View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_38 (Length: 386)
Name: NF9040_low_38
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 34565184 - 34565549
Alignment:
| Q |
18 |
cttattgcgaggatttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgatagcctataccactaacttgcaataaagttgagt |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34565184 |
cttattacgaggatttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgatagcctataccactaacttgcaataaagttgagt |
34565283 |
T |
|
| Q |
118 |
ccaaatatgaagatcgttgaagatcagtgtatggatccacataaacccaaaacttttgcaagtttttgaagtccaaatccttgactaaactttcagcccc |
217 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34565284 |
ccaaatataaagatcgttgaaaatcagtgtatggatccacataaacccaaaacttttgcaagtttttgaagtccaaatccttgactaaactttcagcccc |
34565383 |
T |
|
| Q |
218 |
cctaaatttcatctctaacaacctttagctgatgagatannnnnnncaactcgttgagcgcaacttcatttcttttccaaggaaaattgtctattctata |
317 |
Q |
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||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34565384 |
cctaaattttatctc-aacaacctttagctgatgagatatttttttcaattcgttgagcgcaacttcatttcttttccaaggaaaattgtctattctata |
34565482 |
T |
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| Q |
318 |
gtaaagttcttccaaccgagacaatcttatcaagatattatcagaaatgatgtccatctcattgcaa |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
34565483 |
gtaaagttcttccaaccgagacaatcttatcaagatattatcagaaatgatgtcaagatcattgcaa |
34565549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 34290703 - 34291046
Alignment:
| Q |
18 |
cttattgcgaggatttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgatagcctataccactaacttgcaataaagttgagt |
117 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| |||||||||| |||| | |
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| T |
34290703 |
cttattgcaaggatttcacatttcttaatcaattgtgagatcatcaatatgctattaatagattgataatcaatac-------ttgcaataaatttgact |
34290795 |
T |
|
| Q |
118 |
ccaaatatgaagatcgttgaagatcagtgtatggatccacataaacccaaaacttttgcaagtttttgaagtccaaatccttgactaaactttcagcccc |
217 |
Q |
| |
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||||||||| ||| | |||| |||| | || |||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |
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| T |
34290796 |
ccaaatatgcagagtgctgaaaatcactataaagatccacataaatccaaaacttttgcaagttgttgaaaaccaaatccttgactaaaatttcagcccc |
34290895 |
T |
|
| Q |
218 |
cctaaatttcatctctaacaacctttagctgatgagatannnnnnncaactcgttgagcgcaacttcatttcttttccaaggaaaattgtctattctata |
317 |
Q |
| |
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| || ||||||||| ||||||||||||||||||||||| ||||||||| || | | |||||||| | ||||||||||||||||| |||||| | |
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| T |
34290896 |
tccaactttcatctc-aacaacctttagctgatgagatatctttttcaactcgttcagtgaagcttcatttttcttccaaggaaaattgtccattctaaa |
34290994 |
T |
|
| Q |
318 |
gtaaagttcttccaaccgagacaatcttatcaagatattatcagaaatgatg |
369 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34290995 |
gtaaatttcttccaaccgagacaatcttatcaagacattatcagaaatgatg |
34291046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 34553513 - 34553861
Alignment:
| Q |
18 |
cttattgcgaggatttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgatagcctataccactaacttgcaataaagttgagt |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||| |||||||||||| |||| | |
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| T |
34553513 |
cttattgcaaggatttcacatttcttaatcaattgtgagaccatcaatatgctattaatagattgataatctatagcaccgacttgcaataaatttgact |
34553612 |
T |
|
| Q |
118 |
ccaaatatgaagatcgttgaagatcagtgtatggatccacataaacccaaaacttttgcaagtttttgaagtccaaatccttgactaaactttcagcccc |
217 |
Q |
| |
|
||||||||| ||| || |||| |||| | || |||||||||||| |||||||||||| | ||| | |||| ||| ||||||||| || |||||| ||| |
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| T |
34553613 |
ccaaatatgcagagcgctgaaaatcactataaagatccacataaatccaaaacttttgtaggttgtataagttcaagtccttgactgaaatttcagtccc |
34553712 |
T |
|
| Q |
218 |
cctaaatttcatctctaacaacctttagctgatgagatannnnnnncaactcgttgagcgcaacttcatttcttttccaaggaaaattgtctattctata |
317 |
Q |
| |
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|| | ||||||||| ||||||||||||||||||||||| |||||| |||| ||||| ||||||| ||| ||||||||||||||| || || | |
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| T |
34553713 |
tctgactttcatctc-aacaacctttagctgatgagatatctttttcaactcattgatcgcaatttcatttttttcccaaggaaaattgtccatccttaa |
34553811 |
T |
|
| Q |
318 |
gtaaagttcttccaaccgagacaatcttatcaagatattatcagaaatga |
367 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |||| |||||||| |
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| T |
34553812 |
ataaagttcttccaatcgagacaatcttatcaagacattagtagaaatga |
34553861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 15894875 - 15895222
Alignment:
| Q |
19 |
ttattgcgaggatttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgatagcctataccactaacttgcaataaagttgagtc |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||| |||| || |
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| T |
15894875 |
ttattgcaaggatttcacatttcttaatcacttgtgagatcatcaatatgctatttatatattgataacctatagaactaacttgcaataaatttgactc |
15894974 |
T |
|
| Q |
119 |
caaatatgaagatcgttgaagatcagtgtatggatccacataaacccaaaacttttgcaagtttttgaagtccaaatccttgactaaactttcagccccc |
218 |
Q |
| |
|
|||||||||||||| ||||| || || |||| |||||||||||||||||||||| || ||||| |||||| |||||||||||| |||| |||||| || |
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| T |
15894975 |
caaatatgaagatctttgaaaattagagtatcgatccacataaacccaaaacttctgtaagttgttgaagaccaaatccttgagtaaaatttcagtacct |
15895074 |
T |
|
| Q |
219 |
ctaaatttcatctctaacaacctttagctgatgagatannnnnnncaactcgttgagcgcaacttcatttcttttccaaggaaaattgtctattctatag |
318 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||| | |||||||||||||||| || ||| || |
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| T |
15895075 |
ctaaatttcatctc-aacaacctttagctgatgagatatctttttcagctcgttgatcgcaacttcatttttattccaaggaaaattgtacatcctaaag |
15895173 |
T |
|
| Q |
319 |
taaagttcttccaaccgagacaatcttatcaagatattatcagaaatga |
367 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||| |||||||||||||| |
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|
| T |
15895174 |
taaagttcttccaaccgaaacagtctaatcaagacattatcagaaatga |
15895222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 131283 - 130935
Alignment:
| Q |
18 |
cttattgcgaggatttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgatagcctataccactaacttgcaataaagttgagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||||| |||||||||| |||| | |
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| T |
131283 |
cttattgcgaggatttcacatttcttaatcaattgtgagatcatcagtatgctattaatagattgatagtctatagcactaatttgcaataaatttgact |
131184 |
T |
|
| Q |
118 |
ccaaatatgaagatcgttgaagatcagtgtatggatccacataaacccaaaacttttgcaagtttttgaagtccaaatccttgactaaactttcagcccc |
217 |
Q |
| |
|
| |||| || ||| || |||| |||| | || ||||||||| | |||||||||||| | || | |||||||||||||||| |||| ||||| ||| |
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|
| T |
131183 |
cgaaatgtgcagagcgctgaaaatcactataaatatccacatagatccaaaacttttgtagattgtataagtccaaatccttgattaaaacttcagtccc |
131084 |
T |
|
| Q |
218 |
cctaaatttcatctctaacaacctttagctgatgagatannnnnnncaactcgttgagcgcaacttcatttcttttccaaggaaaattgtctattctata |
317 |
Q |
| |
|
|||| ||| ||||| || ||||||||||||| ||||| |||||||||| ||||| ||||||| |||||||||||||||||| || || | |
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| T |
131083 |
tctaacttttatctc-aaagacctttagctgataagatatcttttttaactcgttgattgcaacctcatttcctttccaaggaaaattgtccatccttaa |
130985 |
T |
|
| Q |
318 |
gtaaagttcttccaaccgagacaatcttatcaagatattatcagaaatga |
367 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| |||| |||||||| |
|
|
| T |
130984 |
ataaagttcttccaatcgagacagtcttatcaagacattactagaaatga |
130935 |
T |
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