View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_32 (Length: 413)
Name: NF9040_low_32
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 3566082 - 3565700
Alignment:
| Q |
17 |
acaaaggttgtgtaatctacttttcatcctcatcttcttcattatggtcttgtgttgcatcgacaaaggaaccctacgtgctagtatcatcttgcgcatt |
116 |
Q |
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| T |
3566082 |
acaaaggttgtgtaatctgctcttcatcctcatcttcttcattatggtcttgtgttgcatcgacaaaggaaccttacgtgctagtatcatcttgcgcatt |
3565983 |
T |
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| Q |
117 |
cacatctaagtctccaacataattaacttgaatgttggcctttatttccacttctatttgcaaatcttgggcctttaacagttcagcaggtgaagtgttt |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3565982 |
cacatctaagtctccaacagaattaacttgaatgttggcatttatttccacttctatttgcaaatcttgggcctttaagagttcagcaggtgaagtgttt |
3565883 |
T |
|
| Q |
217 |
ttgtcaggagtcttcacattagactgcacctcctcttgttccttatcattcttatcatttccaggtaattcctcaacattgataacttctttctcaacat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
3565882 |
ttgtcaggagtcttcacattagactgcacctcctcttgttccttatcattcttatcatttccagccaattcctcaacattgataacttctttctcgacat |
3565783 |
T |
|
| Q |
317 |
tgattacttccttacctttacccaatattctttgttctgatctcttcttcagggtgccatcttttgcaataatcaacatgatg |
399 |
Q |
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||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565782 |
tgattacttccttacctttactcagtattctctgttctgatctcttcttcagggtgccatcttttgcaataatcaacatgatg |
3565700 |
T |
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