View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9040_low_35 (Length: 388)
Name: NF9040_low_35
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 229320 - 229689
Alignment:
| Q |
1 |
ttgttactgtggcttggaaaatgctttatagaccatttgatgaaggaggcttaggtctgaaatctttaatcaaaattaatgaagcctcaaacctcaagct |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
229320 |
ttgttactatggcttggaaaatgctttatagaccatttgatgaaggaggcttaggtctgaaatctttaatcaaaattaatgaagcctcaaacctcaagct |
229419 |
T |
|
| Q |
101 |
ttgttggaatttgcttaattctgatgaaatatgggcagtcatcctaaaaaatagagttctcagatataggagacatattgttcatcatgtttcttcctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
229420 |
ttgttggaatttgcttaattctgatgaaatgtgggcagtcatcctaaaaaatagagttctcagatataggagacatattgttcatcatgtttcttcctca |
229519 |
T |
|
| Q |
201 |
atttggagcaatgtcaaaagtgaatataccacatttcatgagaattccacatgtttgttaggaaatggggaaaatatcaagttctggactaatagttggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
229520 |
atttggagcaatgtcaaaagtgaatataccacatttcatgagaattccacatgtttgttaggaaatggggaaaatatcaagttctggactgatagttggt |
229619 |
T |
|
| Q |
301 |
gtgggcctccccctttgtgaggtgtttcatattcgccctaacattcacaactctcttacttctagagtct |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
229620 |
gtgggcctccccctttgtgaggtgtttcatattcgccctaacattcacaactctcttacttctagagtct |
229689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University