View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_41 (Length: 329)
Name: NF9040_low_41
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_41 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 135272 - 134954
Alignment:
| Q |
13 |
cagagatgaaagaacgaccgag--gaaagagacatagttaagagtaagacagaaggagaaagaggcggagaaagttgtaatacctcataccaacactcga |
110 |
Q |
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| T |
135272 |
cagagatgaaagaacgaccgagaggaaagagacatagttaagagtaagacagaaggagaaagaggcggagaaagttgtaatacctcataccaacactcga |
135173 |
T |
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| Q |
111 |
tcatttattgtgtcgttgtatcacgtcattaaaaccttcatatttctcaaatttggtattttttaaagaaatttcataaagatatggggtgtataagatt |
210 |
Q |
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| T |
135172 |
tcatttattgtgtcgttgtatcacgtcattaacatcttcgtattcgtcaaatttggtattttttaaagaaatttcataaagacgtggggtgtataagatt |
135073 |
T |
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| Q |
211 |
ccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttatttgccaacattgtggcatctcaatatagcaagggaaagagctttgaccgaaac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
135072 |
ccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttattcgccgacattgtggcatctcaatatagcaagggaaagagctttgaccgaaac |
134973 |
T |
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| Q |
311 |
atttgaggctaggaagctt |
329 |
Q |
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| T |
134972 |
atttgaggctaggaagctt |
134954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 90 - 329
Target Start/End: Original strand, 34549691 - 34549931
Alignment:
| Q |
90 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaaaaccttcatatttctcaaatttggtattttttaaagaaatttcata |
188 |
Q |
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| T |
34549691 |
atacctcacaccaaacactcaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttagtattttctacataaatctcttc |
34549790 |
T |
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| Q |
189 |
aagatatggggtgtataagattccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttatttgccaacattgtggcatctcaatatagcaa |
288 |
Q |
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| T |
34549791 |
aagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctgggcagtcattaattactatcaactcacattttggcatctcaacatagcaa |
34549890 |
T |
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| Q |
289 |
gggaaagagctttgaccgaaacatttgaggctaggaagctt |
329 |
Q |
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| T |
34549891 |
gggaaatagctttcactgaaacatttgaggctaggaagctt |
34549931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 90 - 329
Target Start/End: Complemental strand, 34377689 - 34377449
Alignment:
| Q |
90 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaaaaccttcatatttctcaaatttggtattttttaaagaaatttcata |
188 |
Q |
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|||||||| ||||| ||| | |||||||||| |||||||||||||| ||||||| | |||||| | | ||||||||||||| || || | ||||| ||| |
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| T |
34377689 |
atacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctatgtcaaatttggtatcttctacacaaattctata |
34377590 |
T |
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| Q |
189 |
aagatatggggtgtataagattccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttatttgccaacattgtggcatctcaatatagcaa |
288 |
Q |
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|| | ||| ||||| |||||||| | | |||||||||||||||||||||| ||||| | |||| ||| | |||| ||||||||||| |||||| |
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| T |
34377589 |
aatacctggagtgtacaagattccattgtaccaaaaggtcttcatctctggacagtcattaattagtatccactcacatgctggcatctcaacgtagcaa |
34377490 |
T |
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| Q |
289 |
gggaaagagctttgaccgaaacatttgaggctaggaagctt |
329 |
Q |
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| T |
34377489 |
tggaaagagctttcactgaaacatttgaggctaggaagctt |
34377449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 329
Target Start/End: Original strand, 15890591 - 15890732
Alignment:
| Q |
188 |
aaagatatggggtgtataagattccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttatttgccaacattgtggcatctcaatatagca |
287 |
Q |
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| T |
15890591 |
aaagatttggtgtgtacaaggttccattgaaccaaaaagtcttcatctcatggcagtcttcaattatgattaaataacagcttggcagttcaacatagga |
15890690 |
T |
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| Q |
288 |
agggaaagagctttgaccgaaacatttgaggctaggaagctt |
329 |
Q |
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| T |
15890691 |
agggaaagagctctgagagaaacatttaaggttgggaagctt |
15890732 |
T |
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