View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_24 (Length: 480)
Name: NF9040_low_24
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 117 - 464
Target Start/End: Original strand, 23279090 - 23279437
Alignment:
| Q |
117 |
atttgcataatgttgtgcataagccctttcatgctcaacatgctccttcatgcatacatcactactgcaaaagtgaaaaaagaaagataatttcttatat |
216 |
Q |
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| T |
23279090 |
atttgcataatgttgtgcataagccctttcatgctcaacatgctccttcatgcatacatcactactgcaaaagtgaaaaaagaaagataatttcttatat |
23279189 |
T |
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| Q |
217 |
agagattaattagttaatatgataatatgaggacannnnnnnnnnnnnntaaaaagcaccatccaccaggggtaaannnnnnngcagatgtgggagggtt |
316 |
Q |
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| T |
23279190 |
agagattaattagttaatatgataatatgaggacaagagaaagagagagtgaaaagcaccatccaccaggggtaaatttttttgcagatgtgggagggtt |
23279289 |
T |
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| Q |
317 |
cttgaccagcaaaacattctcctctattggttcctgtatgcggtgaacataaggacaaacattacagtagaattttgtgccaccatcatccgtagcaggt |
416 |
Q |
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| T |
23279290 |
cttgaccagcaaaacattctcctctattgattcctgtatgcggcgaacataaggacaaacattacagtagaattttgtaccaccatcatccgtagcaggt |
23279389 |
T |
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| Q |
417 |
tccaacatcagcagactatggcacattgggcaaaaatccgtcatatct |
464 |
Q |
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| T |
23279390 |
tccaacatcagcagactatggcacattgggcaaaaattcgtcatatct |
23279437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 23278986 - 23279051
Alignment:
| Q |
15 |
cacatttaagagagagcaagagatagaatatatatacatgaatagcgaaaaggcttcagaataagc |
80 |
Q |
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| T |
23278986 |
cacatttaagagagagcaagagatagaatatatatacatgaatagcgaaaaggcttcagaataagc |
23279051 |
T |
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