View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9040_low_28 (Length: 459)

Name: NF9040_low_28
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9040_low_28
NF9040_low_28
[»] chr8 (2 HSPs)
chr8 (137-444)||(8683394-8683695)
chr8 (387-439)||(29749287-29749339)
[»] chr1 (5 HSPs)
chr1 (368-440)||(24808396-24808468)
chr1 (399-442)||(4541105-4541148)
chr1 (407-439)||(8344566-8344598)
chr1 (399-439)||(15707576-15707616)
chr1 (399-431)||(49825928-49825960)
[»] chr5 (3 HSPs)
chr5 (399-442)||(40877066-40877109)
chr5 (370-440)||(40677909-40677979)
chr5 (371-442)||(42440145-42440216)
[»] chr7 (6 HSPs)
chr7 (399-440)||(34925273-34925314)
chr7 (400-442)||(6518102-6518144)
chr7 (405-439)||(8558804-8558838)
chr7 (402-444)||(24673362-24673404)
chr7 (399-439)||(19130167-19130207)
chr7 (401-441)||(34501942-34501982)
[»] chr2 (5 HSPs)
chr2 (399-440)||(38434187-38434228)
chr2 (368-428)||(45071579-45071639)
chr2 (368-439)||(27242720-27242791)
chr2 (407-442)||(41947073-41947108)
chr2 (398-439)||(27678734-27678775)
[»] chr3 (2 HSPs)
chr3 (399-433)||(24276634-24276668)
chr3 (399-439)||(44622480-44622520)
[»] chr6 (3 HSPs)
chr6 (399-440)||(507832-507873)
chr6 (400-440)||(3247406-3247446)
chr6 (395-439)||(23137478-23137522)
[»] chr4 (4 HSPs)
chr4 (399-440)||(32427058-32427099)
chr4 (394-439)||(38596787-38596832)
chr4 (391-431)||(12909574-12909614)
chr4 (400-440)||(45554117-45554157)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 137 - 444
Target Start/End: Original strand, 8683394 - 8683695
Alignment:
Q  137 cagaatcaaggactcagagaaagtgacttcagatcacgttggttagctaggaatcaaaggattcttgattcattgctttctgaatcgtcttccattatgt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8683394 cagaatcaaggactcagagaaagtgacttcagatcacgttggttagctaggaatcaaaggattcttgattcattgctttctgaatcgtcttccattatgt 8683493  T
Q  237 gcttacaggtagcaaattttgtcctttcttgactcattgctttcagaaatttgggcagtgtctcttgtaggttgtgaaatagcggatatagtggcgccag 336  Q
    |||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8683494 gcttacaggtagcaaattttgtccttt------tcattgctttcagaaatttgggcagtgtctcttgtaggttgtgaaatagcggatatagtggcgccag 8683587  T
Q  337 gcgctattttagaaaactgctattgttctgtgtgttgtcaaataacggccatagcaacgctctagcactgtagcatagcagaatttgaacaaactactat 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  8683588 gcgctattttagaaaactgctattgttctgtgtgttgtcaaataacggccatagcaacgctctagcactttagcatagcagaatttgaacaaactacaat 8683687  T
Q  437 tttctgtg 444  Q
    ||||||||    
T  8683688 tttctgtg 8683695  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 29749287 - 29749339
Alignment:
Q  387 atagcaacgctctagcactgtagcatagcagaatttgaacaaactactatttt 439  Q
    |||||| |||| |||||||||||||||||| |||||||||||| || ||||||    
T  29749287 atagcagcgctatagcactgtagcatagcaaaatttgaacaaaatattatttt 29749339  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 368 - 440
Target Start/End: Original strand, 24808396 - 24808468
Alignment:
Q  368 gtgttgtcaaataacggccatagcaacgctctagcactgtagcatagcagaatttgaacaaactactattttc 440  Q
    |||||||||||||| || |||||||  |||  ||||||||||||||||||||||||||||||| ||| |||||    
T  24808396 gtgttgtcaaataatggtcatagcagtgctaaagcactgtagcatagcagaatttgaacaaaccactgttttc 24808468  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 442
Target Start/End: Complemental strand, 4541148 - 4541105
Alignment:
Q  399 tagcactgtagcatagcagaatttgaacaaactactattttctg 442  Q
    |||| |||||||||||| |||||||||||||| |||||||||||    
T  4541148 tagcgctgtagcatagcggaatttgaacaaacaactattttctg 4541105  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 439
Target Start/End: Original strand, 8344566 - 8344598
Alignment:
Q  407 tagcatagcagaatttgaacaaactactatttt 439  Q
    |||||||||||||||||||||||| ||||||||    
T  8344566 tagcatagcagaatttgaacaaaccactatttt 8344598  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 15707616 - 15707576
Alignment:
Q  399 tagcactgtagcatagcagaatttgaacaaactactatttt 439  Q
    ||||||| ||||||||| ||||||||||||||| |||||||    
T  15707616 tagcactatagcatagcggaatttgaacaaactgctatttt 15707576  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 49825928 - 49825960
Alignment:
Q  399 tagcactgtagcatagcagaatttgaacaaact 431  Q
    ||||||||| |||||||||||||||||||||||    
T  49825928 tagcactgttgcatagcagaatttgaacaaact 49825960  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 399 - 442
Target Start/End: Complemental strand, 40877109 - 40877066
Alignment:
Q  399 tagcactgtagcatagcagaatttgaacaaactactattttctg 442  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  40877109 tagcactatagcaaagcagaatttgaacaaactactattttctg 40877066  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 440
Target Start/End: Complemental strand, 40677979 - 40677909
Alignment:
Q  370 gttgtcaaataacggccatagcaacgctctagcactgtagcatagcagaatttgaacaaactactattttc 440  Q
    ||||||||||| |||| ||| || |||| ||||||  || ||||||||||||||||||||| |||||||||    
T  40677979 gttgtcaaatagcggctataacagcgctatagcaccatatcatagcagaatttgaacaaacaactattttc 40677909  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 442
Target Start/End: Original strand, 42440145 - 42440216
Alignment:
Q  371 ttgtcaaataacggccatagcaacgctctagcactgtagcatagcagaatttgaacaaactactattttctg 442  Q
    ||||||||||  ||| ||||||  ||| || |||||||||||||| |||||||||||||| ||| |||||||    
T  42440145 ttgtcaaatagaggctatagcagtgctataacactgtagcatagcggaatttgaacaaaccactgttttctg 42440216  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 34925314 - 34925273
Alignment:
Q  399 tagcactgtagcatagcagaatttgaacaaactactattttc 440  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  34925314 tagcattgtagcatagcagaatttgaacaaactgctattttc 34925273  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 442
Target Start/End: Complemental strand, 6518144 - 6518102
Alignment:
Q  400 agcactgtagcatagcagaatttgaacaaactactattttctg 442  Q
    |||| |||||| ||||||||||||||||||| |||||||||||    
T  6518144 agcaatgtagcgtagcagaatttgaacaaaccactattttctg 6518102  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 439
Target Start/End: Complemental strand, 8558838 - 8558804
Alignment:
Q  405 tgtagcatagcagaatttgaacaaactactatttt 439  Q
    ||||||||||| |||||||||||||||||||||||    
T  8558838 tgtagcatagcggaatttgaacaaactactatttt 8558804  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 444
Target Start/End: Complemental strand, 24673404 - 24673362
Alignment:
Q  402 cactgtagcatagcagaatttgaacaaactactattttctgtg 444  Q
    |||||| ||||||| |||||||||||||| |||||||||||||    
T  24673404 cactgttgcatagctgaatttgaacaaaccactattttctgtg 24673362  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 19130207 - 19130167
Alignment:
Q  399 tagcactgtagcatagcagaatttgaacaaactactatttt 439  Q
    ||||||| |||||||||||| |||||||||||| |||||||    
T  19130207 tagcactatagcatagcagattttgaacaaactcctatttt 19130167  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 34501982 - 34501942
Alignment:
Q  401 gcactgtagcatagcagaatttgaacaaactactattttct 441  Q
    ||||| |||||||||||||  ||||||||||||||||||||    
T  34501982 gcactatagcatagcagaaactgaacaaactactattttct 34501942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 38434187 - 38434228
Alignment:
Q  399 tagcactgtagcatagcagaatttgaacaaactactattttc 440  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  38434187 tagcactgtaacatagcagaatttgaacaaactgctattttc 38434228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 45071639 - 45071579
Alignment:
Q  368 gtgttgtcaaataacggccatagcaacgctctagcactgtagcatagcagaatttgaacaa 428  Q
    ||||||||||||| | || ||||||  |||  |||||||||||||||||||||||||||||    
T  45071639 gtgttgtcaaatagcagctatagcagtgctacagcactgtagcatagcagaatttgaacaa 45071579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 439
Target Start/End: Complemental strand, 27242791 - 27242720
Alignment:
Q  368 gtgttgtcaaataacggccatagcaacgctctagcactgtagcatagcagaatttgaacaaactactatttt 439  Q
    |||||||||||||||||| ||| || | || ||||| ||||| ||||||||||||||| ||| | |||||||    
T  27242791 gtgttgtcaaataacggctataccagcactatagcattgtaggatagcagaatttgaagaaattgctatttt 27242720  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 442
Target Start/End: Complemental strand, 41947108 - 41947073
Alignment:
Q  407 tagcatagcagaatttgaacaaactactattttctg 442  Q
    |||||||||||||||||||||||| |||||||||||    
T  41947108 tagcatagcagaatttgaacaaaccactattttctg 41947073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 439
Target Start/End: Original strand, 27678734 - 27678775
Alignment:
Q  398 ctagcactgtagcatagcagaatttgaacaaactactatttt 439  Q
    ||||| || |||||||||| ||||||||||||||||||||||    
T  27678734 ctagcgctatagcatagcaaaatttgaacaaactactatttt 27678775  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 433
Target Start/End: Original strand, 24276634 - 24276668
Alignment:
Q  399 tagcactgtagcatagcagaatttgaacaaactac 433  Q
    |||||| ||||||||||||||||||||||||||||    
T  24276634 tagcacggtagcatagcagaatttgaacaaactac 24276668  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 44622520 - 44622480
Alignment:
Q  399 tagcactgtagcatagcagaatttgaacaaactactatttt 439  Q
    ||||| |||||||||||||||||||||||| || |||||||    
T  44622520 tagcattgtagcatagcagaatttgaacaagcttctatttt 44622480  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 507832 - 507873
Alignment:
Q  399 tagcactgtagcatagcagaatttgaacaaactactattttc 440  Q
    |||||||||| ||||||||||||| |||||||| ||||||||    
T  507832 tagcactgtaacatagcagaatttaaacaaactgctattttc 507873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 3247406 - 3247446
Alignment:
Q  400 agcactgtagcatagcagaatttgaacaaactactattttc 440  Q
    |||||||||||||||| |||||||||||||| ||| |||||    
T  3247406 agcactgtagcatagcggaatttgaacaaaccactgttttc 3247446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 439
Target Start/End: Complemental strand, 23137522 - 23137478
Alignment:
Q  395 gctctagcactgtagcatagcagaatttgaacaaactactatttt 439  Q
    ||||||||||||| |  ||||||||||||||||||||| ||||||    
T  23137522 gctctagcactgttgagtagcagaatttgaacaaactattatttt 23137478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 32427099 - 32427058
Alignment:
Q  399 tagcactgtagcatagcagaatttgaacaaactactattttc 440  Q
    |||||||||  ||| |||||||||||||||||||||||||||    
T  32427099 tagcactgtcacatggcagaatttgaacaaactactattttc 32427058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 38596787 - 38596832
Alignment:
Q  394 cgctctagcactgtagcatagcagaatttgaacaaactactatttt 439  Q
    |||| |||||||||| | |||||||||||||||||||| |||||||    
T  38596787 cgctatagcactgtaacgtagcagaatttgaacaaactgctatttt 38596832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 12909614 - 12909574
Alignment:
Q  391 caacgctctagcactgtagcatagcagaatttgaacaaact 431  Q
    ||||||| || ||||||||| ||||||||||||||||||||    
T  12909614 caacgctataacactgtagcgtagcagaatttgaacaaact 12909574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 45554157 - 45554117
Alignment:
Q  400 agcactgtagcatagcagaatttgaacaaactactattttc 440  Q
    ||||||||||||| ||||||||||| ||||| |||||||||    
T  45554157 agcactgtagcatggcagaatttgagcaaaccactattttc 45554117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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