View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_25 (Length: 468)
Name: NF9040_low_25
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_25 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 12 - 452
Target Start/End: Original strand, 13660134 - 13660574
Alignment:
| Q |
12 |
gattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaaccagaatgtgatgcaaacttca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13660134 |
gattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaaccagaatgtgatgcaaacttca |
13660233 |
T |
|
| Q |
112 |
ccttgctctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaatttgtatgatctttattggaggtcctgatgatcatg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13660234 |
ccttgctctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaatttgtatgatctttattggaggtcctgatgatcatg |
13660333 |
T |
|
| Q |
212 |
aagccttagctgttgcatggaggatggtggggcacccaggaacccgattatcattggttcggatgctcttgtttgacgaagcagccgaagtaaatattat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13660334 |
aagccttagctgttgcatggaggatggtggggcacccaggaacccgattatcattggttcggatgctcttgtttgacgaagcagccgaagtaaatattat |
13660433 |
T |
|
| Q |
312 |
aagtcattatgaagtacaaggtgtattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcc |
411 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13660434 |
aagtcattatgaagtacaaggcatattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagca |
13660533 |
T |
|
| Q |
412 |
gtgaataacaatgattctatatcatattccgaggttgatgt |
452 |
Q |
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| T |
13660534 |
gtgaataacaatgattctatatcatattcggaggttgatgt |
13660574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 452
Target Start/End: Original strand, 13652634 - 13653074
Alignment:
| Q |
12 |
gattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaaccagaatgtgatgcaaacttca |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
13652634 |
gattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaacctgaatgtgatgcaaactgca |
13652733 |
T |
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| Q |
112 |
ccttgctctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaatttgtatgatctttattggaggtcctgatgatcatg |
211 |
Q |
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| T |
13652734 |
ccttgctctgtgggaatctttgttgatcgtaatcttgggacattaccgaaaatgaactttcgaatttgtatgatatttgttggtggccctgatgaccatg |
13652833 |
T |
|
| Q |
212 |
aagccttagctgttgcatggaggatggtggggcacccaggaacccgattatcattggttcggatgctcttgtttgacgaagcagccgaagtaaatattat |
311 |
Q |
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| T |
13652834 |
aagccttaactgttgcatggaggatggcggagcacccaagaactcgattatcagtggttcgaatgctcctgttagatgtagctgctgaagtagacactaa |
13652933 |
T |
|
| Q |
312 |
aagtcattatgaagtacaaggtgtattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcc |
411 |
Q |
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| T |
13652934 |
aagtcataatgaaacacaaggagtattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagca |
13653033 |
T |
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| Q |
412 |
gtgaataacaatgattctatatcatattccgaggttgatgt |
452 |
Q |
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| T |
13653034 |
gtgaataacaatgattttatatcctattcagaggttgatgt |
13653074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 438134 - 437713
Alignment:
| Q |
19 |
cttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaaccagaatgtgatgcaaacttcaccttgct |
118 |
Q |
| |
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||||||||||| ||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
438134 |
cttccattccacaaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaagatataaacttgaatgtgatgcaaagtgcaccttgct |
438035 |
T |
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| Q |
119 |
ctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaatttgtatgatctttattggaggtcctgatgatcatgaagcctt |
218 |
Q |
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|||||||||| ||||| || ||| ||||||||||| || ||| | || ||||| ||||||||||||||| |||| ||||||||||||| |||||||| |
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| T |
438034 |
ctgtgggaatatttgtggaccgtgatcttgggtcattaccaactttaaattttcgtatttgtatgatctttgttggtggtcctgatgatcgcgaagcctt |
437935 |
T |
|
| Q |
219 |
agctgttgcatggaggatggtggggcacccaggaacccgattatcattggttcggatgctcttgtttgacgaagcagccgaagtaaatattataagtcat |
318 |
Q |
| |
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||||||||||||||| |||| || | | |||||||| ||||||| |||||||||||||| ||||||| | || | |||| | | ||||||| |
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| T |
437934 |
agctgttgcatggagaatggcaggacgcataggaacccaattatcagtggttcggatgctcctgtttgataatgctgaaatagtagacacctcaagtcat |
437835 |
T |
|
| Q |
319 |
tatgaagtacaaggtgtattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagccgtgaata |
418 |
Q |
| |
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|||| |||||| || ||||| |||||||||||| ||||||||||||||| |||| || || ||||| ||| ||||||| ||| ||| |||| | |
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| T |
437834 |
gctgaaccacaagggatactatctattgtaatggatagtgagaagcagaaggagttagatgatgagtatgtgaatggatttagattgacagcgatgaaca |
437735 |
T |
|
| Q |
419 |
acaatgattctatatcatattc |
440 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
437734 |
acaatgattctatatcttattc |
437713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 28608770 - 28608988
Alignment:
| Q |
19 |
cttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaaccagaatgtgatgcaaacttcaccttgct |
118 |
Q |
| |
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||||||||||| ||||| ||||| | ||||||| | ||||||||| |||||| | ||||||||||||| |||||||||||||| | ||||||||| |
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| T |
28608770 |
cttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgttcaaagatataaacttgaatgtgatgcaaagtgcaccttgct |
28608869 |
T |
|
| Q |
119 |
ctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaatttgtatgatctttattggaggtcctgatgatcatgaagcctt |
218 |
Q |
| |
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|||||||| | ||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||| || |
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| T |
28608870 |
ctgtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaattttcgtatttgtatgatctttgttggaggtcctgatgatcgcgaagcatt |
28608969 |
T |
|
| Q |
219 |
agctgttgcatggaggatg |
237 |
Q |
| |
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| |||| |||||||||||| |
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| T |
28608970 |
atctgtcgcatggaggatg |
28608988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 452
Target Start/End: Original strand, 28609086 - 28609203
Alignment:
| Q |
335 |
tattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagccgtgaataacaatgattctatatc |
434 |
Q |
| |
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|||||||| |||||||||||| ||||||||| ||||| |||| || || ||||| ||| ||||||| ||| | | |||| ||||||||||||||||| |
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| T |
28609086 |
tattatctattgtaatggatagtgagaagcaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacaacaatgattctatatc |
28609185 |
T |
|
| Q |
435 |
atattccgaggttgatgt |
452 |
Q |
| |
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||||| || |||||||| |
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|
| T |
28609186 |
ttattcagaagttgatgt |
28609203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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