaa-cgtgtaacagtcaatcaaaactattgactactgtccaagaaacgtttgtgcttcagt 211  Q
    ||||||||||| |||||||||||| ||||||||||  ||||| ||||||| |  |||| ||||  | |||| || |||||| |||||| | | |||||||    
T  22605607 cacttaatgagatccaaaaacgtgagaaaaacttaaaaaaaaacgtgtaagaaccaataaaaagcaatgaccaccgtccaaaaaacgtatattcttcagt 22605508  T
Q  212 ttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    ||||| ||||||| |||||||||||||||||||| | | ||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||||||||    
T  22605507 ttttaccaccggctaacttgcgcaagttaactcgtgtagaggctcaatggtgcgtgacttaagtcacgtagagcttgtgaggtgcgtgacttaagtca 22605410  T

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Target: chr1; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 88 - 309
Target Start/End: Complemental strand, 30858693 - 30858468
Alignment:
Q  88 tttataggtggtataatgtat-atggcacttaatgagctccaaaaacgtgtgaaaaactt---acgaaaaacgtgtaacagtcaatcaaaactattgact 183  Q
    |||||||||||| ||| |||  || |||||||||||| |||||||||||| |||||||||   |  |||||||||||| |  |||| ||||  ||||||     
T  30858693 tttataggtggtttaaggtagcatagcacttaatgagatccaaaaacgtgagaaaaactttttaaaaaaaacgtgtaaaacccaataaaaagcattgacc 30858594  T
Q  184 actgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacataga 283  Q
    |  ||| || |||||||||| |||||| ||| | ||||||||||||||||| |||||||||||| | ||||||| ||||  ||||||||||||||| |||    
T  30858593 atcgtctaaaaaacgtttgttcttcagctttgaccaccggccaacttgcgcgagttaactcgcgtagaggctcaatggtttatgacttaagtcacacaga 30858494  T
Q  284 gcttgtgaggtgcgtgagttaagtca 309  Q
    |||||| |||||||||||||||||||    
T  30858493 gcttgtaaggtgcgtgagttaagtca 30858468  T

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Target: chr1; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 86 - 278
Target Start/End: Complemental strand, 15399265 - 15399072
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaac-gtgtaacagtcaatcaaaactattgacta 184  Q
    |||||||||||||||||| ||| || |||||||||||| ||||| |||||||||||||||||  |||||  |||||| |  |||||||||  |||||| |    
T  15399265 tttttataggtggtataaggtagatagcacttaatgaggtccaacaacgtgtgaaaaacttaaaaaaaaaagtgtaaaaaccaatcaaaagcattgacaa 15399166  T
Q  185 ctgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    | |||| | |||||||||||||||| |||||| ||||  |||||||||| ||||||||||||||| || ||| ||||||| |||||||| ||||    
T  15399165 ccgtcccataaacgtttgtgcttcaatttttaccaccatccaacttgcgtaagttaactcgcgcagagactcggtggtgcgtgacttaactcac 15399072  T

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Target: chr1; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 363 - 451
Target Start/End: Original strand, 1181470 - 1181558
Alignment:
Q  363 ctcacacaatgttttacacttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttg 451  Q
    ||||| || ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1181470 ctcacgcagtgttttacacttgcgcaacgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttg 1181558  T

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Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 150 - 279
Target Start/End: Complemental strand, 49150675 - 49150546
Alignment:
Q  150 aaaaacgtgtaacagtcaatcaaaactattgactactgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgca 249  Q
    |||||||||||| | ||||||||||  |||| | || |||| |||||||||| ||||| |||||||| |||||||||| |||||||||| ||| ||||||    
T  49150675 aaaaacgtgtaaaaatcaatcaaaagcattggccaccgtcccagaaacgtttatgcttaagtttttaccaccggccaatttgcgcaagtcaacgcgcgca 49150576  T
Q  250 taggctcagtggtgcatgacttaagtcaca 279  Q
     |||||||||||||| |||||||| |||||    
T  49150575 gaggctcagtggtgcgtgacttaactcaca 49150546  T

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Target: chr1; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 44490670 - 44490759
Alignment:
Q  382 ttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||| |||||||||||| | ||||  ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  44490670 ttgcgcagtgttagttaactagcgcatacatttacacttgcgtgagttaactagtgcaagggtaaatttggaacggctgcagggcgcgag 44490759  T

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Target: chr1; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 380 - 459
Target Start/End: Complemental strand, 30703072 - 30702993
Alignment:
Q  380 acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggct 459  Q
    ||||||||| |||||||||||||||||||| ||||||| |||||||||||||||  || |||||||||||||||||||||    
T  30703072 acttgcgcaacgttagttaactaacacataatttttcagttgcgttagttaactcacggaagggtaaatttggaacggct 30702993  T

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Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 309
Target Start/End: Original strand, 1671244 - 1671441
Alignment:
Q  112 gcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaa-acgtgtaacagtcaatcaaaactattgactactgtccaagaaacgtttgtgcttcag 210  Q
    |||||||||||| |||||||||||| |||||| |||  |||| |  ||||| | ||||| ||||  |||||| || |||||| |||||||||| ||||||    
T  1671244 gcacttaatgaggtccaaaaacgtgagaaaaatttaaaaaaataaatgtaaaaatcaataaaaagcattgaccaccgtccaa-aaacgtttgttcttcag 1671342  T
Q  211 tttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    |||| | ||||| ||||||||||   ||||||||||||| |||||||||||| | |||||||||||    | | ||||| |||||||||| ||||||||    
T  1671343 ttttgaccaccgaccaacttgcgtgcgttaactcgcgcagaggctcagtggttcgtgacttaagtcctgcaaaacttgtaaggtgcgtgaattaagtca 1671441  T

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Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 41871825 - 41871704
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagct 286  Q
    |||||| |||||||||| |||||||| ||| ||||||||||| ||||  ||||||||||||||||||| ||||||||| | |||||||||||| |||| |    
T  41871825 gtccaaaaaacgtttgttcttcagttcttaccaccggccaacgtgcgtgagttaactcgcgcataggc-cagtggtgcgttacttaagtcacacagaggt 41871727  T
Q  287 tgtgaggtgcgtgagttaagtca 309  Q
    | | |||||||  ||||||||||    
T  41871726 tataaggtgcgcaagttaagtca 41871704  T

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Target: chr1; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 380 - 471
Target Start/End: Original strand, 12067972 - 12068063
Alignment:
Q  380 acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||||||||||||||||    |||  ||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  12067972 acttgcgcagcgttagttaactactgtatacatttacactttcgttagttaactaacgcaaggataaatttggaacggctgcagggcgcgag 12068063  T

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Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 49000774 - 49000863
Alignment:
Q  382 ttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||| |||||||||||| | ||||  ||| ||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||    
T  49000774 ttgcgcagtgttagttaactagcgcatacatttacacttgcgtgagttaactagtgcaagggtaaatttagaacggctacagggcgcgag 49000863  T

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Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 406 - 471
Target Start/End: Complemental strand, 43514431 - 43514366
Alignment:
Q  406 catagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||    
T  43514431 catagttttacacttgcgttagttaactaacgcaagggtaaatttaaaacggctgcaggacgcgag 43514366  T

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Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 33296540 - 33296454
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||| ||||||||||||| | ||||  ||| ||||||||| ||||||||| |||||||||||||||||||| | || ||||||||||    
T  33296540 cgcaacgttagttaactagcgcatacatttacacttgcgtgagttaactaacgcaagggtaaatttggaacagatgtagggcgcgag 33296454  T

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Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 3660178 - 3660292
Alignment:
Q  194 aaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgagg 293  Q
    |||||||||| |||||| | | | ||||||||||  ||||  ||||||||||||||||||| || |||||| |||||||||||||  ||||||| | |||    
T  3660178 aaacgtttgttcttcagctctgaccaccggccaaggtgcgtgagttaactcgcgcataggc-caatggtgcgtgacttaagtcacgcagagcttataagg 3660276  T
Q  294 tgcgtgagttaagtca 309  Q
    ||||  ||||||||||    
T  3660277 tgcgctagttaagtca 3660292  T

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Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 30703149 - 30703078
Alignment:
Q  317 ttaactcacgcaatgtattacacttgcacaacttaattgacgcagcctcacacaatgttttacacttgcgca 388  Q
    |||||||||||| ||| |||||||||| |||||||||||  | |||||||| || |||||||||||||||||    
T  30703149 ttaactcacgcagtgttttacacttgcgcaacttaattgttgtagcctcacgcagtgttttacacttgcgca 30703078  T

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Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 9355412 - 9355453
Alignment:
Q  406 catagtttttcacttgcgttagttaactagcgcaagggtaaa 447  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  9355412 catagttttacacttgcgttagttaactagcgcaagggtaaa 9355453  T

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Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 21482964 - 21482877
Alignment:
Q  221 cggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    |||||||| ||||  |||||||||| ||||||||| |||||||| |||||||||||||  ||||||| | ||||| || ||||||||||    
T  21482964 cggccaacgtgcgtgagttaactcgtgcataggct-agtggtgcgtgacttaagtcacgcagagcttataaggtgtgttagttaagtca 21482877  T

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Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 45053369 - 45053425
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaa 142  Q
    |||||||||||||||||||||| ||  |||||||| || ||||||||||||||||||    
T  45053369 tttttataggtggtataatgtagataacacttaataaggtccaaaaacgtgtgaaaa 45053425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 5770587 - 5770677
Alignment:
Q  218 caccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    ||||||||| ||||||  ||||| |||||||| |||| ||||||||| ||||||||| |||  | ||||| | |||||||||||||||||||    
T  5770587 caccggccaccttgcgtgagttagctcgcgcacaggc-cagtggtgcgtgacttaagccacgcaaagcttataaggtgcgtgagttaagtca 5770677  T

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Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 468
Target Start/End: Original strand, 23943606 - 23943685
Alignment:
Q  389 gcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgc 468  Q
    |||| ||||||||  | ||||||||| || || ||||||||||| | |||||||||| ||||||||||| ||||||||||    
T  23943606 gcgtgagttaactggcgcatagttttacagttacgttagttaacaaacgcaagggtatatttggaacggttgcagggcgc 23943685  T

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Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 48566850 - 48566760
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||| |||||||||| |||||||| | | |||| |||||| ||||  ||||||||||||||||||| ||||  ||| |||||||||||||    
T  48566850 gtccaaaaaacgtttgttcttcagttctgaccaccagccaacgtgcgtgagttaactcgcgcataggc-cagtaatgcgtgacttaagtcac 48566760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 49150717 - 49150666
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgt 137  Q
    |||||||||||||||||| ||| || |||||||||||| |||||||||||||    
T  49150717 tttttataggtggtataaggtagatagcacttaatgaggtccaaaaacgtgt 49150666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 49597285 - 49597195
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||| || ||||||| ||| |||| | | ||||| ||||| ||||  ||||||||||||||||||| ||||||||| |||||||||||||    
T  49597285 gtccaaaaatcgtttgttctttagttctgaccaccgaccaacgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcac 49597195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 471
Target Start/End: Complemental strand, 36182907 - 36182842
Alignment:
Q  406 catagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||| |||||| |||||||||||| | ||||  || |||||||| ||||||||||||||||    
T  36182907 catagttttacacttgtgttagttaactaacacaagaatatatttggaaaggctgcagggcgcgag 36182842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 471
Target Start/End: Complemental strand, 25901417 - 25901365
Alignment:
Q  419 ttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||| |||||||||| ||||||||||||||||| ||||||  ||||||||||    
T  25901417 ttgcgctagttaactaacgcaagggtaaatttggtacggctatagggcgcgag 25901365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 25901395 - 25901441
Alignment:
Q  418 cttgcgttagttaactagcgcaagggtaaatttggaacggctgcagg 464  Q
    ||||||||||||||||||||||| ||| ||||||| ||| |||||||    
T  25901395 cttgcgttagttaactagcgcaaaggtgaatttggtacgactgcagg 25901441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 16315368 - 16315404
Alignment:
Q  435 gcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  16315368 gcgcaaggataaatttggaacggctgtagggcgcgag 16315404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 20447248 - 20447168
Alignment:
Q  198 gtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||| |||||||| | | ||||| |||||| |||  |||||||||||||  |||||||| ||||| | |||||||||||    
T  20447248 gtttgttcttcagttctgaccaccgaccaactagcgtgagttaactcgcgcgaaggctcaggggtgcgtaacttaagtcac 20447168  T

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Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 20533011 - 20532931
Alignment:
Q  198 gtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||| |||||||| | | ||||| |||||| |||  |||||||||||||  |||||||| ||||| | |||||||||||    
T  20533011 gtttgttcttcagttctgaccaccgaccaactagcgtgagttaactcgcgcgaaggctcaggggtgcgtaacttaagtcac 20532931  T

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Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 86 - 471
Target Start/End: Complemental strand, 12144241 - 12143838
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |  |||||||| | |||||||||    
T  12144241 ttttcataggtggtataaggtatatggcacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaatccaatcaaacccattgactac 12144142  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| |||||||||||||  | |||    
T  12144141 cgtccaagaaacgtttgtgcttcagtttttaacactgaccaacttgcgcaagttaactcgtgcataggctcagtggtgcgtgacttaagtcacgcaaagc 12144042  T
Q  286 ttgtgaggtgcgtgagttaagtca----gcgagacttaactcacgcaatgtattacacttgcacaacttaattgacgcagcctcacacaatgttttacac 381  Q
    |||||||||||||||||||||||     ||| ||||||||||||||| ||| |||||||||| |||||||||||||||| |||||| || ||||||||||    
T  12144041 ttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcagtgttttacacttgcgcaacttaattgacgcaacctcacgcagtgttttacac 12143942  T
Q  382 ttg--------------cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcg 467  Q
    |||              |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  12143941 ttgcgcatcttaacttgcgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaaaggtaaatttagaacggctgcagggcg 12143842  T
Q  468 cgag 471  Q
    ||||    
T  12143841 cgag 12143838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 87 - 308
Target Start/End: Original strand, 1081781 - 1082002
Alignment:
Q  87 ttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactact 186  Q
    ||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||  ||||||||||||| |  |||||||||| |||||||||     
T  1081781 ttttataggtggtataaggtatatgtcatttaatgaggtccaaaaacgtgtgaaaaacttcagaaaaacgtgtaaaatccaatcaaaaccattgactacc 1081880  T
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagct 286  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||    
T  1081881 gtccaagaaacgtttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcagagct 1081980  T
Q  287 tgtgaggtgcgtgagttaagtc 308  Q
    ||||||||||||||||||||||    
T  1081981 tgtgaggtgcgtgagttaagtc 1082002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 86 - 329
Target Start/End: Original strand, 18172028 - 18172274
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||||||||| ||||| ||||||| |  |||||||||| |||||||||    
T  18172028 tttttataggtggtataaggtatatagcacttaatgaggtccaaaaacatgtgaaaaacttaagaaaa-cgtgtaaaatccaatcaaaaccattgactac 18172126  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||  |||||    
T  18172127 cgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcgcgcataagctcagtggtgcgtgacttaagtcacgcagagc 18172226  T
Q  286 ttgtgaggtgcgtgagttaagt----cagcgagacttaactcacgcaa 329  Q
    |||||| ||||||| |||||||    | ||| ||||||||||||||||    
T  18172227 ttgtgatgtgcgtgtgttaagtgacactgcgtgacttaactcacgcaa 18172274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 86 - 278
Target Start/End: Original strand, 7662096 - 7662288
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    ||||||||| |||||||| ||||||  |||||||| || ||||||||||||||||||||||| ||||||||||||| |  |||||||||| |||||||||    
T  7662096 tttttatagatggtataaggtatataacacttaataaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaatccaatcaaaaccattgactac 7662195  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
     || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  7662196 cgttcaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaaatcgcgcataggctcagtggtgcgtgacttaactcac 7662288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 150 - 308
Target Start/End: Complemental strand, 2786863 - 2786705
Alignment:
Q  150 aaaaacgtgtaacagtcaatcaaaactattgactactgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgca 249  Q
    |||||||||||| | ||||||||||  ||||||||| |||||| |||  |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2786863 aaaaacgtgtaaaattcaatcaaaatcattgactaccgtccaaaaaatatttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgca 2786764  T
Q  250 taggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtc 308  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  2786763 taggctcagtggtgcatgacttaagtcacgcagagcttgtgaggtgcgtgagttaagtc 2786705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 317 - 471
Target Start/End: Complemental strand, 35048871 - 35048718
Alignment:
Q  317 ttaactcacgcaatgtattacacttgcacaacttaattgacgcagcctcacacaatgttttacacttgcgcagcgttagttaactaacacatagtttttc 416  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| |||||||    
T  35048871 ttaactcacgcagtgttttacacttgcgcaacttaattgacgcagcctcacgcaatattttacacttgcgcagcgttagttaactaacgcat-gtttttc 35048773  T
Q  417 acttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||    
T  35048772 acttgcgttaattaactaacgcaagggtaaatttgaaacggctgcagggagcgag 35048718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 150 - 297
Target Start/End: Complemental strand, 34954179 - 34954032
Alignment:
Q  150 aaaaacgtgtaacagtcaatcaaaactattgactactgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgca 249  Q
    |||||||||||| |  |||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  34954179 aaaaacgtgtaaaatccaattaaaaccattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccagccaacttgtgcaagttaactcgcgca 34954080  T
Q  250 taggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcg 297  Q
    |||||||||||||||| ||||||||||||  | || ||||||||||||    
T  34954079 taggctcagtggtgcacgacttaagtcacgcatagattgtgaggtgcg 34954032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 380 - 467
Target Start/End: Complemental strand, 20883020 - 20882933
Alignment:
Q  380 acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcg 467  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20883020 acttgcgcaacgctagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcatggcg 20882933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 380 - 471
Target Start/End: Complemental strand, 29195318 - 29195227
Alignment:
Q  380 acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  29195318 acttgtgcagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggccgcagggagcgag 29195227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 43147438 - 43147541
Alignment:
Q  206 ttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaa 305  Q
    ||||||||||| ||||||||||||||||| |||||||||| | | |||||||||||||| |||||||||||||  |||| ||||||| ||||| ||||||    
T  43147438 ttcagtttttaccaccggccaacttgcgcgagttaactcgtgtagaggctcagtggtgcgtgacttaagtcacgcagagtttgtgagatgcgttagttaa 43147537  T
Q  306 gtca 309  Q
    ||||    
T  43147538 gtca 43147541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 13275023 - 13275112
Alignment:
Q  382 ttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||| ||||||||||||| ||||||  ||| ||||||||| ||||||||||||||| ||||||||| |||||| |||||||||||||    
T  13275023 ttgcgcaacgttagttaactagcacatacatttacacttgcgtgagttaactagcgcaatggtaaattttgaacggttgcagggcgcgag 13275112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 113 - 309
Target Start/End: Original strand, 40033920 - 40034117
Alignment:
Q  113 cacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaac-gtgtaacagtcaatcaaaactattgactactgtccaagaaacgtttgtgcttcagt 211  Q
    ||||||||||| || ||||||||| |||||||| |  |||||  |||||| |  |||| ||||  |||||| || |||||| |||| ||||| |||||||    
T  40033920 cacttaatgaggtctaaaaacgtgagaaaaactaaaaaaaaaaagtgtaaaac-caataaaaagcattgaccaccgtccaaaaaacatttgttcttcagt 40034018  T
Q  212 ttttaac-accggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    |||| || |||| ||||||||||| |||||||||||| | |||||||||||||| ||||||||||| |  ||   |||| |||||| ||||||||||||    
T  40034019 tttttaccaccgaccaacttgcgcgagttaactcgcgtagaggctcagtggtgcgtgacttaagtctcgcagtaattgtaaggtgcatgagttaagtca 40034117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 2743848 - 2743937
Alignment:
Q  382 ttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||||||||||||||| | ||||  ||| ||||| ||| ||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  2743848 ttgcgcagcgttagttaactagcgcatacatttacacttacgtgagttaactagcgcaaggataaatttggaacggctgcaaggcacgag 2743937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 8688277 - 8688216
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaactta 147  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  8688277 tttttataggtggtataatatatatagcacttaatgaggtccaaaaacgtgtgaaaaactta 8688216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 385 - 445
Target Start/End: Complemental strand, 40018159 - 40018099
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggta 445  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||| |||||    
T  40018159 cgcagcattagttaactaacgcatagttttacacttgcgttagttaactaacgcatgggta 40018099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 2786905 - 2786854
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgt 137  Q
    |||||||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  2786905 tttttataggtggtataaggtatatgacacttaatgaggtccaaaaacgtgt 2786854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 10532883 - 10532794
Alignment:
Q  189 ccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcaca 279  Q
    |||| |||||||||| |||||| | | | ||||||||||||||||  |||||||||||||| | || |||||||||||||||||| |||||    
T  10532883 ccaaaaaacgtttgttcttcagctctgaccaccggccaacttgcgtgagttaactcgcgcacaagc-cagtggtgcatgacttaactcaca 10532794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 34954221 - 34954170
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgt 137  Q
    |||||||||||| ||||| ||||||| ||||||||||| |||||||||||||    
T  34954221 tttttataggtgatataaggtatatgacacttaatgaggtccaaaaacgtgt 34954170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 6427374 - 6427286
Alignment:
Q  189 ccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||| |||||||||| |||||| | | | ||||||||||  ||||  ||||||||||||||||||| |||| |||| |||||||||||||    
T  6427374 ccaaaaaacgtttgttcttcagctctaatcaccggccaaggtgcgtgagttaactcgcgcataggc-cagttgtgcgtgacttaagtcac 6427286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 306
Target Start/End: Complemental strand, 16100942 - 16100855
Alignment:
Q  218 caccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaag 306  Q
    ||||||||||||||||  |||||||||||||| ||||  | |||||| |||||||||||||  ||  ||| | ||||||||||||||||    
T  16100942 caccggccaacttgcgtgagttaactcgcgcacaggc-aaatggtgcgtgacttaagtcacgcaggacttataaggtgcgtgagttaag 16100855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 471
Target Start/End: Complemental strand, 26092556 - 26092496
Alignment:
Q  411 tttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||| ||||||||||||||||||||||||||||||  || | || | ||||||||||||||    
T  26092556 ttttacacttgcgttagttaactagcgcaagggtattttcgaaatgcctgcagggcgcgag 26092496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 41758706 - 41758796
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||| |||||||||| |||||||| | | |||| |||||| |||   |||||||||||||||||| ||| |||||| ||||| |||||||    
T  41758706 gtccaaaaaacgtttgttcttcagttctgaccaccagccaacgtgcatgagttaactcgcgcatagg-tcaatggtgcgtgactcaagtcac 41758796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 309
Target Start/End: Original strand, 11125828 - 11125899
Alignment:
Q  236 agttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    |||||||||||||| | || ||||| |||||||||||||||||  ||||| | | |||||||||||||||||||    
T  11125828 agttaactcgcgcacatgc-cagtgatgcatgacttaagtcacgcagagc-tataaggtgcgtgagttaagtca 11125899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 20887908 - 20887944
Alignment:
Q  435 gcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||||||||| |||||||||||| |||||||    
T  20887908 gcgcaagggtaaatttcgaacggctgcagagcgcgag 20887944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 5e-85; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 86 - 305
Target Start/End: Original strand, 34619793 - 34620012
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |  |||||||||| |||||||||    
T  34619793 tttttataggtggtataaggtatatggcacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaatccaatcaaaaccattgactac 34619892  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||  |||||    
T  34619893 cgtccaagaaacgtttgtgcttcagtttttatcaccggccaacttgtgcaagttaactcgcgcataggctcagtagtgcgtgacttaagtcacgcagagc 34619992  T
Q  286 ttgtgaggtgcgtgagttaa 305  Q
    ||||||||||||||| ||||    
T  34619993 ttgtgaggtgcgtgacttaa 34620012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 86 - 308
Target Start/End: Original strand, 41192275 - 41192497
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||| |  |||||||||| |||||||||    
T  41192275 tttttataggtggtataaggtatatggcacttaatgagatccaaaagcgtgtgagaaacttaagaaaaacgtgtaaaatccaatcaaaaccattgactac 41192374  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||    
T  41192375 cgtccaagaaacgtttgtgctttagtttttaccaccggccaacttgcgcaagttaactcgcacataggctcagtggtgtgtgacttaagtcacacagagc 41192474  T
Q  286 ttgtgaggtgcgtgagttaagtc 308  Q
    |||||||||||||||||||||||    
T  41192475 ttgtgaggtgcgtgagttaagtc 41192497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 86 - 308
Target Start/End: Original strand, 5814427 - 5814650
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||| | ||||||||||| |||||||||    
T  5814427 tttttataggtggtataaggtatatgacacttaatgaggtccaaaaacgtgtgaaaaatttaagaaaaacgtgtaaaattcaatcaaaaccattgactac 5814526  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgactt-aagtcacatagag 284  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||  ||||    
T  5814527 cgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtataggctcagtagtgcgtgacttaaagtcacgcagag 5814626  T
Q  285 cttgtgaggtgcgtgagttaagtc 308  Q
    ||||||||||||||||||||||||    
T  5814627 cttgtgaggtgcgtgagttaagtc 5814650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 86 - 329
Target Start/End: Complemental strand, 1888113 - 1887866
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||    
T  1888113 tttttataggtggtataaggtatatagcacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaaatcaatcaaaaccattgactac 1888014  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| | ||||| | || |||||||||||||  |||||    
T  1888013 cgtccaagaaacgtttgtgcttcagtttttaccaccgggcaacttgcgcaagttaactcgcgcatatgatcagttgggcgtgacttaagtcacgcagagc 1887914  T
Q  286 ttgtgaggtgcgtgagttaagtca----gcgagacttaactcacgcaa 329  Q
    |||||||||||||| ||||||| |    ||| ||||||||||||||||    
T  1887913 ttgtgaggtgcgtgtgttaagtgacgttgcgtgacttaactcacgcaa 1887866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 86 - 297
Target Start/End: Complemental strand, 6728813 - 6728602
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||| |  |||| ||||| |||||||||    
T  6728813 tttttataggtggtataaggtatatgacacttaattaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaatccaattaaaaccattgactac 6728714  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | ||     
T  6728713 cgtccaagaaacgtctgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcacggcttaagtcacacataga 6728614  T
Q  286 ttgtgaggtgcg 297  Q
    ||||||||||||    
T  6728613 ttgtgaggtgcg 6728602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 86 - 278
Target Start/End: Original strand, 32737764 - 32737956
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||||||||| | ||||||||||| |  |||||||||| |||||||||    
T  32737764 tttttataggtggtataaagtatatagcacttaatgaggtccaaaaacatgtgaaaaacttaaggaaaacgtgtaaaaaccaatcaaaaccattgactac 32737863  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
     |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  32737864 cgtccaagaaacgtttgtgcttcagtttttaccatcggccaacttgcgcaagttaactcacgcagaggctcagtggtgcgtgacttaagtcac 32737956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 86 - 308
Target Start/End: Complemental strand, 21083962 - 21083741
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||  ||||||||||| ||||||||||||||||||| ||| ||||||||||||| |  |||| ||||  |||||||||    
T  21083962 tttttataggtggtataaggtatataacacttaatgaggtccaaaaacgtgtgaaaaatttaagaaaaacgtgtaaaaaccaattaaaatcattgactac 21083863  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||| ||   |||||||||||||  |||||    
T  21083862 cgtccaagaaacgtttgtgcttcag-ttttaccaccggccaacttgcgcaagttaacttgcgcagaggctcagttgtaagtgacttaagtcacgcagagc 21083764  T
Q  286 ttgtgaggtgcgtgagttaagtc 308  Q
    ||||||| |||||||||||||||    
T  21083763 ttgtgagatgcgtgagttaagtc 21083741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 86 - 309
Target Start/End: Original strand, 4616536 - 4616753
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    ||||| |||||||||||| ||| ||  ||||||||||| | |||||||||||| ||||      |||||||||||| |  |||||||||  |||||| ||    
T  4616536 tttttctaggtggtataaggtagataacacttaatgaggttcaaaaacgtgtggaaaa------aaaaacgtgtaaaaagcaatcaaaagcattgaccac 4616629  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||||  |||||    
T  4616630 cgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggctcagtggggcgtgacttaagtcacgcagagc 4616729  T
Q  286 ttgtgaggtgcgtgagttaagtca 309  Q
    |||||| |||||||||||||||||    
T  4616730 ttgtgaagtgcgtgagttaagtca 4616753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 86 - 309
Target Start/End: Original strand, 5290591 - 5290815
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaa--cgtgtaacagtcaatcaaaactattgact 183  Q
    |||||||||||||||||| ||| ||  ||||||||||| ||||||||||||||||| |||||  |||||  ||||||| |  |||||||||  ||||||     
T  5290591 tttttataggtggtataaggtagataacacttaatgaggtccaaaaacgtgtgaaacacttaaaaaaaaaacgtgtaaaaaccaatcaaaagcattgacc 5290690  T
Q  184 actgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacataga 283  Q
    || ||||| ||||||| |||| ||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||  |||    
T  5290691 accgtcca-gaaacgtctgtgtttcagtttttaccaccgtccaacttgcgcgagttaactcacgcataggctcagtggtgcgtgacttaagtcacgcaga 5290789  T
Q  284 gcttgtgaggtgcgtgagttaagtca 309  Q
    ||||| ||||| | ||||||||||||    
T  5290790 gcttgagaggtacatgagttaagtca 5290815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 86 - 298
Target Start/End: Original strand, 26257667 - 26257880
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaa-cgtgtaacagtcaatcaaaactattgacta 184  Q
    |||||||||||||||||| ||| || |||||||||||  |||||||||||||||||||||||  ||||| ||||||| |  |||||||||  |||||| |    
T  26257667 tttttataggtggtataaagtagatagcacttaatgatgtccaaaaacgtgtgaaaaacttaaaaaaaaacgtgtaaaaaccaatcaaaagcattgacca 26257766  T
Q  185 ctgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtgg-tgcatgacttaagtcacataga 283  Q
    |  |||| |||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||| ||||||||||| ||  |||||||||||||  |||    
T  26257767 ccatcca-gaaacgtttgtgcttcagtttttaccaccgtctaacttgcgcaagttaacttgcgcagaggctcagtggatgtgtgacttaagtcacgcaga 26257865  T
Q  284 gcttgtgaggtgcgt 298  Q
    | |||||||||||||    
T  26257866 gtttgtgaggtgcgt 26257880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 380 - 471
Target Start/End: Original strand, 19380212 - 19380303
Alignment:
Q  380 acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||||||||||||||||||| ||||  ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19380212 acttgcgcagcgttagttaactaacgcatacatttacacttgcgttagttaactagcgcaagagtaaatttggaacggctgcagggcgcgag 19380303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 166 - 309
Target Start/End: Complemental strand, 37057314 - 37057171
Alignment:
Q  166 caatcaaaactattgactactgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgca 265  Q
    |||||||||  |||||| || |||| | ||||||||||||||||||||||| ||||  | |||||||  ||||||||||||| | || || ||||||||     
T  37057314 caatcaaaagcattgaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccaactaacttgcataagttaactcgcgtaaagacttagtggtgcg 37057215  T
Q  266 tgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  37057214 tgacttaagtcacgcagagcttgtgaggtgcgtgagttaagtca 37057171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 5848088 - 5848174
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||| ||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  5848088 cgcagcgttacttaactagcgcatagttttacacttacgttagttaactagcgcaagggtaaatttggaatggctgctgggcgcgag 5848174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 363 - 465
Target Start/End: Original strand, 11816056 - 11816158
Alignment:
Q  363 ctcacacaatgttttacacttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgca 462  Q
    ||||| || |||||||||  |||||| |||||||||||||   ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  11816056 ctcacgcagtgttttacatatgcgcaacgttagttaactagtgcatagttttacacttgcgtgagttaactagcgcaagggtaaatttgaaacggctgca 11816155  T
Q  463 ggg 465  Q
    |||    
T  11816156 ggg 11816158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 309
Target Start/End: Original strand, 2195086 - 2195282
Alignment:
Q  113 cacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaa-cgtgtaacagtcaatcaaaactattgactactgtccaagaaacgtttgtgcttcagt 211  Q
    ||||||||||| ||||||||| || ||||||||||  ||||| ||||||| | ||||| ||||  |||||| || |||||| |||||||||| ||| |||    
T  2195086 cacttaatgaggtccaaaaacatgagaaaaacttaaaaaaaaacgtgtaaaaatcaataaaaagcattgaccaccgtccaa-aaacgtttgttctttagt 2195184  T
Q  212 ttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    ||||| || |||| ||||||||| |||||||||| | | | | ||||||||||  ||||||| ||    |||||||||||||| ||||||||||||||    
T  2195185 ttttaccatcggctaacttgcgcgagttaactcgggtagatgatcagtggtgcgagacttaaatcgtgcagagcttgtgaggtacgtgagttaagtca 2195282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 35151421 - 35151510
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaac 175  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |  ||||||||||    
T  35151421 tttttataggtgttataaggtatatggcacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgcgtaaaatccaatcaaaac 35151510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 29132631 - 29132750
Alignment:
Q  189 ccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttg 288  Q
    |||| |||||||||| |||||| | | | ||||||||||| ||||  ||||||||||||||||||| | ||||||| ||||||||||||| |||| |||     
T  29132631 ccaaaaaacgtttgttcttcagctctgaccaccggccaacgtgcgtgagttaactcgcgcataggc-cggtggtgcgtgacttaagtcacgtagaactta 29132729  T
Q  289 tgaggtgcgtgagttaagtca 309  Q
    | |||||||| ||||||||||    
T  29132730 taaggtgcgttagttaagtca 29132750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 468
Target Start/End: Original strand, 28036568 - 28036654
Alignment:
Q  382 ttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgc 468  Q
    ||||||||| ||||||||||| | ||||  ||| ||||||||| ||||||| |||||| | ||||||||||||||||||||||||||    
T  28036568 ttgcgcagctttagttaactagcgcatacatttacacttgcgtgagttaaccagcgcatgagtaaatttggaacggctgcagggcgc 28036654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 29908595 - 29908474
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagct 286  Q
    |||||| |||||||||| |||||||| | | ||||||||||| |||   ||||||||||||||||||| |||||| || |||||||||||||  |||| |    
T  29908595 gtccaaaaaacgtttgttcttcagttctaaccaccggccaacgtgcatgagttaactcgcgcataggc-cagtggcgcgtgacttaagtcacgcagaggt 29908497  T
Q  287 tgtgaggtgcgtgagttaagtca 309  Q
    | | |||||||  ||||||||||    
T  29908496 tataaggtgcgcaagttaagtca 29908474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 12874327 - 12874239
Alignment:
Q  195 aacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagag 284  Q
    ||||||||| |||||| | ||| |||||  ||| |||||  |||||||||||||||||| |||||||||| ||||||||||||| |||||    
T  12874327 aacgtttgttcttcagctcttaccaccgctcaagttgcgtgagttaactcgcgcatagg-tcagtggtgcgtgacttaagtcacgtagag 12874239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 467
Target Start/End: Original strand, 38807245 - 38807293
Alignment:
Q  419 ttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcg 467  Q
    |||||||| |||||||| |||||||||||||||||||||||| ||||||    
T  38807245 ttgcgttatttaactagtgcaagggtaaatttggaacggctgtagggcg 38807293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 439
Target Start/End: Original strand, 187259 - 187310
Alignment:
Q  388 agcgttagttaactaacacatagtttttcacttgcgttagttaactagcgca 439  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||||| ||||    
T  187259 agcgtttgttaactaacgcatagttttacacttgcgttagttaactaacgca 187310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 31116275 - 31116221
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgca 439  Q
    |||| ||||||||||||||||||||  ||| ||||||||||||||||||| ||||    
T  31116275 cgcaacgttagttaactaacacataaatttacacttgcgttagttaactaacgca 31116221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 6401808 - 6401763
Alignment:
Q  389 gcgttagttaactaacacatagtttttcacttgcgttagttaacta 434  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||    
T  6401808 gcgttagttaactaacacataattttatacttgcgttagttaacta 6401763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 37057407 - 37057346
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaactta 147  Q
    ||||| |||||||||||| ||| || |||||||||||| ||||| || ||||||||||||||    
T  37057407 tttttgtaggtggtataaggtagatagcacttaatgaggtccaataaggtgtgaaaaactta 37057346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 467
Target Start/End: Complemental strand, 9826775 - 9826727
Alignment:
Q  419 ttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcg 467  Q
    |||||||||||||||| |||||| ||| |||||||| ||||||||||||    
T  9826775 ttgcgttagttaactaacgcaagtgtatatttggaagggctgcagggcg 9826727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 37891823 - 37891767
Alignment:
Q  222 ggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||||| |||  |||||||||||||  |||||||||||||| |||||||||||||    
T  37891823 ggccaactagcgtgagttaactcgcgctaaggctcagtggtgcgtgacttaagtcac 37891767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 86 - 308
Target Start/End: Complemental strand, 11599208 - 11598992
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |      |||||| |||||||||    
T  11599208 tttttataggtggtataaagtatatggcacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaatgtgtaaaa------caaaaccattgactac 11599115  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||    
T  11599114 cgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcggtggtgcatgacttaagtcacgcagagc 11599015  T
Q  286 ttgtgaggtgcgtgagttaagtc 308  Q
    |||||||||||||||||||||||    
T  11599014 ttgtgaggtgcgtgagttaagtc 11598992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 86 - 308
Target Start/End: Original strand, 30634007 - 30634229
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    ||||||||| |||||||| ||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||  |||| | ||    
T  30634007 tttttatagatggtataaggtatataacacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaaatcaatcaaaagcattggccac 30634106  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| || | |||||||||||||| ||||||||||||| ||||||    
T  30634107 cgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcacgtagaggctcagtggtgcgtgacttaagtcacgtagagc 30634206  T
Q  286 ttgtgaggtgcgtgagttaagtc 308  Q
    |||||||||||||||||||||||    
T  30634207 ttgtgaggtgcgtgagttaagtc 30634229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 112 - 309
Target Start/End: Original strand, 3515136 - 3515333
Alignment:
Q  112 gcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactactgtccaagaaacgtttgtgcttcagt 211  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| |  ||||||||||||||||| || |||| | ||||||||||||| ||||    
T  3515136 gcacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaaaccaatcaaaactattgaccaccgtccgaaaaacgtttgtgctacagt 3515235  T
Q  212 ttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    ||||| |||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||  | ||||||||| |||||||||||||||||    
T  3515236 ttttaccaccggccaacttgcgcaagttaactcgcgtagaggctcagtggtgcgtgacttaagtcacgcaaagcttgtgaagtgcgtgagttaagtca 3515333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 317 - 460
Target Start/End: Original strand, 1031698 - 1031855
Alignment:
Q  317 ttaactcacgcaatgtattacacttgcacaacttaattgacgcagcctcacacaatgttttacacttgcgcagc--------------gttagttaacta 402  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |              ||| ||||||||    
T  1031698 ttaactcacgcagtgttttacacttgcgcaacttaattgacgcagcctcacgcagtgttttacacttgcgcatcttaacttgcgcattgtttgttaacta 1031797  T
Q  403 acacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctg 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1031798 acacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctg 1031855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 7527060 - 7527149
Alignment:
Q  382 ttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  7527060 ttgcgcaacgttagttaactaacacataattttacacttgcgtgagttaactagcgcaagggtaaatttagaacggctgcagggcgcgag 7527149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 35018734 - 35018823
Alignment:
Q  382 ttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||||||||||| |||| ||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||||| ||||||    
T  35018734 ttgcgcagcgttagttaaataacgcatagttttacacttgcgtgagttaactagtgcgagggtaaatttggaacggctgcaggacgcgag 35018823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 471
Target Start/End: Complemental strand, 4362062 - 4361973
Alignment:
Q  382 ttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||| ||||||||||||| | ||||||||| |||||  || ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  4362062 ttgcgcaacgttagttaactagcgcatagttttacacttatgtgagttaactaacgcaagggtaaatttagaacggttgcagggcgcgag 4361973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 23912275 - 23912365
Alignment:
Q  218 caccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    ||||||||||||||||  | |||||||||||| | || |||||||||||||||||||||||  ||||||| | |||||||||||||||||||    
T  23912275 caccggccaacttgcgtgaattaactcgcgcacatgc-cagtggtgcatgacttaagtcacgcagagcttataaggtgcgtgagttaagtca 23912365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 297
Target Start/End: Complemental strand, 319316 - 319208
Alignment:
Q  188 tccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagctt 287  Q
    ||||| |||||||||| |||||||| | | ||||  ||||| ||||  ||||||||||||||||| | |||||||||||||||||||||||| |||| ||    
T  319316 tccaaaaaacgtttgttcttcagttctgaccaccacccaacgtgcgtgagttaactcgcgcatagac-cagtggtgcatgacttaagtcacacagaggtt 319218  T
Q  288 gtgaggtgcg 297  Q
     | |||||||    
T  319217 ataaggtgcg 319208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 9929644 - 9929595
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaacta 434  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  9929644 cgcagcgttagttaactaacacatagttttacacttgcgttaattaacta 9929595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 4410235 - 4410282
Alignment:
Q  387 cagcgttagttaactaacacatagtttttcacttgcgttagttaacta 434  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  4410235 cagcgttagttaactaatacatagttttacacttgcgttagttaacta 4410282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Complemental strand, 800399 - 800344
Alignment:
Q  416 cacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||  |||||||  ||||| ||||||| |||||||||||||||||||||||    
T  800399 cacttgcgcaagttaacatgcgcaggggtaaaattggaacggctgcagggcgcgag 800344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 434
Target Start/End: Original strand, 7919335 - 7919378
Alignment:
Q  391 gttagttaactaacacatagtttttcacttgcgttagttaacta 434  Q
    |||||||||||||| ||||  |||||||||||||||||||||||    
T  7919335 gttagttaactaacgcataaattttcacttgcgttagttaacta 7919378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 13312679 - 13312558
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagct 286  Q
    |||||| ||| |||||| |||||||| | | || |||||||| | ||  |||||||||| ||  |||| ||||||| | |||||||||||||  ||||||    
T  13312679 gtccaaaaaatgtttgttcttcagttctgaccatcggccaacgtacgtgagttaactcgtgcccaggc-cagtggttcgtgacttaagtcacgcagagct 13312581  T
Q  287 tgtgaggtgcgtgagttaagtca 309  Q
    | | |||||||| ||||||||||    
T  13312580 tataaggtgcgttagttaagtca 13312558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 431
Target Start/End: Complemental strand, 32879663 - 32879621
Alignment:
Q  389 gcgttagttaactaacacatagtttttcacttgcgttagttaa 431  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||    
T  32879663 gcgttagttaagtaacacataattttacacttgcgttagttaa 32879621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 86 - 309
Target Start/End: Original strand, 49741991 - 49742214
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| || ||||||||||||| |  |||||||||| ||||||||     
T  49741991 tttttataggtggtataaggtatatggcacttaataaggtccaaaaacgtgtgaaaaacgtaagaaaaacgtgtaaaatccaatcaaaaccattgactat 49742090  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
    |||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||  |||||    
T  49742091 tgtccaagaaacgtttgtgcttcagtttctaccaccgggcaacttgcgcaagttaactcgcgcatagactcagtggtgcgtgacttaagtcacgcagagc 49742190  T
Q  286 ttgtgaggtgcgtgagttaagtca 309  Q
    ||||||||||||||||||||||||    
T  49742191 ttgtgaggtgcgtgagttaagtca 49742214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 86 - 305
Target Start/End: Complemental strand, 41650141 - 41649922
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| | ||||||||||| |  |||||||||| |||||||||    
T  41650141 tttttataggtggtataaggtatatgacacttaatgaggtccaaaaacgtgtgaaaaacttaaggaaaacgtgtaaaatccaatcaaaaccattgactac 41650042  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     ||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| |||||    
T  41650041 cgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaaattaactcgcgcataggctcagtagtgcgtgacttaagtcacacagagc 41649942  T
Q  286 ttgtgaggtgcgtgagttaa 305  Q
    |||||||||| |||||||||    
T  41649941 ttgtgaggtgtgtgagttaa 41649922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 86 - 308
Target Start/End: Original strand, 49501424 - 49501646
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||| |   ||||||||  |||||||||    
T  49501424 tttttataggtggtataaggtatatgacacttaatgaggttcaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaatctaatcaaaatcattgactac 49501523  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |||||||||||| |||||||||||||  |||||    
T  49501524 cgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcacgcataagctcagtggtgcgtgacttaagtcacgcagagc 49501623  T
Q  286 ttgtgaggtgcgtgagttaagtc 308  Q
    |||||||||||||||||||||||    
T  49501624 ttgtgaggtgcgtgagttaagtc 49501646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 86 - 279
Target Start/End: Complemental strand, 2447789 - 2447596
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |  |||||||||| |||||||||    
T  2447789 tttttataggtggtataaggtatatggcatttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaatccaatcaaaaccattgactac 2447690  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcaca 279  Q
     |||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||| ||| |||||||| |||||    
T  2447689 cgtccaagaaacgtttgtgcttcagtttttaccactggccaacttgcgccagttaactcgcgcataggcttagtgttgcgtgacttaactcaca 2447596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 86 - 278
Target Start/End: Complemental strand, 49303403 - 49303211
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||| ||| ||| ||  ||||||||||| |||||||||||||||||||||||  ||||| |||||| |  |||||||||  ||||| |||    
T  49303403 tttttataggtggtgtaaggtagataacacttaatgaggtccaaaaacgtgtgaaaaacttaaaaaaaatgtgtaaaaaccaatcaaaagcattgattac 49303304  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
     |||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||  |||||||||||||    
T  49303303 cgtcctagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcgagttaactcgcgcagaggctcagtggtgtgtgacttaagtcac 49303211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 88 - 309
Target Start/End: Complemental strand, 23029829 - 23029619
Alignment:
Q  88 tttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactactg 187  Q
    |||||||||||||||| || |||||||||||||||| |||||||||||||||||||| ||           ||| |  |||||||||| ||||||||| |    
T  23029829 tttataggtggtataaggtttatggcacttaatgaggtccaaaaacgtgtgaaaaacgta-----------taaaatccaatcaaaaccattgactaccg 23029741  T
Q  188 tccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagctt 287  Q
    |||||||||||||| || |||||||| || |||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||  | |||||    
T  23029740 tccaagaaacgtttctgtttcagtttctaccaccggccaactagggcaagttaactcccgcataggctcagtggtgcatgacttaagtcacgcaaagctt 23029641  T
Q  288 gtgaggtgcgtgagttaagtca 309  Q
     |||| ||||||||||||||||    
T  23029640 atgagatgcgtgagttaagtca 23029619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 363 - 471
Target Start/End: Complemental strand, 34437115 - 34437007
Alignment:
Q  363 ctcacacaatgttttacacttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgca 462  Q
    |||||||| ||||||||||||||||| ||||||||||||| | ||||  ||| ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  34437115 ctcacacagtgttttacacttgcgcatcgttagttaactagcgcatacatttacacttgcgtgagttaactagcgtaagggtaaatttggaacggctgca 34437016  T
Q  463 gggcgcgag 471  Q
    || ||||||    
T  34437015 ggacgcgag 34437007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 389 - 465
Target Start/End: Complemental strand, 46183048 - 46182972
Alignment:
Q  389 gcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaggg 465  Q
    |||||||||||||||| |||| |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  46183048 gcgttagttaactaacgcataattttacacttgcgttatttaactagcgcaagggtaaatttgaaacggctgcaggg 46182972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 380 - 471
Target Start/End: Original strand, 53772293 - 53772384
Alignment:
Q  380 acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||||||||| |||||||||||||| |||||||||| ||||| |||||| || ||||||||||||| |||| |||||||| ||||||    
T  53772293 acttgcgcagcgttaattaactaacacataatttttcacttacgttaattaacttgcacaagggtaaattttgaacagctgcaggacgcgag 53772384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 46637055 - 46637141
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||| ||||| ||||||| | ||||||||| || ||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  46637055 cgcatcgttacttaactagcgcatagttttacatttgcgttagttaactagcgtaaggataaatttggaacggctgcatggcgcgag 46637141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 284
Target Start/End: Complemental strand, 25574919 - 25574823
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagag 284  Q
    |||||| |||||||||| |||||||| | | ||||| ||||| ||||  ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  25574919 gtccaaaaaacgtttgttcttcagttctgaccaccgaccaacgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacacagag 25574823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 6755740 - 6755830
Alignment:
Q  218 caccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    ||||||||||||||||  |||||||||||||| | || ||||||||  |||||||||||||| | ||||| | |||||||||||||||||||    
T  6755740 caccggccaacttgcgtgagttaactcgcgcacatgc-cagtggtgtgtgacttaagtcacacaaagcttataaggtgcgtgagttaagtca 6755830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 6463088 - 6462967
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagct 286  Q
    |||||| |||| ||||| ||| || ||| | ||||||||||||||||  ||||||||| | || | || ||||||||| |||||||||||||| | ||||    
T  6463088 gtccaaaaaacatttgttcttgagctttaaccaccggccaacttgcgtgagttaactcacacacatgc-cagtggtgcgtgacttaagtcacacaaagct 6462990  T
Q  287 tgtgaggtgcgtgagttaagtca 309  Q
    | | |||||||||||||||||||    
T  6462989 tataaggtgcgtgagttaagtca 6462967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 20513561 - 20513503
Alignment:
Q  387 cagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggta 445  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||||| ||||| ||||    
T  20513561 cagcgttagttaactatcgcatagttttacacttgcgttagttaactaacgcaaaggta 20513503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 39415438 - 39415317
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagct 286  Q
    |||||| |||||||||| |||||||| | | || |||||||| ||||  ||||||||| |||| |||| ||||||||| |||||||||||||  |||| |    
T  39415438 gtccaaaaaacgtttgttcttcagttctaaccatcggccaacgtgcgtgagttaactcacgcacaggc-cagtggtgcgtgacttaagtcacgcagaggt 39415340  T
Q  287 tgtgaggtgcgtgagttaagtca 309  Q
    | | |||||||  ||||||||||    
T  39415339 tataaggtgcgcaagttaagtca 39415317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 48086935 - 48086846
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtca 277  Q
    |||||| ||||||||||   |||||| | | ||||||||||| ||||  ||||||||||||||||||| ||||||||| ||||||||||||    
T  48086935 gtccaaaaaacgtttgttagtcagttctgaccaccggccaacgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtca 48086846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 439
Target Start/End: Original strand, 54336763 - 54336806
Alignment:
Q  396 ttaactaacacatagtttttcacttgcgttagttaactagcgca 439  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||    
T  54336763 ttaactaacacatagttttacacttgcgttagttaactaacgca 54336806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 29522995 - 29522953
Alignment:
Q  382 ttgcgcagcgttagttaactaacacatagtttttcacttgcgt 424  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  29522995 ttgcgcagcgttagttaactaacgcatagttttacacttgcgt 29522953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 30842112 - 30842166
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgca 439  Q
    |||||||||||||||||||| ||||| ||| || || ||||||||||||||||||    
T  30842112 cgcagcgttagttaactaacgcataggtttacaattacgttagttaactagcgca 30842166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 29522253 - 29522206
Alignment:
Q  417 acttgcgttagttaactagcgcaagggtaaatttggaacggctgcagg 464  Q
    |||||||| | |||| |||||||| |||||||||||||||||||||||    
T  29522253 acttgcgtgaattaattagcgcaaaggtaaatttggaacggctgcagg 29522206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 33448686 - 33448636
Alignment:
Q  236 agttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagct 286  Q
    |||||||||||||  ||||||| |||||| ||||||||||||| |||||||    
T  33448686 agttaactcgcgcgaaggctcaatggtgcgtgacttaagtcacgtagagct 33448636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 470
Target Start/End: Original strand, 7789945 - 7790026
Alignment:
Q  389 gcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcga 470  Q
    ||||||||||| |||| |||| |||| ||| ||||||||||||||| || ||||| |  ||||| | ||||||||| |||||    
T  7789945 gcgttagttaagtaacgcataattttacacctgcgttagttaactaacgtaagggcatttttgggatggctgcaggacgcga 7790026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 53401547 - 53401588
Alignment:
Q  267 gacttaagtcacatagagcttgtgaggtgcgtgagttaagtc 308  Q
    ||||||||||||  ||||||| ||||||||||||||||||||    
T  53401547 gacttaagtcacgcagagcttatgaggtgcgtgagttaagtc 53401588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 86 - 305
Target Start/End: Complemental strand, 20288 - 20069
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||||||||| ||||| |||| ||||||||||||| |  |||||||||| |||||||||    
T  20288 tttttataggttgtataaggtatatggcacttaatgaggtccaaaaacgtgcgaaaagcttaagaaaaacgtgtaaaatccaatcaaaaccattgactac 20189  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  | |||    
T  20188 cgtccaagaaacgtttgtgcttcaatttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcaaagc 20089  T
Q  286 ttgtgaggtgcgtgagttaa 305  Q
    ||||||||||||||||||||    
T  20088 ttgtgaggtgcgtgagttaa 20069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 86 - 308
Target Start/End: Original strand, 4035044 - 4035266
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    ||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |  |||||||||| |||||||||    
T  4035044 tttttataggtggtatgtggtatatggcacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaatccaatcaaaaccattgactac 4035143  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  || |     
T  4035144 cgtctaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcaggga 4035243  T
Q  286 ttgtgaggtgcgtgagttaagtc 308  Q
    ||||||||||| |||||||||||    
T  4035244 ttgtgaggtgcatgagttaagtc 4035266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 86 - 303
Target Start/End: Complemental strand, 14678499 - 14678282
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||| || |||||||||||| || ||||| ||||||||||||||  |||||||||||| | ||||||||||| |||||| ||    
T  14678499 tttttataggtggtataaggtagatagcacttaatgaggtctaaaaatgtgtgaaaaacttaataaaaacgtgtaaaaatcaatcaaaaccattgaccac 14678400  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | || |||||||||||||| ||||||||||||| |||||     
T  14678399 cgtccaagaaacgtttgtgctgcagtttttaccaccggccaacttgcgcaagttaactcacacagaggctcagtggtgcgtgacttaagtcacgtagagg 14678300  T
Q  286 ttgtgaggtgcgtgagtt 303  Q
    ||||||||||||||||||    
T  14678299 ttgtgaggtgcgtgagtt 14678282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 87 - 278
Target Start/End: Complemental strand, 37450195 - 37450005
Alignment:
Q  87 ttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactact 186  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| |  |||| ||||| |||||||||     
T  37450195 ttttataggtggtataaggtatatggcacttaatgaggtccaaaaacgtgtgaaaaactaa-gaaaaacgtgtaaaatccaattaaaaccattgactacc 37450097  T
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| |||  ||||||||||||    
T  37450096 gtccaagaaacgtttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgtgcataggctcagtgatgcgcgacttaagtcac 37450005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 86 - 263
Target Start/End: Original strand, 3742262 - 3742439
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||| |   ||||||||  |||||||||    
T  3742262 tttttataggtggtataaggtatatggcatttaatgaggtccaaaaacatgtgaaaaacttaagaaaaacgtgtaaaatctaatcaaaatcattgactac 3742361  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtg 263  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  3742362 cgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcacgcataggctcagtggtg 3742439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 86 - 328
Target Start/End: Complemental strand, 39284184 - 39283938
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||| ||||||||||||| ||| ||  ||||||||||| ||||||||||||||||||||||  ||||||||||||| || |||||||||  |||||| ||    
T  39284184 ttttaataggtggtataaggtagataacacttaatgaggtccaaaaacgtgtgaaaaactttagaaaaacgtgtaaaagccaatcaaaagcattgaccac 39284085  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||| | ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| | |||||||||||||| |||||||||||||  |||||    
T  39284084 cgtcccaaaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaaattaactcgcgtagaggctcagtggtgcgtgacttaagtcacgcagagc 39283985  T
Q  286 ttgtgaggtgcgtgagttaagtca----gcgagacttaactcacgca 328  Q
    || |||||||||||||||||| ||    ||| |||||||||||||||    
T  39283984 ttatgaggtgcgtgagttaagccacgctgcgtgacttaactcacgca 39283938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 86 - 278
Target Start/End: Original strand, 40144675 - 40144867
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||| |  |||||||||| |||||||||    
T  40144675 tttttataggtggtataacgtatatgacacttaatgaggtccaaaaacgtttgaaaaacttaagaaaaacatgtaaaatccaatcaaaaccattgactac 40144774  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
     || |||| |||||||||||||||||||||| |||||||||||||||||| ||||| |||| ||||| ||||||||||| |||||||||||||    
T  40144775 ggttcaaggaacgtttgtgcttcagtttttaccaccggccaacttgcgcaggttaagtcgcacatagactcagtggtgcgtgacttaagtcac 40144867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 317 - 466
Target Start/End: Original strand, 44226436 - 44226599
Alignment:
Q  317 ttaactcacgcaatgtattacacttgcacaacttaattgacgcagcctcacacaatgttttacact--------------tgcgcagcgttagttaacta 402  Q
    |||||||||||| |||  ||||||||| ||||||||||||||||||||||| || |||||||||||              ||||||||||||||||||||    
T  44226436 ttaactcacgcagtgttctacacttgcgcaacttaattgacgcagcctcacgcagtgttttacactgccgcatcttaacttgcgcagcgttagttaacta 44226535  T
Q  403 acacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggc 466  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| ||||||    
T  44226536 acacatagtttttcacttgcgttggttaactagagcaagggtaaatttgaaacggctacagggc 44226599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 389 - 471
Target Start/End: Original strand, 432933 - 433015
Alignment:
Q  389 gcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||    
T  432933 gcgttagttaactaacgcataattttacacttgcgttagttaactagcgcaagggtaaatttgaaacggctgccgggtgcgag 433015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 8260966 - 8260828
Alignment:
Q  194 aaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgagg 293  Q
    |||||||||| | |||||| | | ||||||||||||||||  |||||||||||||| |||||||||||||| |||||||||||||  |||| || | |||    
T  8260966 aaacgtttgttcatcagttctgaccaccggccaacttgcgtgagttaactcgcgcaaaggctcagtggtgcgtgacttaagtcacgcagagattataagg 8260867  T
Q  294 tgcgtgagttaagt----cagcgagacttaactcacgca 328  Q
    ||| ||||||||||    ||||| |||||||||||||||    
T  8260866 tgcatgagttaagtcacgcagcgtgacttaactcacgca 8260828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 23943724 - 23943810
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||| ||||||||||||| | ||||||||| ||| ||||||||||||||| |||||||||| |||| |||||||||||| |||||||    
T  23943724 cgcaacgttagttaactagcgcatagttttacacctgcgttagttaactaacgcaagggtatatttagaacggctgcagagcgcgag 23943810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 470
Target Start/End: Original strand, 38458342 - 38458430
Alignment:
Q  382 ttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcga 470  Q
    |||||||||||||||||| || | ||||  ||| ||||||||| |||||||||||  |||| |||||||||||||||||||||||||||    
T  38458342 ttgcgcagcgttagttaagtagcgcatatatttacacttgcgtgagttaactagcataaggttaaatttggaacggctgcagggcgcga 38458430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 23245936 - 23246022
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||||||||| |||| || |||||  ||||| |||||||||||||| ||||||| |  ||||||| |||||||||| |||||    
T  23245936 cgcagcgttagttaagtaacgcagagtttaacacttacgttagttaactagtgcaagggcatttttggaatggctgcagggtgcgag 23246022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 46273496 - 46273557
Alignment:
Q  384 gcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggta 445  Q
    |||||||||||||||||||||||||   ||| ||||||||||||||||||| |||| |||||    
T  46273496 gcgcagcgttagttaactaacacattaatttacacttgcgttagttaactaacgcatgggta 46273557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 30362750 - 30362810
Alignment:
Q  218 caccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    ||||| |||||| |||| |||||||||||||  |||||||||||||| |||||||||||||    
T  30362750 caccgaccaactagcgcgagttaactcgcgctaaggctcagtggtgcgtgacttaagtcac 30362810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 41219376 - 41219459
Alignment:
Q  194 aaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||||||| |||||||| | | |||| |||||| ||||  ||||||||||||||||||| ||||| ||| |||||||||||||    
T  41219376 aaacgtttgttcttcagttctgaccaccagccaacgtgcgtgagttaactcgcgcataggc-cagtgatgcgtgacttaagtcac 41219459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 304
Target Start/End: Original strand, 37524153 - 37524267
Alignment:
Q  189 ccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttg 288  Q
    |||| ||||| |||| |||||||| | | |||| |||||| ||||  || ||||||||||| |||| ||||||||| |||||||||||||  |||||||     
T  37524153 ccaaaaaacggttgtacttcagttctgaccaccagccaacgtgcgtgaggtaactcgcgcacaggc-cagtggtgcgtgacttaagtcacgcagagctta 37524251  T
Q  289 tgaggtgcgtgagtta 304  Q
    | |||||||| |||||    
T  37524252 taaggtgcgttagtta 37524267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 279
Target Start/End: Original strand, 18239408 - 18239492
Alignment:
Q  194 aaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcaca 279  Q
    |||||||||| |||||||| | | ||||| ||||| ||||  ||||||||||||||||||| || || ||| ||||||||||||||    
T  18239408 aaacgtttgttcttcagttctgaccaccgaccaacgtgcgttagttaactcgcgcataggc-cattgatgcgtgacttaagtcaca 18239492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 27874050 - 27874109
Alignment:
Q  218 caccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    ||||||||||| ||||  |||||||||||||||||| |||||||||| || ||||||||||    
T  27874050 caccggccaacgtgcgtgagttaactcgcgcatagg-tcagtggtgcgtggcttaagtcac 27874109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 471
Target Start/End: Complemental strand, 30859841 - 30859781
Alignment:
Q  411 tttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||| |||||||||||||||||| ||||| ||| |  ||||||| ||||||||||||||||    
T  30859841 ttttacacttgcgttagttaacttgcgcaggggcatttttggaatggctgcagggcgcgag 30859781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 439
Target Start/End: Complemental strand, 36653321 - 36653273
Alignment:
Q  391 gttagttaactaacacatagtttttcacttgcgttagttaactagcgca 439  Q
    ||||||||||||||||| | |||| ||||||||||||||||||| ||||    
T  36653321 gttagttaactaacacacaattttacacttgcgttagttaactaacgca 36653273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 309
Target Start/End: Complemental strand, 29714359 - 29714271
Alignment:
Q  219 accggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    |||||||||| ||||  |||||||||||||  | | ||||||||||||||||||||||||  ||||| | | |||||||||| ||||||||    
T  29714359 accggccaacctgcgtgagttaactcgcgcccaag-tcagtggtgcatgacttaagtcacgcagagc-tataaggtgcgtgatttaagtca 29714271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 431
Target Start/End: Complemental strand, 31877470 - 31877428
Alignment:
Q  389 gcgttagttaactaacacatagtttttcacttgcgttagttaa 431  Q
    |||||||||||||||| |||| |||| ||||||||||||||||    
T  31877470 gcgttagttaactaacgcataattttacacttgcgttagttaa 31877428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 33803073 - 33802972
Alignment:
Q  150 aaaaacgtgtaacagtcaatcaaaactattgactactgtccaagaaa-cgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgc 248  Q
    |||||||||||| |  |||| ||||  |||||| || |||||| ||| ||||||| |||||||||| | ||||||| |||||||||  ||||||||||||    
T  33803073 aaaaacgtgtaaaaaccaataaaaagcattgaccaccgtccaaaaaaacgtttgttcttcagttttgaccaccggc-aacttgcgcgcgttaactcgcgc 33802975  T
Q  249 ata 251  Q
    |||    
T  33802974 ata 33802972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 39476619 - 39476531
Alignment:
Q  189 ccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||| |||||||||| |||||| | | | |||||||||   ||||  |||||||||||||||||||| | |||||| |||||||||||||    
T  39476619 ccaaaaaacgtttgttcttcagctctgaccaccggccatggtgcgtgagttaactcgcgcataggct-aatggtgcgtgacttaagtcac 39476531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 471
Target Start/End: Complemental strand, 11356236 - 11356200
Alignment:
Q  435 gcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  11356236 gcgcaagggtaaatttagaacggctgcagggcacgag 11356200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 30665644 - 30665700
Alignment:
Q  389 gcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggta 445  Q
    |||| ||||||||||| || | |||| |||||||| ||||||| |||||||||||||    
T  30665644 gcgtgagttaactaacgcagaattttacacttgcgctagttaattagcgcaagggta 30665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 86 - 308
Target Start/End: Complemental strand, 4322891 - 4322669
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |  |||||||||  |||| |||     
T  4322891 tttttataggtggtataaggtatatggcacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaatccaatcaaaatcattggctat 4322792  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     | ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||  ||| |    
T  4322791 cgcccaagaaacatttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacctaagttacgcagaac 4322692  T
Q  286 ttgtgaggtgcgtgagttaagtc 308  Q
    |||||||||||||||||||||||    
T  4322691 ttgtgaggtgcgtgagttaagtc 4322669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 86 - 308
Target Start/End: Complemental strand, 35161800 - 35161580
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |  |||||||||  |||||||||    
T  35161800 tttttataggtggtataaggtatatgacacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaatccaatcaaaatcattgactac 35161701  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     ||| |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||  |||||    
T  35161700 cgtctaagaaacgtttgtgcttcag-ttttaccaccggtcaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgac-taagtcacgcagagc 35161603  T
Q  286 ttgtgaggtgcgtgagttaagtc 308  Q
    |||||||||| ||| ||||||||    
T  35161602 ttgtgaggtgggtgtgttaagtc 35161580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 86 - 306
Target Start/End: Complemental strand, 9039860 - 9039640
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||| || |||||||||||| ||||||||| ||||||||||||| ||||||| ||||| |  |||||||||| |||||||||    
T  9039860 tttttataggtggtataaggtagatagcacttaatgaggtccaaaaacatgtgaaaaacttaagaaaaacatgtaaaaaccaatcaaaaccattgactac 9039761  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
      |||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||  |||||||||||||  | ||     
T  9039760 catccaagaaacgtttgtgctgtagtttttaccaccggccaacttgcgcaagttaactcgcgcagaggttcagtggtgtgtgacttaagtcacgcaaagg 9039661  T
Q  286 ttgtgaggtgcgtgagttaag 306  Q
    |||||||||||||||||||||    
T  9039660 ttgtgaggtgcgtgagttaag 9039640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 86 - 309
Target Start/End: Complemental strand, 1217986 - 1217763
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||| ||   ||||| | || |||||||||||||||||||||||  ||||| |||||| |  |||||||||  |||||| ||    
T  1217986 tttttataggtggtataaggtagataatacttattaaggtccaaaaacgtgtgaaaaacttaaaaaaaatgtgtaaaaaccaatcaaaagcattgaccac 1217887  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |||||| ||||||| |||||||||||||| | |||    
T  1217886 cgtcccagaaacgtttgtgtttcagtttttaccaccggccaacttgcgcaagtcaactcgcgcagaggctcggtggtgcgtgacttaagtcacacaaagc 1217787  T
Q  286 ttgtgaggtgcgtgagttaagtca 309  Q
    ||||||||||||||||||||||||    
T  1217786 ttgtgaggtgcgtgagttaagtca 1217763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 86 - 242
Target Start/End: Original strand, 15739599 - 15739755
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |  |||| ||||| |||| ||||    
T  15739599 tttttataggtggtataaggtatatgacacttaatgaggtccaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaatccaattaaaaccattgcctac 15739698  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaac 242  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15739699 cgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaac 15739755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 86 - 309
Target Start/End: Complemental strand, 42182858 - 42182632
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaac----gtgtaacagtcaatcaaaactattga 181  Q
    |||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||||||   |||||     |||||| |  |||||||||  |||||    
T  42182858 tttttataggtggtataaggtagatagcacttaatgaggtccaaaaacgtgtgaaaaactttaaaaaaaaaagagtgtaaaac-caatcaaaagcattga 42182760  T
Q  182 ctactgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacata 281  Q
    | ||| ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||||| ||||||| ||||| ||    
T  42182759 ccactatcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagagactcagtggtgcgtgacttaggtcacgta 42182660  T
Q  282 gagcttgtgaggtgcgtgagttaagtca 309  Q
    ||||||||||| ||||||||||||||||    
T  42182659 gagcttgtgagatgcgtgagttaagtca 42182632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 86 - 309
Target Start/End: Original strand, 5913008 - 5913231
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaac-gtgtaacagtcaatcaaaactattgacta 184  Q
    |||||||||||||||||| ||| || |||||||||||| ||||| ||||||||||||||| |  |||||  || ||| |  |||||||||  |||| |||    
T  5913008 tttttataggtggtataaggtagatagcacttaatgaggtccaacaacgtgtgaaaaactaaaaaaaaaaagtttaaaaa-caatcaaaagcattggcta 5913106  T
Q  185 ctgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagag 284  Q
    | |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||||  ||||    
T  5913107 ccgtcccagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcgagttaactcgcacagaggctcaatggtgtgtgacttaagtcacgcagag 5913206  T
Q  285 cttgtgaggtgcgtgagttaagtca 309  Q
    |||||||||||||||||||||||||    
T  5913207 cttgtgaggtgcgtgagttaagtca 5913231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 86 - 309
Target Start/End: Original strand, 4759096 - 4759323
Alignment:
Q  86 tttttataggt-ggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaactt---acgaaaaacgtgtaacagtc-aatcaaaactattg 180  Q
    ||||||||||| ||||||| ||| || |||||||||||| ||||||||||||||||    ||   |  |||||||||||| |  | ||||||||  ||||    
T  4759096 tttttataggttggtataaggtagatagcacttaatgaggtccaaaaacgtgtgaatttttttataaaaaaaacgtgtaaaaaaccaatcaaaagcattg 4759195  T
Q  181 actactgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacat 280  Q
    |  || ||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||      
T  4759196 aacaccgtcca-gaaacgtttgtgcttcagtttttaccaccgtccaacttgcgcaagttaactcgcgcagaggctcagtggtgcatgacttaagtcacgc 4759294  T
Q  281 agagcttgtgaggtgcgtgagttaagtca 309  Q
    ||||||||||||||||||| |||||||||    
T  4759295 agagcttgtgaggtgcgtgtgttaagtca 4759323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 383 - 450
Target Start/End: Original strand, 39047283 - 39047350
Alignment:
Q  383 tgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaattt 450  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  39047283 tgcgcagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaaggataaattt 39047350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 15743234 - 15743303
Alignment:
Q  239 taactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtc 308  Q
    |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  15743234 taactcgcgcataggctcagtggtgcgtgacttaagtcacgcagagcttgtgaggtgcgtgagttaagtc 15743303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 471
Target Start/End: Original strand, 41601509 - 41601677
Alignment:
Q  317 ttaactcacgcaatgtattacacttgcacaacttaattgacgcagcctcacacaatgttttacactt--------------gcgcagcgttagttaacta 402  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||| |||||| | || |||||||||              ||||||| |||||||| ||    
T  41601509 ttaactcacgcattgttttacacttgcgcaacttaattgacgcagtctcacagagtgatttacacttgcacatcttaacttgcgcagcattagttaatta 41601608  T
Q  403 acacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||||||||| ||| |||| |||||||||||||| |||||||| |||||| ||||||| |||||    
T  41601609 acacatagtttttcatttgtgttaattaactagcgcaagagtaaatttagaacggttgcagggtgcgag 41601677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 390 - 471
Target Start/End: Complemental strand, 4412707 - 4412626
Alignment:
Q  390 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||| || | ||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  4412707 cgttagttaattagcgcatagttttacacttgcgtgagttaattagcgcaaaggtaaatttggaacggctgcagggcgcgag 4412626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 5015481 - 5015395
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||||||||||| | ||||||||| ||| ||||||||||||||| |||||||||| ||||||||| | ||||| |||||||    
T  5015481 cgcagcgttagttaactagcgcatagttttacacgtgcgttagttaactaacgcaagggtatatttggaacagttgcagagcgcgag 5015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 5076257 - 5076343
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||| |||||||||||| | ||||||||| || |||||||||||||||| ||||| |||||||||| |||||||||| ||||||||    
T  5076257 cgcagtgttagttaactagcgcatagttttacatttgcgttagttaactaacgcaatggtaaatttgaaacggctgcaaggcgcgag 5076343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 86 - 249
Target Start/End: Original strand, 23810743 - 23810911
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacg------aaaaacgtgtaacagtcaatcaaaactatt 179  Q
    |||||||||||||||||| |||  | || ||||||||| ||||||||||||| ||||||||         |||| ||||||| | ||||||||||  |||    
T  23810743 tttttataggtggtataacgtaggtagcccttaatgaggtccaaaaacgtgtaaaaaactttttttttaaaaaagcgtgtaaaaatcaatcaaaagaatt 23810842  T
Q  180 gactactgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgca 249  Q
    ||| || ||||  |||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||    
T  23810843 gaccacggtccctgaaacgtttgtgcttcag-ttttaccaccgtccaacttgcgcaagttaactcacgca 23810911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 471
Target Start/End: Complemental strand, 37227065 - 37227016
Alignment:
Q  422 cgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||||||||||    
T  37227065 cgttagttaactagcacaaaggtaaatttggaatggctgcagggcgcgag 37227016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 34471587 - 34471676
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||| |||||||||| |||||||| | | ||||||||||| ||||  |||||||||||||||||   || |||||| |||||||||||||    
T  34471587 gtccaaaaaacgtttgttcttcagttctaaccaccggccaacgtgcgtgagttaactcgcgcatag--ccaatggtgcgtgacttaagtcac 34471676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 470
Target Start/End: Original strand, 36933396 - 36933450
Alignment:
Q  416 cacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcga 470  Q
    ||||||||||||||||||||||||| ||||  || |||| |||||||||||||||    
T  36933396 cacttgcgttagttaactagcgcaaaggtattttaggaatggctgcagggcgcga 36933450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 2766846 - 2766931
Alignment:
Q  177 attgactactgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggt 262  Q
    |||||| || |||||| |||||||||| |||||||||| | ||| ||||||||||||   ||||||||| ||| ||| ||||||||    
T  2766846 attgaccaccgtccaaaaaacgtttgttcttcagttttgaccactggccaacttgcgtgcgttaactcgtgcagaggttcagtggt 2766931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 5076217 - 5076261
Alignment:
Q  317 ttaactcacgcaatgtattacacttgcacaacttaattgacgcag 361  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||    
T  5076217 ttaactcacgcagtgttttacacttgcgcaacttaattgacgcag 5076261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 9512450 - 9512510
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggta 445  Q
    ||||||||||||||| ||||||| |||||  ||||||||||| ||||||| |||| |||||    
T  9512450 cgcagcgttagttaaataacacagagtttaacacttgcgttacttaactaacgcatgggta 9512510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 23542748 - 23542836
Alignment:
Q  198 gtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagctt 287  Q
    |||||| |||||||| | | ||||| ||||| |||   ||||||||||||||||||| ||||||||| ||| |||||||||  |||||||    
T  23542748 gtttgttcttcagttctgaccaccgaccaacgtgcatgagttaactcgcgcataggc-cagtggtgcgtgaattaagtcacgcagagctt 23542836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 467
Target Start/End: Complemental strand, 43532073 - 43531996
Alignment:
Q  390 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcg 467  Q
    |||||| |||||||||||||  ||| ||| ||||||||||||||| |||| |||||  || |||| |||||| |||||    
T  43532073 cgttaggtaactaacacataaatttacacctgcgttagttaactaacgcaggggtattttgggaaaggctgccgggcg 43531996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 1175603 - 1175663
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggta 445  Q
    ||||||| ||||||| |||| ||||||||  |||||||  || ||||||||||||||||||    
T  1175603 cgcagcgctagttaagtaacgcatagtttaacacttgcactacttaactagcgcaagggta 1175663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 86 - 307
Target Start/End: Complemental strand, 52789590 - 52789369
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||| ||||| ||||||  || |||| ||| |||||||||||||||| |||||| ||||||||||||| |  |||||||||| |||||||||    
T  52789590 tttttataggtgttataaggtatatatcatttaaagaggtccaaaaacgtgtgaacaacttaagaaaaacgtgtaaaaaccaatcaaaaccattgactac 52789491  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||     
T  52789490 cgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcagagt 52789391  T
Q  286 ttgtgaggtgcgtgagttaagt 307  Q
    |||||||||||||| |||||||    
T  52789390 ttgtgaggtgcgtgtgttaagt 52789369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 86 - 309
Target Start/End: Original strand, 34939251 - 34939474
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||| ||| |||||| |||||| |  ||||||||||||||||| ||    
T  34939251 tttttataggtggtataaggtagatagcacttaatgaggtccaaaaacgtgtgaaaaatttaagaaaaatgtgtaaaaaccaatcaaaactattgaccac 34939350  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     || ||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||| |||||||   |||||    
T  34939351 cgttcaagaaacgtttgtgctgcagtttttaccaccggccaacttgcggaagttaactcgcgcataggctcagtgttgcgtgacataagtcatgcagagc 34939450  T
Q  286 ttgtgaggtgcgtgagttaagtca 309  Q
    |||||||||||||| |||||||||    
T  34939451 ttgtgaggtgcgtgtgttaagtca 34939474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 86 - 305
Target Start/End: Original strand, 33985341 - 33985560
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||| ||||| ||| ||  ||||||||||  || |||||||||||||||||||| ||||||||||||| | ||||||||||| |||||| ||    
T  33985341 tttttataggtgatataaggtagataacacttaatgatgtctaaaaacgtgtgaaaaacttaagaaaaacgtgtaaaaatcaatcaaaaccattgaccac 33985440  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||  ||| ||| |||||||||||||  ||||     
T  33985441 cgtccaagaaacgtttgtgcttcagtttttactaccggccaacttgcgcaagttaactcgcgcagaggctttgtgttgcgtgacttaagtcacgcagagt 33985540  T
Q  286 ttgtgaggtgcgtgagttaa 305  Q
    ||||||||||||||||||||    
T  33985541 ttgtgaggtgcgtgagttaa 33985560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 86 - 308
Target Start/End: Complemental strand, 54703831 - 54703610
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||  ||| |||||| |||||| |  |||||||||| ||| |||||    
T  54703831 tttttataggtggtataaggtatatgacacttaatgaggtccaaaaacgtgtgaaaat-ttaagaaaaatgtgtaaaatccaatcaaaaccattaactac 54703733  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     ||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||||  ||||||||||||  |||||    
T  54703732 cgtccaagaaacgtttgttcttcagtttttaccaccgaccaacttgcgcaagttaactcgcacataggcccagtggtgcgcgacttaagtcacgcagagc 54703633  T
Q  286 ttgtgaggtgcgtgagttaagtc 308  Q
    |||||||||||||  ||||||||    
T  54703632 ttgtgaggtgcgtatgttaagtc 54703610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 86 - 296
Target Start/End: Original strand, 54808896 - 54809106
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    ||||||| |||||||||| ||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||| |  |||| ||||| |||||||||    
T  54808896 tttttattggtggtataaggtatatgacacttaatgaggtccaaaaacgtgagaaaaacttaagaaaaacgtgtaaaatccaattaaaaccattgactac 54808995  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagc 285  Q
     |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| | ||     
T  54808996 cgtccaagaaatgtttgtggttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgtgcgacttaagtcacacataga 54809095  T
Q  286 ttgtgaggtgc 296  Q
    || ||||||||    
T  54809096 ttatgaggtgc 54809106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 86 - 328
Target Start/End: Complemental strand, 42119170 - 42118923
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaa-cgtgtaacagtcaatcaaaactattgacta 184  Q
    |||||||||||||||||| ||| || ||||||| |||| ||||||||||||||||||||| |  ||||| ||||||| |  |||||||||  |||||| |    
T  42119170 tttttataggtggtataaggtagatagcacttagtgaggtccaaaaacgtgtgaaaaactaaaaaaaaaacgtgtaaaaaccaatcaaaagcattgacca 42119071  T
Q  185 ctgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagag 284  Q
    | |||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||  |||     
T  42119070 ccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggctcagtggtgcgtgacttaagtcacgcagaa 42118971  T
Q  285 cttgtgaggtgcgtgagttaagt----cagcgagacttaactcacgca 328  Q
    ||||||||||| |||||||||||    ||||| |||||||||||||||    
T  42118970 cttgtgaggtgtgtgagttaagtcacgcagcgtgacttaactcacgca 42118923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 132 - 297
Target Start/End: Original strand, 43502223 - 43502388
Alignment:
Q  132 acgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactactgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttg 231  Q
    |||||||||||||||| ||||||| ||||| |  |||||||| | ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  43502223 acgtgtgaaaaacttaagaaaaacatgtaaaatccaatcaaagccattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttg 43502322  T
Q  232 cgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcg 297  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||||    
T  43502323 cgcaagttaactcgcgcataggctcagtggtgcgcgacttaagtcacgcagagcttgtgaggtgcg 43502388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 88 - 263
Target Start/End: Complemental strand, 51243004 - 51242828
Alignment:
Q  88 tttataggtggtat-aatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactact 186  Q
    |||||||||||||| || ||||| | ||||||||||| ||| |||| |||||||||||||| ||||||||||||| |  |||||||||| |||||||||     
T  51243004 tttataggtggtattaaggtatacgacacttaatgaggtccgaaaatgtgtgaaaaacttaagaaaaacgtgtaaaatccaatcaaaaccattgactacc 51242905  T
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtg 263  Q
    |||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  51242904 gtccaaaaaacgtttatgcttcagttttgaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtg 51242828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 36046798 - 36046947
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||||||||||| | ||||||||||| |  |||||||||| |||||||||    
T  36046798 tttttataggtggtataaggtatatgacacttaatgaggtccaaaaacatgtgaaaaacttaagtaaaacgtgtaaaatccaatcaaaaccattgactac 36046897  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgca 235  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  36046898 tgtccaagaaacgtttgtgtttcagtttttaccaccgaccaacttgcgca 36046947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 113 - 328
Target Start/End: Original strand, 37694430 - 37694650
Alignment:
Q  113 cacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaac-gtgtaacagtcaatcaaaactattgactactgtccaagaaacgtttgtgcttcagt 211  Q
    ||||||||||| ||||||||||||||||||||| |  |||||  || ||| |  |||||||||  |||||| |  |||| | |||||| |||||||||||    
T  37694430 cacttaatgaggtccaaaaacgtgtgaaaaactaaaaaaaaaaagtataaaaaccaatcaaaagcattgaccatcgtcccaaaaacgtctgtgcttcagt 37694529  T
Q  212 ttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca-- 309  Q
    ||||| |||||||||||||||||| ||||||||||| | |||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||      
T  37694530 ttttaccaccggccaacttgcgcaggttaactcgcgtagaggctcagtggtgcgtgacttaagtcatgcagagcttgtgaggtgcgtgagttaagtcacg 37694629  T
Q  310 --gcgagacttaactcacgca 328  Q
      ||| |||||||||||||||    
T  37694630 ctgcgtgacttaactcacgca 37694650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 380 - 471
Target Start/End: Original strand, 22923311 - 22923402
Alignment:
Q  380 acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22923311 acttgcgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgag 22923402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 380 - 471
Target Start/End: Original strand, 22927964 - 22928055
Alignment:
Q  380 acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22927964 acttgcgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgag 22928055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 380 - 471
Target Start/End: Original strand, 22984243 - 22984334
Alignment:
Q  380 acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22984243 acttgcgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgag 22984334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 380 - 471
Target Start/End: Original strand, 22997831 - 22997922
Alignment:
Q  380 acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22997831 acttgcgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgag 22997922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 380 - 469
Target Start/End: Original strand, 12657186 - 12657275
Alignment:
Q  380 acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcg 469  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12657186 acttgcgaagcgttagttaactaacacatagtttttcacttgtgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcg 12657275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 86 - 278
Target Start/End: Complemental strand, 47020259 - 47020068
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||| | ||||||| ||| ||  ||||||| ||| ||||||||||||||||||||||   | |||||||||| |  |||||||||  |||| | ||    
T  47020259 tttttataagcggtataaggtagataacacttaacgaggtccaaaaacgtgtgaaaaacttcaaataaacgtgtaaaaaccaatcaaaagcattgtccac 47020160  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
     || || ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||    
T  47020159 cgttca-gaaacgtttttgcttcagtttttaccaccgtccaacttgcgcaagttaactcgcgcagaggctcagtggtgcgtgacttaactcac 47020068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 94 - 263
Target Start/End: Original strand, 52032598 - 52032771
Alignment:
Q  94 ggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaa----cgtgtaacagtcaatcaaaactattgactactgtc 189  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |  |||||    | ||||| |  |||||||||  ||| || || |||    
T  52032598 ggtggtataaggtatatggcacttaatgaggtccaaaaacatgtgaaaaactaaaaaaaaaaaaacttgtaaaaaccaatcaaaagcatttaccaccgtc 52032697  T
Q  190 caagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtg 263  Q
    | | |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  52032698 ccaaaaacgtttgtgctttagtttttaccaccggccaatttgcgcaagttaactcgcgcataggctcagtggtg 52032771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 86 - 275
Target Start/End: Original strand, 45042901 - 45043090
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaacgtgtaacagtcaatcaaaactattgactac 185  Q
    |||||||||||||||||| ||| ||  ||||||||||| ||||||||||||||||||  | |  |||||  ||||| |  |||||||||  ||| || ||    
T  45042901 tttttataggtggtataaggtagataacacttaatgaggtccaaaaacgtgtgaaaacttcaaaaaaaaaatgtaaaaaccaatcaaaagcattcaccac 45043000  T
Q  186 tgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagt 275  Q
     |||| | ||||||||||||||||||||||| ||||||||||||| ||||||||||||| |  | |||||||||||||| ||||||||||    
T  45043001 cgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttacgcaagttaactcacatagaggctcagtggtgcgtgacttaagt 45043090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 54185605 - 54185691
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54185605 cgcagcgttacttaactagcgcatagttttacacttgcgttagttaactagcgcaagggtaaatttgaaacggctgcagggcgcgag 54185691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 32304955 - 32304869
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| | ||||||    
T  32304955 cgcaacgttagttaactaacacatagttttacacttgcgtgagttaactagcgcaagggtaaatttagaacggctgcaagacgcgag 32304869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 317 - 471
Target Start/End: Complemental strand, 50334161 - 50334009
Alignment:
Q  317 ttaactcacgcaatgtattacacttgcacaacttaattgacgcagcctcacacaatgttttacacttgcgcagcgttagttaactaacacatagtt---t 413  Q
    ||||| |||||| ||| |||||||||| |||||||||||||||| |||||| || ||||||||||||||||| |     ||||||  | ||  |||   |    
T  50334161 ttaacccacgcagtgttttacacttgcgcaacttaattgacgcaacctcacgcagtgttttacacttgcgcatc-----ttaacttgcgcagcgttattt 50334067  T
Q  414 ttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||| |||||    
T  50334066 ttcacttgcgttagttaactagcgcaagggtaaatttggaacggttgtagggtgcgag 50334009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 45864949 - 45865035
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||| ||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||    
T  45864949 cgcagcgttacttaactaacgcatagttttacacttgcattagttaactagcgcaagagtaaatttagaacggttgcagggcgcgag 45865035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 380 - 471
Target Start/End: Original strand, 1939358 - 1939449
Alignment:
Q  380 acttgcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||| ||||||||||||||||| | |||   ||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  1939358 acttgtgcagcgttagttaactagcgcatgcatttacacttgcgttagttaactagcgtaaggataaatttggaacggctgcagggcgcgag 1939449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 271
Target Start/End: Original strand, 779343 - 779533
Alignment:
Q  86 tttttataggtggtataatgtatatggcacttaatgagctccaaaaacgtgtgaaaaacttacgaaaaa-----cgtgtaacagtcaatcaaaactattg 180  Q
    ||||||||| |||||||| ||| || |||||||||||  |||||||| |||||||||  | |  |||||     ||||||| | ||||||||||  ||||    
T  779343 tttttatagatggtataaggtagatagcacttaatgacgtccaaaaatgtgtgaaaatttaaaaaaaaaaacaacgtgtaaaaatcaatcaaaagcattg 779442  T
Q  181 actactgtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgactt 271  Q
    || || |||| | |||||||  ||||||| |||||| |||||||||||||||||||||||||| ||| | ||||||||| |||| ||||||    
T  779443 accaccgtcccaaaaacgttaatgcttcaatttttaccaccggccaacttgcgcaagttaacttgcgaagaggctcagttgtgcgtgactt 779533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 156152 - 156066
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||| ||||||| |||||| |||| ||||||||||||||||||| || |||| || |||||||| ||||||||||||||||    
T  156152 cgcagcgttaattaactagcacataattttacacttgcgttagttaactaacgtaaggatatatttggaatggctgcagggcgcgag 156066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 9242920 - 9243034
Alignment:
Q  194 aaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgagg 293  Q
    |||||||||| |||||||| | |  |||||||||||||||  |||||||||||| | |||||||||||||| |||||||||||||  |||| || | |||    
T  9242920 aaacgtttgttcttcagttctgactaccggccaacttgcgtgagttaactcgcgga-aggctcagtggtgcgtgacttaagtcacgcagagattataagg 9243018  T
Q  294 tgcgtgagttaagtca 309  Q
    || |||||||||||||    
T  9243019 tgtgtgagttaagtca 9243034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 388 - 470
Target Start/End: Original strand, 41420632 - 41420712
Alignment:
Q  388 agcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcga 470  Q
    ||||||||||||||| | ||||||||| ||  ||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  41420632 agcgttagttaactagcgcatagttttaca--tgcgttacttaactagcgcaagagtaaatttggaacggctgcatggcgcga 41420712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 21283848 - 21283799
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaacta 434  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21283848 cgcagcgttagttaactaacacatagttttacacttgcgttagttaacta 21283799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 471
Target Start/End: Complemental strand, 11660869 - 11660787
Alignment:
Q  389 gcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||| ||  ||||| | |||||||| |||||||    
T  11660869 gcgttagttaagtaacacataattttacacttgcgttagttaactaacgcaaggatatttttgggatggctgcagagcgcgag 11660787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 465
Target Start/End: Original strand, 18487114 - 18487173
Alignment:
Q  406 catagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaggg 465  Q
    ||||||||| ||||||||||||||||||| |||||||||| |||||||| |||| |||||    
T  18487114 catagttttacacttgcgttagttaactaacgcaagggtatatttggaagggctacaggg 18487173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 445
Target Start/End: Complemental strand, 42040501 - 42040446
Alignment:
Q  390 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggta 445  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||    
T  42040501 cgttagttaactaacacatagttttacacgtgcgttagttaactaacgcaggggta 42040446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 16935584 - 16935498
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||||||||| || |||| |||||  ||||||||||| ||||||||||||||||||  || |  | ||||||||||||||||    
T  16935584 cgcagcgttagttaagtagcacagagtttaacacttgcgttatttaactagcgcaagggtatcttggacaaggctgcagggcgcgag 16935498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 38131531 - 38131410
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagct 286  Q
    |||||| |||||||||| |||||||| | | ||||||| ||| ||||  |||||||||| |||||||| | ||||||| |||||||||||||| |||| |    
T  38131531 gtccaaaaaacgtttgttcttcagttgtgaccaccggctaacgtgcgtgagttaactcgtgcataggccc-gtggtgcgtgacttaagtcacacagaggt 38131433  T
Q  287 tgtgaggtgcgtgagttaagtca 309  Q
    |   |||||||  ||||||||||    
T  38131432 tagaaggtgcgcaagttaagtca 38131410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 466
Target Start/End: Original strand, 11661045 - 11661122
Alignment:
Q  389 gcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggc 466  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||| |||||||| |  ||||| | |||||||||||    
T  11661045 gcgttagttaagtaacgcataattttacacttgcgttagttaactaacgcaagggcatttttgggagggctgcagggc 11661122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 49065552 - 49065635
Alignment:
Q  194 aaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||||||| |||||| | | | ||||||||||  ||||  ||||||||||||||||||| ||||||||| |||||||||||||    
T  49065552 aaacgtttgttcttcagctctgaccaccggccaaggtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcac 49065635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 50336433 - 50336469
Alignment:
Q  435 gcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||||||||||||||||||||||||||||||||    
T  50336433 gcgcaagggtaaatttggaacggctgcagggcgcgag 50336469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 2778036 - 2777946
Alignment:
Q  218 caccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtgcgtgagttaagtca 309  Q
    ||||||||||||||||  |||||||||||||| |||| |||||| |  |||||||||| ||  ||| ||| | |||||||||||||||||||    
T  2778036 caccggccaacttgcgtgagttaactcgcgcacaggc-cagtggcgtgtgacttaagttacgcagaacttataaggtgcgtgagttaagtca 2777946  T

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Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 27761131 - 27761214
Alignment:
Q  194 aaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||||||| ||| |||| | |  |||||||||| || |  |||||||||||||||||||| |||||||| |||||||||||||    
T  27761131 aaacgtttgttcttgagttctgactaccggccaacgtgtgtgagttaactcgcgcataggct-agtggtgcgtgacttaagtcac 27761214  T

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Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 471
Target Start/End: Complemental strand, 32303890 - 32303830
Alignment:
Q  411 tttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||| ||||||||||||||||||||||||| ||||  || |||| | ||||||||||||||    
T  32303890 ttttacacttgcgttagttaactagcgcaatggtattttcggaatgcctgcagggcgcgag 32303830  T

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Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 43210231 - 43210267
Alignment:
Q  435 gcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||||||||||| |||||||||||||||||||    
T  43210231 gcgcaagggtaaatttgaaacggctgcagggcgcgag 43210267  T

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Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 274
Target Start/End: Complemental strand, 42039107 - 42039021
Alignment:
Q  187 gtccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaag 274  Q
    |||||| |||||| ||| |||||||| | | ||||||||||| ||||  |||||||||||||| |||| ||||||||| |||| ||||    
T  42039107 gtccaaaaaacgtctgttcttcagttctgaccaccggccaacgtgcgtgagttaactcgcgcacaggc-cagtggtgcgtgacataag 42039021  T

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Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 42704455 - 42704368
Alignment:
Q  384 gcgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||| |||||||||||||||||||   ||| ||||||||||||||| ||| |||| |||||  || || | | ||||||||||||||    
T  42704455 gcgcaacgttagttaactaacacattaatttacacttgcgttagttagctaacgcatgggtattttgggcaagcctgcagggcgcgag 42704368  T

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Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Complemental strand, 49063224 - 49063169
Alignment:
Q  416 cacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    |||||||| ||||||||| |||||||||||  ||||| |||||||||||| |||||    
T  49063224 cacttgcgctagttaacttgcgcaagggtatttttggcacggctgcagggtgcgag 49063169  T

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Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 1227934 - 1228024
Alignment:
Q  189 ccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcaca 279  Q
    |||| |||||||||| |||||||| | | |||||||||||| | |  |||||||||| ||  ||||||| |||||  ||||||||||||||    
T  1227934 ccaaaaaacgtttgttcttcagttctgaccaccggccaactagtgtgagttaactcgtgctaaggctcaatggtgggtgacttaagtcaca 1228024  T

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Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 445
Target Start/End: Original strand, 16936153 - 16936187
Alignment:
Q  411 tttttcacttgcgttagttaactagcgcaagggta 445  Q
    |||| ||||||||||||||||||||||||||||||    
T  16936153 ttttacacttgcgttagttaactagcgcaagggta 16936187  T

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Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 36046943 - 36046993
Alignment:
Q  245 gcgcataggctcagtggtgcatgacttaagtcacatagagcttgtgaggtg 295  Q
    ||||||||||||||||||||  ||||||||||||  | |||||||||||||    
T  36046943 gcgcataggctcagtggtgcgcgacttaagtcacgcaaagcttgtgaggtg 36046993  T

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Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 459
Target Start/End: Complemental strand, 49285608 - 49285534
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggct 459  Q
    |||| ||||| ||||||| | ||||||||| ||||||| |||||||| ||  ||||||||||||||  |||||||    
T  49285608 cgcaacgttacttaactagcgcatagttttacacttgcattagttaattaatgcaagggtaaatttaaaacggct 49285534  T

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Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 471
Target Start/End: Original strand, 5534321 - 5534353
Alignment:
Q  439 aagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||||||||||||||||||||| |||||    
T  5534321 aagggtaaatttggaacggctgcagggtgcgag 5534353  T

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Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 32935775 - 32935692
Alignment:
Q  189 ccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaa 273  Q
    |||| |||||||||| |||||| | |   ||||||||||| ||||  |||||||||||||||||||  |||||||| ||||||||    
T  32935775 ccaaaaaacgtttgttcttcagctctggccaccggccaacgtgcgtgagttaactcgcgcataggc-aagtggtgcgtgacttaa 32935692  T

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Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 50197520 - 50197576
Alignment:
Q  386 gcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagg 442  Q
    |||||| || |||| |||||||||||||  |||||||| || |||||||||||||||    
T  50197520 gcagcgctaattaagtaacacatagtttaacacttgcgctacttaactagcgcaagg 50197576  T

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Target: scaffold0753 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 4085 - 4001
Alignment:
Q  194 aaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||||||| |||||||| | | |||||| |||||||||  |||||||||||| | |||||||||||||| |||||||||||||    
T  4085 aaacgtttgttcttcagttctgaccaccggtcaacttgcgtgagttaactcgcggaaaggctcagtggtgcgtgacttaagtcac 4001  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 185490 - 185436
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaactagcgca 439  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  185490 cgcagcgttagttaactaacgcatagttttacacttgcgttagttaactaacgca 185436  T

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Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 389 - 471
Target Start/End: Original strand, 36266 - 36348
Alignment:
Q  389 gcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgag 471  Q
    ||||||||||| |||| |||| |||| ||||||||||||||||||| |||||||| |  ||||| | ||||||||| ||||||    
T  36266 gcgttagttaagtaacgcataattttacacttgcgttagttaactaacgcaagggcatttttgggatggctgcaggacgcgag 36348  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 388 - 466
Target Start/End: Complemental strand, 256503 - 256425
Alignment:
Q  388 agcgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcagggc 466  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||||| |||| |||||  || || ||| |||||||||    
T  256503 agcgttagttaactaacacatacatttacacttgcgttagttaactaacgcatgggtattttgggcacgcctgcagggc 256425  T

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Target: scaffold0217 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 25685 - 25601
Alignment:
Q  194 aaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcac 278  Q
    |||||||||| |||||||| | | ||||||||||||||||  |||||||||||||| |||||  ||||| | || ||||||||||    
T  25685 aaacgtttgttcttcagttctgaccaccggccaacttgcgtgagttaactcgcgcaaaggctgggtggtacgtgccttaagtcac 25601  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 28649 - 28599
Alignment:
Q  389 gcgttagttaactaacacatagtttttcacttgcgttagttaactagcgca 439  Q
    |||||||||||||||| |||| |||| ||||||||||||||||||| ||||    
T  28649 gcgttagttaactaacgcataattttacacttgcgttagttaactaacgca 28599  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 33587 - 33636
Alignment:
Q  385 cgcagcgttagttaactaacacatagtttttcacttgcgttagttaacta 434  Q
    |||| ||||||||||||||| ||| ||||| |||||||||||||||||||    
T  33587 cgcaacgttagttaactaacgcattgttttacacttgcgttagttaacta 33636  T

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Target: scaffold0861 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 3721 - 3808
Alignment:
Q  189 ccaagaaacgtttgtgcttcagtttttaacaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtca 277  Q
    |||| |||||||||| ||| || ||| | ||||||||||  ||||  ||||||||||||||||||| ||||||||  ||||||||||||    
T  3721 ccaaaaaacgtttgttctttagctttgaccaccggccaaggtgcgtgagttaactcgcgcataggc-cagtggtgtgtgacttaagtca 3808  T

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