View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_39 (Length: 380)
Name: NF9040_low_39
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 362
Target Start/End: Complemental strand, 36568761 - 36568420
Alignment:
| Q |
15 |
cagagaaccgttaatggttcaaatcaaggaagaaagttattgacagaaaagggaagcagaagcagaagcagtagcaaagaaaaattattatttttctcct |
114 |
Q |
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| T |
36568761 |
cagagaatcgttaatggttcaaatcaaggaagaaagttattgacagaaaagggaagcagaagcag------tagcaaagaaaaattattatttttctcct |
36568668 |
T |
|
| Q |
115 |
tttattttaaatcttgatttataagggaagtgtgaaagatgaaacaaaacaaaagaacaaggtctttannnnnnnnnnnnttgataatgatatatctacc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36568667 |
tttattttaaatcttgatttataagggaagtgtgaaagatgaaacaaaacaaaagaacaaggtctttagtgtgtgtgtgtttgataatgatatatctacc |
36568568 |
T |
|
| Q |
215 |
tgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaatattgtc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36568567 |
tgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaatattgtc |
36568468 |
T |
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| Q |
315 |
ctttgttaagcctattattaaccatgaatcctgaacaagaatcctcac |
362 |
Q |
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| T |
36568467 |
ctttgttaagcctattattaaccatgaatcctgaacaagaatcctcac |
36568420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 324
Target Start/End: Original strand, 21038358 - 21038470
Alignment:
| Q |
212 |
acctgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaatatt |
311 |
Q |
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| T |
21038358 |
acctgcatgttgttgtatctgttgaaggttttgcagcaaacaggacaagagaattgtgtaggaccaataagaatctgagaaggagtagggatccaatact |
21038457 |
T |
|
| Q |
312 |
gtcctttgttaag |
324 |
Q |
| |
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| || |||||||| |
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| T |
21038458 |
gacccttgttaag |
21038470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 312
Target Start/End: Complemental strand, 41939469 - 41939369
Alignment:
| Q |
212 |
acctgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaatatt |
311 |
Q |
| |
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|||||||||||||| | | ||||| |||||| |||||||| |||||| ||||| || ||||||| || ||||||| ||||| |||||||||||||| |
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| T |
41939469 |
acctgcatgttgttgaaacggttgaaggttttgttgcaaacagtgcaagaaaactgggtaggaccaacaaggatttgagcaggagaagggatccaatatt |
41939370 |
T |
|
| Q |
312 |
g |
312 |
Q |
| |
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| |
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| T |
41939369 |
g |
41939369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 41937702 - 41937599
Alignment:
| Q |
206 |
atatctacctgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatcc |
305 |
Q |
| |
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|||| ||||||||||||||| ||||||||||| || ||| | |||| |||||| || ||||| |||||||| || ||||| |||| ||| |||||||||| |
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| T |
41937702 |
atatatacctgcatgttgttgtatctattgaaggtcttgaaacaaagagggcatgaaaactgtgttggaccgattagaatctgagcaggggtagggatcc |
41937603 |
T |
|
| Q |
306 |
aata |
309 |
Q |
| |
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|||| |
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| T |
41937602 |
aata |
41937599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 13518748 - 13518849
Alignment:
| Q |
221 |
ttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaatattgtcctttgt |
320 |
Q |
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||||| ||||| ||||||||||| ||||| ||||| || ||||| || || ||||||||||||||||||||||| || || |||||||| || || |||| |
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| T |
13518748 |
ttgttgtatctgttgaaagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgt |
13518847 |
T |
|
| Q |
321 |
ta |
322 |
Q |
| |
|
|| |
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|
| T |
13518848 |
ta |
13518849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 13608281 - 13608382
Alignment:
| Q |
221 |
ttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaatattgtcctttgt |
320 |
Q |
| |
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||||| ||||| ||||||||||| ||||| ||||| || ||||| || || ||||||||||||||||||||||| || || |||||||| || || |||| |
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| T |
13608281 |
ttgttgtatctgttgaaagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgt |
13608380 |
T |
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| Q |
321 |
ta |
322 |
Q |
| |
|
|| |
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|
| T |
13608381 |
ta |
13608382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 22296658 - 22296719
Alignment:
| Q |
256 |
gcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaatattgtcctt |
317 |
Q |
| |
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|||||||||||| ||||| |||||||| ||||||| ||| | ||| ||||||||||| |||| |
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| T |
22296658 |
gcaagagaactgtgttggtccaatgaggatttgagcaggtgaaggaatccaatattgacctt |
22296719 |
T |
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