View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_4 (Length: 875)
Name: NF9040_low_4
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 263 - 652
Target Start/End: Complemental strand, 45386375 - 45385990
Alignment:
| Q |
263 |
cccatttgcagcctcagattgtgactgttgttaaaattcacatgcattgtgaagcttgtgcacaggagatnnnnnnnnggatactgaaaatgaagggtac |
362 |
Q |
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| T |
45386375 |
cccatttgcagcctcagattgtgactgttgttaaaattcacatgcattgtgaagcttgtgcacaggagataaaaaaaaggatactgaaaatgaagggtac |
45386276 |
T |
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| Q |
363 |
tgtacaatatttaagtgtttttatttacaaaattatatggaattgtattttcactattaatttgttggatgttttaaaaatgagaccgaaccaattaaat |
462 |
Q |
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| T |
45386275 |
tgtacaatatttaagtctttttatttacaaaattatatagaattgtattttcactatt----tgttggatgttttaaaaatcagaccgaaccaattaaat |
45386180 |
T |
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| Q |
463 |
cattacgcgcataatattcactccacttatattattgaagtggagtaatgtaataatgaaattgattggcaggagtggaatgggtggaagctaatctgaa |
562 |
Q |
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| T |
45386179 |
cattacgcgtataatattcactccgcttatattattgaagtggagtaatgtaataatgaaattgattggcaggagtggaatgggtggaagctaatctgaa |
45386080 |
T |
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| Q |
563 |
gaactctgagttaagcgtgaagggagtgtatgattcagcaatgttggttgaatatgtgtacaagagaattgggaagcatgcagtgattgt |
652 |
Q |
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| T |
45386079 |
gaactctgaggtaagcgtgaagggagtgtatgattcagcaatgttggttgaatacatgtacaagagaattgggaagcatgcagtgattgt |
45385990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 45386624 - 45386453
Alignment:
| Q |
13 |
tggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttaagaagaagagtcacaggaaggttgagcttctttctccgatcccaat |
112 |
Q |
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| T |
45386624 |
tggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttcagaagaagagtcacaggaaggttgagcttctttctccgatcccaat |
45386525 |
T |
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| Q |
113 |
tgctcctgaggaggaaaaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
184 |
Q |
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| T |
45386524 |
tgctcctgaggaggaaaaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
45386453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 45390992 - 45390822
Alignment:
| Q |
14 |
ggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttaagaagaagagtcacaggaaggttgagcttctttctccgatcccaatt |
113 |
Q |
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| T |
45390992 |
ggtggttgtgaaaggagagaaagcggagccattgaaggttttggaaagggttcagaagaagagtcatagaaaggttgagcttctttctccgatcccaatt |
45390893 |
T |
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| Q |
114 |
gctcctgaggaggaaaaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
184 |
Q |
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| T |
45390892 |
gctcctgaggaggaaaaacctgctgaggaagagaaggctgcacctgaagaggagaagaaagatgaggtaaa |
45390822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 522 - 649
Target Start/End: Complemental strand, 45390271 - 45390144
Alignment:
| Q |
522 |
aattgattggcaggagtggaatgggtggaagctaatctgaagaactctgagttaagcgtgaagggagtgtatgattcagcaatgttggttgaatatgtgt |
621 |
Q |
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| T |
45390271 |
aattgattggcaggagtggaattggtggaaactgatctgaagaactccgaggtaagtgtgaagggggtgtatgatccagcaatgttggttgaatatgtgt |
45390172 |
T |
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| Q |
622 |
acaagagaattgggaagcatgcagtgat |
649 |
Q |
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| T |
45390171 |
acaagagaattgggaagcatgcagtgat |
45390144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 744 - 814
Target Start/End: Complemental strand, 45385898 - 45385828
Alignment:
| Q |
744 |
actaagttggaggaggagatgnnnnnnnntgaacactactttaatccaccaatcaatatgtatgcataccc |
814 |
Q |
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| T |
45385898 |
actaagttggaggaggagatgaaaaaaaatgaacactactttaatccaccaatcaatatgtatgcataccc |
45385828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 45390734 - 45390626
Alignment:
| Q |
265 |
catttgcagcctcagattgtga---ctgttgttaaaattcacatgcattgtgaagcttgtgcacaggagatnnnnnnnnggatactgaaaatgaagggta |
361 |
Q |
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|||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||| |||| |
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| T |
45390734 |
catttgcagcctcagattgtgattactgtccttaaagttcacatgcattgtgaagcttgtgcagaggaaatcaaaaaacggatacttaaaatgaatggta |
45390635 |
T |
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| Q |
362 |
ctgtacaat |
370 |
Q |
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|||| |||| |
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| T |
45390634 |
ctgtccaat |
45390626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 734600 - 734430
Alignment:
| Q |
14 |
ggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttaagaagaagagtcacaggaaggttgagcttctttctccgatcccaatt |
113 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
734600 |
ggtggttgtgaaaggagagaaagcggagccattgaaggttttggaaagggttcagaagaagagtcataggaaggttgagcttctttctccgatcccaatt |
734501 |
T |
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| Q |
114 |
gctcctgaggaggaaaaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
184 |
Q |
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| T |
734500 |
gctcctgaggaggaaaaacctgctgaggaagagaaggctgcacctgaagaggagaagaaagatgaggtaaa |
734430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 734341 - 734233
Alignment:
| Q |
265 |
catttgcagcctcagattgtga---ctgttgttaaaattcacatgcattgtgaagcttgtgcacaggagatnnnnnnnnggatactgaaaatgaagggta |
361 |
Q |
| |
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|||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||| |||| |
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| T |
734341 |
catttgcagcctcagattgtgattactgtccttaaagttcacatgcattgtgaagcttgtgcagaggaaatcaaaaaacggatacttaaaatgaatggta |
734242 |
T |
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| Q |
362 |
ctgtacaat |
370 |
Q |
| |
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|||| |||| |
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| T |
734241 |
ctgtccaat |
734233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 40578036 - 40577944
Alignment:
| Q |
19 |
ttgtgaaaggagagaaagcagagccattgaaggttttggagagggttaagaagaagagtcacaggaaggttgagcttctttctccgatcccaa |
111 |
Q |
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|||| |||||||| ||||| || |||||||||||| | || || ||| ||| ||||||||| || | ||||||||||||||||||||||||| |
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| T |
40578036 |
ttgttaaaggagaaaaagcggatccattgaaggttcttgaaagagttcagaggaagagtcatagacaagttgagcttctttctccgatcccaa |
40577944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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