View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_55 (Length: 266)
Name: NF9040_low_55
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 20989362 - 20989465
Alignment:
| Q |
18 |
ttttgacactataaataccatcataagttcctgaaataccaaatccacaatgcctcagaccagattaagcatgcaaagttgagtggtgaaatcacattca |
117 |
Q |
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| T |
20989362 |
ttttgacactataaataccatcataagttcctgaaataccaaatccataatgccttagaccagattaagcatgcaaagttgagtggtgaaatcacattca |
20989461 |
T |
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| Q |
118 |
atgt |
121 |
Q |
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|||| |
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| T |
20989462 |
atgt |
20989465 |
T |
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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 21000446 - 21000544
Alignment:
| Q |
23 |
acactataaataccatcataagttcctgaaataccaaatccacaatgcctcagaccagattaagcatgcaaagttgagtggtgaaatcacattcaatgt |
121 |
Q |
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| T |
21000446 |
acactataaataccatcataagttcctgaaataccaaatctacaatgccttagaccagattaagcatgcaaagttgagaggtgaaatcgcattcaatgt |
21000544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 20989528 - 20989591
Alignment:
| Q |
184 |
taaagagattaaagtagttgttcttcacattagatattatcaaagataatcctctcactgtttg |
247 |
Q |
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| T |
20989528 |
taaagagattaaagtagttgttcttcacattagatattatcaaagataatcctctcactgtttg |
20989591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 21000610 - 21000666
Alignment:
| Q |
191 |
attaaagtagttgttcttcacattagatattatcaaagataatcctctcactgtttg |
247 |
Q |
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| T |
21000610 |
attaaagtagttgttcttcacattagatattatcaaagataatcctctcactgtttg |
21000666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 20979488 - 20979593
Alignment:
| Q |
23 |
acactataaataccatcataagttcctgaaataccaaat--------ccacaatgcctcagaccagattaagcatgcaaagttgagtggtgaaatcacat |
114 |
Q |
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||||||||||||||||| |||||||||||||| |||||| ||||||| ||||| | |||||||||||| || |||| || ||||||||||||| |
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| T |
20979488 |
acactataaataccatcgtaagttcctgaaatgccaaattccctagcccacaattcctcatatcagattaagcatacatagttcagcggtgaaatcacat |
20979587 |
T |
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| Q |
115 |
tcaatg |
120 |
Q |
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|||||| |
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| T |
20979588 |
tcaatg |
20979593 |
T |
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