View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9040_low_59 (Length: 260)

Name: NF9040_low_59
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9040_low_59
NF9040_low_59
[»] chr6 (22 HSPs)
chr6 (29-189)||(23841511-23841671)
chr6 (29-193)||(23380836-23381000)
chr6 (29-193)||(18139919-18140083)
chr6 (29-193)||(22959004-22959168)
chr6 (29-193)||(23829224-23829388)
chr6 (31-189)||(12744806-12744966)
chr6 (44-193)||(14967633-14967783)
chr6 (29-177)||(24408395-24408545)
chr6 (44-192)||(25978168-25978317)
chr6 (44-193)||(21632400-21632550)
chr6 (47-172)||(32111124-32111249)
chr6 (29-173)||(28109605-28109749)
chr6 (201-246)||(12979169-12979214)
chr6 (201-246)||(14793403-14793448)
chr6 (33-93)||(12982184-12982244)
chr6 (201-246)||(12744608-12744653)
chr6 (201-246)||(18140235-18140280)
chr6 (201-246)||(23841749-23841794)
chr6 (201-244)||(13020273-13020316)
chr6 (201-246)||(22958814-22958859)
chr6 (201-246)||(23829533-23829578)
chr6 (201-246)||(23381142-23381187)
[»] chr2 (16 HSPs)
chr2 (29-193)||(31429430-31429594)
chr2 (34-193)||(9187332-9187491)
chr2 (29-193)||(16789419-16789583)
chr2 (29-173)||(24236394-24236538)
chr2 (29-173)||(25872065-25872209)
chr2 (29-192)||(13973814-13973977)
chr2 (47-173)||(25958396-25958522)
chr2 (29-173)||(1505314-1505460)
chr2 (29-189)||(45455145-45455306)
chr2 (204-246)||(1505624-1505666)
chr2 (204-246)||(16789728-16789770)
chr2 (204-246)||(25871859-25871901)
chr2 (204-246)||(31429739-31429781)
chr2 (201-246)||(9187630-9187675)
chr2 (201-246)||(25958683-25958728)
chr2 (201-246)||(45454947-45454992)
[»] chr4 (18 HSPs)
chr4 (29-194)||(19862175-19862340)
chr4 (29-193)||(19825617-19825782)
chr4 (29-193)||(5671859-5672023)
chr4 (29-193)||(27678969-27679133)
chr4 (29-173)||(56196846-56196992)
chr4 (29-189)||(49638479-49638640)
chr4 (29-149)||(39499773-39499893)
chr4 (57-189)||(15403781-15403914)
chr4 (29-111)||(3799805-3799887)
chr4 (201-246)||(26061883-26061928)
chr4 (201-246)||(56196632-56196677)
chr4 (77-128)||(22091817-22091868)
chr4 (205-246)||(649668-649709)
chr4 (201-246)||(5671675-5671720)
chr4 (201-246)||(19825423-19825468)
chr4 (201-246)||(49638793-49638838)
chr4 (202-246)||(15404068-15404112)
chr4 (201-246)||(27679280-27679325)
[»] chr3 (26 HSPs)
chr3 (29-193)||(2776866-2777030)
chr3 (29-193)||(55033639-55033804)
chr3 (29-193)||(24126871-24127035)
chr3 (29-195)||(47052807-47052974)
chr3 (29-173)||(28328751-28328895)
chr3 (29-173)||(13556506-13556650)
chr3 (29-176)||(7831660-7831810)
chr3 (29-174)||(15197108-15197255)
chr3 (44-191)||(9156362-9156510)
chr3 (29-189)||(10882864-10883025)
chr3 (70-189)||(19303384-19303503)
chr3 (29-136)||(36534691-36534799)
chr3 (52-177)||(22025657-22025783)
chr3 (29-93)||(10961395-10961459)
chr3 (29-93)||(10964904-10964968)
chr3 (201-246)||(10964513-10964558)
chr3 (47-138)||(22995576-22995668)
chr3 (201-246)||(2776678-2776723)
chr3 (201-246)||(9155915-9155960)
chr3 (201-246)||(10961006-10961051)
chr3 (201-246)||(19303656-19303701)
chr3 (201-246)||(24126684-24126729)
chr3 (201-246)||(28328545-28328590)
chr3 (201-246)||(10882666-10882711)
chr3 (202-246)||(55033954-55033998)
chr3 (201-246)||(13556301-13556346)
[»] scaffold0520 (2 HSPs)
scaffold0520 (29-193)||(11044-11208)
scaffold0520 (201-243)||(11356-11398)
[»] chr7 (14 HSPs)
chr7 (29-195)||(20594724-20594890)
chr7 (29-193)||(45289144-45289308)
chr7 (29-173)||(22231291-22231438)
chr7 (29-173)||(22255301-22255448)
chr7 (29-177)||(26137755-26137904)
chr7 (29-127)||(4543836-4543934)
chr7 (44-173)||(9275025-9275155)
chr7 (201-246)||(17865548-17865593)
chr7 (201-246)||(45289447-45289492)
chr7 (201-246)||(9275324-9275369)
chr7 (201-242)||(20594545-20594586)
chr7 (201-246)||(22231599-22231644)
chr7 (201-246)||(22255095-22255140)
chr7 (201-246)||(26461553-26461598)
[»] scaffold0043 (2 HSPs)
scaffold0043 (29-191)||(12593-12756)
scaffold0043 (202-246)||(12397-12441)
[»] chr5 (17 HSPs)
chr5 (29-191)||(22939073-22939236)
chr5 (44-193)||(19687601-19687751)
chr5 (49-193)||(30762844-30762989)
chr5 (47-193)||(2454847-2454994)
chr5 (47-193)||(26549656-26549804)
chr5 (29-193)||(21334364-21334532)
chr5 (47-193)||(28564328-28564476)
chr5 (29-177)||(34134888-34135037)
chr5 (201-246)||(22939391-22939436)
chr5 (201-246)||(34407548-34407593)
chr5 (48-193)||(35382538-35382686)
chr5 (201-246)||(19687276-19687321)
chr5 (201-246)||(30762517-30762562)
chr5 (29-81)||(2838659-2838711)
chr5 (201-246)||(21334674-21334719)
chr5 (201-246)||(26549182-26549227)
chr5 (201-246)||(28564913-28564958)
[»] chr8 (17 HSPs)
chr8 (29-193)||(33879255-33879419)
chr8 (59-190)||(23945837-23945968)
chr8 (29-193)||(23645124-23645289)
chr8 (32-192)||(12584306-12584465)
chr8 (29-173)||(25593559-25593704)
chr8 (29-173)||(38250349-38250493)
chr8 (47-193)||(31982963-31983110)
chr8 (48-176)||(17929130-17929259)
chr8 (50-184)||(39658711-39658845)
chr8 (69-193)||(22224337-22224462)
chr8 (69-193)||(22230679-22230804)
chr8 (201-247)||(23644929-23644975)
chr8 (201-243)||(12584113-12584155)
chr8 (204-246)||(25593869-25593911)
chr8 (201-246)||(33879568-33879613)
chr8 (201-242)||(23946112-23946153)
chr8 (201-246)||(31982491-31982536)
[»] scaffold0214 (2 HSPs)
scaffold0214 (33-189)||(21345-21502)
scaffold0214 (201-242)||(21157-21198)
[»] scaffold0270 (1 HSPs)
scaffold0270 (29-173)||(2063-2207)
[»] scaffold0048 (2 HSPs)
scaffold0048 (32-177)||(13853-14000)
scaffold0048 (29-177)||(27109-27258)
[»] scaffold0321 (1 HSPs)
scaffold0321 (29-193)||(4848-5013)
[»] scaffold0134 (2 HSPs)
scaffold0134 (47-193)||(8577-8724)
scaffold0134 (201-246)||(8111-8156)
[»] scaffold0005 (2 HSPs)
scaffold0005 (29-189)||(294308-294469)
scaffold0005 (201-246)||(294110-294155)
[»] chr1 (5 HSPs)
chr1 (29-193)||(49717673-49717836)
chr1 (29-193)||(21020360-21020525)
chr1 (29-93)||(22455250-22455314)
chr1 (201-246)||(49717488-49717533)
chr1 (204-246)||(47682802-47682844)
[»] scaffold0360 (2 HSPs)
scaffold0360 (47-193)||(3984-4131)
scaffold0360 (201-244)||(3563-3606)
[»] scaffold0084 (1 HSPs)
scaffold0084 (32-177)||(27337-27483)
[»] scaffold0036 (1 HSPs)
scaffold0036 (29-176)||(111921-112070)
[»] scaffold0014 (2 HSPs)
scaffold0014 (47-193)||(225321-225468)
scaffold0014 (201-246)||(224849-224894)
[»] scaffold0083 (2 HSPs)
scaffold0083 (48-189)||(27276-27418)
scaffold0083 (201-246)||(27078-27123)
[»] scaffold0037 (1 HSPs)
scaffold0037 (47-128)||(97188-97269)
[»] scaffold0035 (1 HSPs)
scaffold0035 (47-138)||(61149-61240)
[»] scaffold0126 (1 HSPs)
scaffold0126 (47-184)||(1609-1748)
[»] scaffold1755 (1 HSPs)
scaffold1755 (201-246)||(1235-1280)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 23841511 - 23841671
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23841511 ctacctatctttaattgttgtacacttcgcctttgaaagacaagtcgctcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 23841610  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacat 189  Q
     ||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  23841611 tggaaaaagtcaacaaacaatcaaattcatcaataataaacaagttcagattcaatcacat 23841671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 23380836 - 23381000
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23380836 ctacctatctttcactgccgtacacttcgcctttgaaacacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 23380935  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     ||||||| | ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  23380936 tggaaaaaatcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataaca 23381000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 18139919 - 18140083
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18139919 ctacctatctttaattgtagtatacttcgcctttgaaacacaagttactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaat 18140018  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
      |||||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  18140019 tagaaaaagtcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataaca 18140083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 22959168 - 22959004
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    ||||||||||||||||| | |||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22959168 ctacctatctttaattgccatacacttcgcttttgaaacacaggtcactcctccttttgaacctttggaataccacttgaacaaacatttgttactaaac 22959069  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     | ||||||| ||| |||||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  22959068 tgaaaaaagtcaacaaacaagcaaattcatcaataataaaaaagttcagattcaatcacataaca 22959004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 23829224 - 23829388
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    ||||||||||||||||| | |||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23829224 ctacctatctttaattgccatacacttcgcttttgaaacacaggtcactcctccttttgaacctttggaataccacttgaacaaacatttgttactaaac 23829323  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     | ||||||| ||| |||||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  23829324 tgaaaaaagtcaacaaacaagcaaattcatcaataataaaaaagttcagattcaatcacataaca 23829388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 12744966 - 12744806
Alignment:
Q  31 acctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaactttt-ggaataccacttgaacaaacatttgttactaaac 128  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12744966 acctatctttaattgtcgtacacttcgcctttgaaatcacaagtcactcctccttttgaactttttggaataccacttgaacaaacatttgttactaaac 12744867  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacat 189  Q
     |||||| || ||| || ||||||||| || |||||||||||||| ||  |||||||||||    
T  12744866 tggaaaaggtcaacaaagaagcaaattcattaataataaacaagtgcaagttcaattacat 12744806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 14967783 - 14967633
Alignment:
Q  44 tgtcgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaac 142  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||||||| |||    
T  14967783 tgtcgtacacttcgcctttgaaatacaagtcactacctccttatgaacttttggaataccacttgaacaagcaattgttactaaactggaaaaagtcaac 14967684  T
Q  143 gaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     || || ||||||  ||||||||||||||||||| ||||||||||||||||    
T  14967683 taataaacaaattcgtcaataataaacaagttcatattcaattacataaca 14967633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 24408545 - 24408395
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    |||||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||    
T  24408545 ctacctatctttaactgtagtacacttcgcctttgaaatcacaagtcactcctccttttgaacttttggaaaaccacttgaacaaatatttgtgactaaa 24408446  T
Q  128 caggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagttcag 177  Q
    | ||||||||| ||   |||||| ||||| || ||||||||||||||||||    
T  24408445 ctggaaaaagtcaagtaaacaagaaaattcattaataataaacaagttcag 24408395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 25978317 - 25978168
Alignment:
Q  44 tgtcgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaac 142  Q
    |||||||||||||||||||||| | ||| ||||| ||||||| ||||||||||||||||| |||||  | ||| |||||||||||| ||||||||| ||     
T  25978317 tgtcgtacacttcgcctttgaatgtcaaatcactacctccttatgaacttttggaataccgcttgactacacaattgttactaaactggaaaaagtcaat 25978218  T
Q  143 gaacaagcaaatttatcaataataaacaagttcagattcaattacataac 192  Q
     |||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  25978217 aaacaagcaaattcatcaataataaacaagttcaaattcaattacgtaac 25978168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 21632550 - 21632400
Alignment:
Q  44 tgtcgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaac 142  Q
    ||||||||||||||||||||||   ||||||||| ||||||| ||||||| ||||||||| |||||  | ||| |||||||||||| | ||||||| ||     
T  21632550 tgtcgtacacttcgcctttgaatttcaagtcactgcctccttatgaacttctggaatacctcttgactacacaattgttactaaactgtaaaaagtcaat 21632451  T
Q  143 gaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     |||||||||||  |||||||||||||||||| |||||||||||| |||||    
T  21632450 aaacaagcaaatccatcaataataaacaagtttagattcaattacctaaca 21632400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 32111249 - 32111124
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcactcctccttttgaac-ttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaa 145  Q
    |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||||||||| ||||||||| ||  ||    
T  32111249 cgtacacttcgcctttgaaatacaagtcactcctccttatgaactttttggaatatcacttgaacaagcaattgttactaaactggaaaaagtcaagaaa 32111150  T
Q  146 caagcaaatttatcaataataaacaag 172  Q
    |||| ||||| || ||| |||||||||    
T  32111149 caagaaaattcattaat-ataaacaag 32111124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 28109605 - 28109749
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||| ||||||||| |  |||||||||||||||||||  ||||||||| |||||||||||||||| || ||||||||||||| |  ||||||||||||||    
T  28109605 ctacatatctttaacttccgtacacttcgcctttgaatcacaagtcacacctccttttgaactttaggtataccacttgaaccagaatttgttactaaac 28109704  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagt 173  Q
     | ||||  | ||| |||||  ||||| |||||||||||||||||    
T  28109705 tgtaaaagatcaactaacaaaaaaattcatcaataataaacaagt 28109749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 12979169 - 12979214
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  12979169 cttcaaccactgttagggtggcaaaaatgatagaaagaatatatca 12979214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 14793448 - 14793403
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  14793448 cttcaaccactgttagggtggcaaaaatgatagaaagaatatatca 14793403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 12982184 - 12982244
Alignment:
Q  33 ctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttt 93  Q
    |||||||||| |||||||||||| | |||||||  ||||||||||||||||||||||||||    
T  12982184 ctatctttaactgtcgtacactttgtctttgaagcacaagtcactcctccttttgaacttt 12982244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 12744653 - 12744608
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  12744653 cttcaaccactgttagggtggaaaaaatgatagaaagaatatatca 12744608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 18140235 - 18140280
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||    
T  18140235 cttcaaccactgttagggtggcaaaaattatagaaagaatatatca 18140280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 23841749 - 23841794
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||    
T  23841749 cttcaaccactgttagggtggcaaaaatgatagaaataatatatca 23841794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 13020273 - 13020316
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatat 244  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  13020273 cttcaaccactattagggtggcaaaaatgatagaaagaatatat 13020316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 22958859 - 22958814
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||    
T  22958859 cttcaaccacagttagggtggcaaaaatgaaagaaagaatatatca 22958814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 23829533 - 23829578
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||    
T  23829533 cttcaaccacagttagggtggcaaaaatgaaagaaagaatatatca 23829578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 23381142 - 23381187
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||| |||||||||||||||||||| |||||| |||||| ||||||    
T  23381142 cttcgaccactgttagggtggcaaatatgatataaagaagatatca 23381187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 31429430 - 31429594
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31429430 ctacctatctttcactgccgtacacttcgcctttgaaacacaagtcactcctccttttgaacttttggaataccacttgagcaaacatttgttactaaac 31429529  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  31429530 tggaaaaagtcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataaca 31429594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 9187332 - 9187491
Alignment:
Q  34 tatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaa 133  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  9187332 tatctttaactgtcgtacatttcgcctttgaaacacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaattggaa 9187431  T
Q  134 aaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    ||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  9187432 aaagtcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataaca 9187491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 16789419 - 16789583
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16789419 ctacctatctttcactgccgtacactgcgcctttgaaacacaagtcactcctccttttgaacttttggaataccacttgagcaaacatttgttactaaac 16789518  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     | ||||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  16789519 tgaaaaaagtcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataaca 16789583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 24236538 - 24236394
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  24236538 ctacctatctttcactgtcgtacacttcgcctttgaaacacaagtcactcctccttttgaacttttggactagcacttgaacaaacatttgttactaaac 24236439  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagt 173  Q
     ||||||||| ||| |||||||||||| |||||||||||||||||    
T  24236438 tggaaaaagtcaacaaacaagcaaattcatcaataataaacaagt 24236394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 25872209 - 25872065
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25872209 ctacctatctttcactgccgtacacttcgcctttgaaacacaagtcactcctccttttgaacttttggactaccacttgaacaaacatttgttactaaac 25872110  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagt 173  Q
      |||||||| ||| |||||||||||| |||||||||||||||||    
T  25872109 tagaaaaagtcaacaaacaagcaaattcatcaataataaacaagt 25872065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 13973814 - 13973977
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||||| ||||||||  ||||||||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||    
T  13973814 ctacctatctttcactgccgtacacttcacctttgaatcacaagtcactccttcttttgaacttttggaattccacttgaacacatatttgttactaaac 13973913  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataac 192  Q
    |||||||||| ||| || ||||||||| ||||||||| |||||||||||||||||| |||||||    
T  13973914 aggaaaaagtcaacaaataagcaaattcatcaataatgaacaagttcagattcaatcacataac 13973977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 25958396 - 25958522
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaac 146  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||| |||    
T  25958396 cgtacacttcgcctttgaaacacaagtcactcctccttttgaacttttggaataccacctgaacaaacattcgttactaaactggaaaaagtcaacaaac 25958495  T
Q  147 aagcaaatttatcaataataaacaagt 173  Q
    ||||||||| |||||||||||||||||    
T  25958496 aagcaaattcatcaataataaacaagt 25958522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 1505314 - 1505460
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    ||||||||| |||| ||  |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  1505314 ctacctatccttaactgcagtacacttcgcctttgaaatcacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttactaaa 1505413  T
Q  128 caggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagt 173  Q
    | ||||||||| ||   |||||| ||||| |||||||||||||||||    
T  1505414 ctggaaaaagtcaataaaacaagaaaattcatcaataataaacaagt 1505460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 45455306 - 45455145
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || ||||||||| || ||||||  |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  45455306 ctacctatctttcactgccgtacactttgcatttgaatcacaagtcactcctccttttgaacttttgaaataccacttgaacaaatatttgttactaaac 45455207  T
Q  129 aggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagttcagattcaattacat 189  Q
     ||||||||| ||   |||||| ||||| ||||||||||| ||||| ||  |||||||||||    
T  45455206 tggaaaaagtcaataaaacaagaaaattcatcaataataagcaagtgcaagttcaattacat 45455145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 1505624 - 1505666
Alignment:
Q  204 caaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  1505624 caaccactgttagggtggcaaatatgatagaaagaatatatca 1505666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 16789728 - 16789770
Alignment:
Q  204 caaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  16789728 caaccactgttagggtggcaaatatgatagaaagaatatatca 16789770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 25871901 - 25871859
Alignment:
Q  204 caaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  25871901 caaccactgttagggtggcaaatatgatagaaagaatatatca 25871859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 31429739 - 31429781
Alignment:
Q  204 caaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  31429739 caaccactgttagggtggcaaatatgatagaaagaatatatca 31429781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 9187630 - 9187675
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||| |||||||||| || ||||||||||    
T  9187630 cttcaaccactgttagggtggaaaaaatgatagaatgaatatatca 9187675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 25958683 - 25958728
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||| |||||||||||||||||||| |||||| |||||||||||||    
T  25958683 cttcgaccactgttagggtggcaaatatgatagaaagaatatatca 25958728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 45454992 - 45454947
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||    
T  45454992 cttcaacaactgttagggtggcaaatatgatagaaagaatatatca 45454947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 19862175 - 19862340
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||||| || |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||     
T  19862175 ctacctatctttaactgccgtacacttcgcctttgaaacacaagtcactcccccttttgaacttttggaataccactttaacaaacatttgttactaaat 19862274  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataacaa 194  Q
     ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  19862275 tggaaaaagtcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataacaa 19862340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 19825782 - 19825617
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    |||||||||||||| || ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  19825782 ctacctatctttaactgccgtacacttcgcctttgaaatcacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttactaaa 19825683  T
Q  128 caggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    | ||||||| | ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  19825682 ctggaaaaaatcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataaca 19825617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 5672023 - 5671859
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5672023 ctacctatctttcactgccgtacacttcgcctttgaatcacaagtcactcatccttttgaacttttggaataccacttgaacaaacatttgttattaaac 5671924  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     ||||||| | ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  5671923 tggaaaaaatcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataaca 5671859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 27678969 - 27679133
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || | ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  27678969 ctacctatctttcactgccatacacttcgccttcgaatcacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttactaaac 27679068  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  27679069 tggaaaaagtcaactaacaagcaaattcatcaataataaacaagttcagattcaatcacataaca 27679133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 56196992 - 56196846
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    |||||||||||| | || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56196992 ctacctatctttcactgccgtacacttcgcctttgaaatcacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 56196893  T
Q  128 caggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagt 173  Q
    | ||||||||| ||   |||||| || || |||||||||||||||||    
T  56196892 ctggaaaaagtcaataaaacaagaaagttcatcaataataaacaagt 56196846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 49638479 - 49638640
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| |||| ||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  49638479 ctacctatctttcattgccgtgcacttcgcctttgaatcacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttactaaac 49638578  T
Q  129 aggaaaaagttaacga-acaagcaaatttatcaataataaacaagttcagattcaattacat 189  Q
     ||||||||| ||  | ||||| ||||| ||| ||||||||||||| ||  |||||||||||    
T  49638579 tggaaaaagtcaataacacaagaaaattcatcgataataaacaagtgcaagttcaattacat 49638640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 39499893 - 39499773
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  39499893 ctacctatctttcactgccgtacacttcgcctttgaaacacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttactaaac 39499794  T
Q  129 aggaaaaagttaacgaacaag 149  Q
     ||||||||| ||| ||||||    
T  39499793 tggaaaaagtcaacaaacaag 39499773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 15403781 - 15403914
Alignment:
Q  57 gcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaa-cgaacaagcaaatt 155  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| ||   |||||| |||||    
T  15403781 gcctttgaatcacaagtcactcctccttttgaacttttggaataccacttgaacaaatatttggtactaaactggaaaaagtcaataaaacaagaaaatt 15403880  T
Q  156 tatcaataataaacaagttcagattcaattacat 189  Q
     ||||||||||||||||| ||  |||||||||||    
T  15403881 catcaataataaacaagtgcaagttcaattacat 15403914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 3799805 - 3799887
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaaca 111  Q
    ||||||||||||||||| ||||||||||| |||||||  | ||||||||||||||||||||||||||||||||||||||||||    
T  3799805 ctacctatctttaattgccgtacacttcgtctttgaatcataagtcactcctccttttgaacttttggaataccacttgaaca 3799887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 26061883 - 26061928
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  26061883 cttcaaccactgttagggtggcaaaaatgatagaaagaatatatca 26061928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 56196677 - 56196632
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| || ||||||||||    
T  56196677 cttcaaccactgttagggtggcaaaaatgatagaaggaatatatca 56196632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 22091817 - 22091868
Alignment:
Q  77 tcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||| ||||||||||| ||||||||||| |||||| ||||||||||||    
T  22091817 tcctccttatgaacttttgggataccacttgatcaaacaattgttactaaac 22091868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 649668 - 649709
Alignment:
Q  205 aaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||| ||| |||||||||    
T  649668 aaccactgttagggtggcaaaaatgatagaaaaaatatatca 649709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 5671720 - 5671675
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| || |||| |||||    
T  5671720 cttcaaccactgttagggtggcaaaaatgatagaaggaatttatca 5671675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 19825468 - 19825423
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||| |||||||||| || ||||||||||    
T  19825468 cttcaaccactgttagggtggaaaaaatgatagaaggaatatatca 19825423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 49638793 - 49638838
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||| |||||||||||||||| || ||||||||||    
T  49638793 cttcaaccactgttaaggtggcaaaaatgatagaaggaatatatca 49638838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 15404068 - 15404112
Alignment:
Q  202 ttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||    
T  15404068 ttcaactactgttagggtggcaaatatgatagaaagaatatatca 15404112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 27679280 - 27679325
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||| ||||||||||| ||| |||||| |||||||||||||    
T  27679280 cttcaaccaatgttagggtggtaaatatgatagaaagaatatatca 27679325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 2777030 - 2776866
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2777030 ctacctatctttcactgccgtacacttcgcctttgaatcacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 2776931  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     ||||||| | ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  2776930 tggaaaaaatcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataaca 2776866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 55033639 - 55033804
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    |||||||||||||| ||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  55033639 ctacctatctttaactgtcgtacacttcacctttgaaatcacaagtcactcctccttttgaacttttggaataccacttgaacacgtatttgttactaaa 55033738  T
Q  128 caggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    | ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  55033739 ctggaaaaagtcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataaca 55033804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 24127035 - 24126871
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  24127035 ctacctatctttcactgccgtacacttcgcctttgaaacacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttactaaac 24126936  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     ||||||||| ||| |||||||||||| ||||||||||||||||| || ||||||| ||||||||    
T  24126935 tggaaaaagtcaacaaacaagcaaattcatcaataataaacaagtgcaaattcaatcacataaca 24126871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 47052974 - 47052807
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    |||||||| ||||| ||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||    
T  47052974 ctacctatatttaactgttgtacacttcgcctttgaaatcacaagtcactcctccttttgaacttttggaataccacttgagcacatatttgttactaaa 47052875  T
Q  128 caggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataacaag 195  Q
    | ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  47052874 ctggaaaaagtcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataacaag 47052807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 28328895 - 28328751
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28328895 ctacctatctttcactgtcgtacacttcgcctttgaaacacaagtcgctcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 28328796  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagt 173  Q
     ||||||||| ||| |||||| ||||| |||||||||||||||||    
T  28328795 tggaaaaagtcaacaaacaagaaaattcatcaataataaacaagt 28328751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 13556650 - 13556506
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  13556650 ctacctatctttcactgccgtacacttcgcctttgaaacacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttactaaac 13556551  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagt 173  Q
     ||||||||| ||| |||||||||||| |||||||||||||||||    
T  13556550 tggaaaaagtcaacaaacaagcaaattcatcaataataaacaagt 13556506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 7831810 - 7831660
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttgga--ataccacttgaacaaacatttgttactaa 126  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  7831810 ctacctatctttaactgtcgtacacttcgcctttgaaacacaagtcactcctccttttgaacttttggaatataccacttgaacaaatatttgttactaa 7831711  T
Q  127 acaggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagttca 176  Q
    || ||||||||| ||   |||||||||||| ||||||||||||||||||||    
T  7831710 actggaaaaagtcaagtaaacaagcaaattcatcaataataaacaagttca 7831660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 15197108 - 15197255
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  15197108 ctacctatctttaaatgtcgtacacttcgcctttgaaatcacaagtcactcctccgtttgaacttttggaataccacttgaacaaatatttgttactaaa 15197207  T
Q  128 caggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagtt 174  Q
    | ||||||||| ||   |||||||||||| ||||||||||||||||||    
T  15197208 ctggaaaaagtcaagtaaacaagcaaattcatcaataataaacaagtt 15197255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 9156510 - 9156362
Alignment:
Q  44 tgtcgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaac 142  Q
    |||||||| |||||||||||||| |||||||||  ||||||| || ||||||||||||||||||||||||||| |||||||||||| ||||||||| |||    
T  9156510 tgtcgtacgcttcgcctttgaaatacaagtcacgacctccttatgtacttttggaataccacttgaacaaacaattgttactaaactggaaaaagtcaac 9156411  T
Q  143 gaacaagcaaatttatcaataataaacaagttcagattcaattacataa 191  Q
     ||||| ||||||  ||||||||||| ||||||||||||||||||||||    
T  9156410 taacaaacaaattcgtcaataataaagaagttcagattcaattacataa 9156362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 10883025 - 10882864
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | ||||||||| ||||||||| ||  |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  10883025 ctacctatctttcactgtcgtacagttcgcctttcaatcacaagtcactcctcattttgaaattttggaataccacttgaacaaacatttgttactaaac 10882926  T
Q  129 aggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagttcagattcaattacat 189  Q
     ||||||||| ||   |||||| ||||| ||||||||||||||||| ||  |||||||||||    
T  10882925 tggaaaaagtcaataaaacaagaaaattcatcaataataaacaagtgcaagttcaattacat 10882864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 19303384 - 19303503
Alignment:
Q  70 aagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaacaagcaaatttatcaataataaac 169  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| || |||||| || ||  |||||||||||| |||||||||||||    
T  19303384 aagtcactcctccttatgaacttttggaataccatttgaacaaatatttgttactagactggaaaaggtcaataaacaagcaaattcatcaataataaac 19303483  T
Q  170 aagttcagattcaattacat 189  Q
    |||||||  |||||||||||    
T  19303484 aagttcaagttcaattacat 19303503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 36534691 - 36534799
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttg-aacaaacatttgttactaaa 127  Q
    |||||||||||| | || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || ||| |||||||||||||    
T  36534691 ctacctatctttcactgccgtacacttcgcctttgaaacacaagtcactcctcctttagaacttttggaataccacttgaaaaaaatatttgttactaaa 36534790  T
Q  128 caggaaaaa 136  Q
    | |||||||    
T  36534791 ctggaaaaa 36534799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 22025783 - 22025657
Alignment:
Q  52 acttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagt-taacgaacaagc 150  Q
    |||||||| |||||  |||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||| |||||| ||  ||  |||||||    
T  22025783 acttcgcccttgaatcacaagtcactcctcctttagaacttttggaataccacttgaacaactatttgttactaaactggaaaatgtcaaataaacaagc 22025684  T
Q  151 aaatttatcaataataaacaagttcag 177  Q
    ||||| || ||||||||||||||||||    
T  22025683 aaattcattaataataaacaagttcag 22025657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 10961459 - 10961395
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttt 93  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||| ||||||    
T  10961459 ctacctatctttaattgccgtacatttcgcctttgaaacacaagtcactcccccttttaaacttt 10961395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 10964968 - 10964904
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttt 93  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||| ||||||    
T  10964968 ctacctatctttaattgccgtacatttcgcctttgaaacacaagtcactcccccttttaaacttt 10964904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 10964558 - 10964513
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  10964558 cttcaaccactgttagggtggcaaaaatgatagaaagaatatatca 10964513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 22995576 - 22995668
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagt 138  Q
    ||||||||| |||||||||   ||||||||| ||||||| ||||||||||||||| ||||| | || ||| |||||||||||| |||||||||    
T  22995576 cgtacactttgcctttgaatttcaagtcacttcctccttatgaacttttggaatatcacttaatcacacaattgttactaaactggaaaaagt 22995668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 2776723 - 2776678
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  2776723 cttcaaccactgttagggtggcaaatatgatagaaagaatatatca 2776678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 9155960 - 9155915
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| || ||||||||||    
T  9155960 cttcaaccactgttagggtggcaaaaatgatagaaggaatatatca 9155915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 10961051 - 10961006
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  10961051 cttcaaccactgttagggtggaaaaaatgatagaaagaatatatca 10961006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 19303656 - 19303701
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  19303656 cttcaaccactgttagggtggtaaaaatgatagaaagaatatatca 19303701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 24126729 - 24126684
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  24126729 cttcaaccactgttagggtggcaaatatgatagaaagaatatatca 24126684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 28328590 - 28328545
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  28328590 cttcaaccactgttagggtggcaaatatgatagaaagaatatatca 28328545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 10882711 - 10882666
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  10882711 cttcaaccactattagggtggcaaaaatgatagaaggaatatatca 10882666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 55033954 - 55033998
Alignment:
Q  202 ttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||| ||||||||||||| |||||| |||||||||||||    
T  55033954 ttcaaccactattagggtggcaaatatgatagaaagaatatatca 55033998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 13556346 - 13556301
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||| |||||||||||||||||||| |||||| |||||| ||||||    
T  13556346 cttcgaccactgttagggtggcaaatatgatataaagaagatatca 13556301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 11044 - 11208
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11044 ctacctatctttaactgccgtacacttcgcctttgaaacacaagtcgctcctccttttgaacttttggaataccacttaaacaaacatttgttactaaac 11143  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     ||||||||| ||| |||||| | ||| |||||||||||||||||||||||||||| ||||||||    
T  11144 tggaaaaagtcaacaaacaagtagattcatcaataataaacaagttcagattcaatcacataaca 11208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 11356 - 11398
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatata 243  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  11356 cttcaaccactgttagggtggcaaaaatgatagaaggaatata 11398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 20594890 - 20594724
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20594890 ctacctatctttcactgccgtacacttcgcctttgaattacaattcactcctccttttgaacttttggaataccacttgaacaaacaattgttactaaac 20594791  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataacaag 195  Q
     ||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||| ||||||||||    
T  20594790 tggaaaaagtcaacaaacaagtaaattcatcaataataaacaagttcagattcaatcacataacaag 20594724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 45289144 - 45289308
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||     
T  45289144 ctacctatctttcactgccgtacacttcgcctttgaatcacaagtcactcctccttttgaacttttggaataccacttgaacacgtatttgttactaaat 45289243  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     ||||||| | ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  45289244 tggaaaaaatcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataaca 45289308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 22231291 - 22231438
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || | |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22231291 ctacctatctttcactgccatacacttcgcctttaaaacacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 22231390  T
Q  129 ---aggaaaaagttaacgaacaagcaaatttatcaataataaacaagt 173  Q
       |  ||||| | ||| |||||||||||| |||||||||||||||||    
T  22231391 tgaaaaaaaaaatcaacaaacaagcaaattcatcaataataaacaagt 22231438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 22255448 - 22255301
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || | |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22255448 ctacctatctttcactgccatacacttcgcctttaaaacacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 22255349  T
Q  129 ---aggaaaaagttaacgaacaagcaaatttatcaataataaacaagt 173  Q
       |  ||||| | ||| |||||||||||| |||||||||||||||||    
T  22255348 tgaaaaaaaaaatcaacaaacaagcaaattcatcaataataaacaagt 22255301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 26137755 - 26137904
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    ||||||||||||   || ||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  26137755 ctacctatctttcgctgccgtacacttcgcccttgaatcacaagtcactcctccttttgaacttttggaataccacttgaacaactatttgttactaaac 26137854  T
Q  129 aggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagttcag 177  Q
     |||||| || ||   |||||||||||| || ||||||||||||||||||    
T  26137855 tggaaaatgtcaagtaaacaagcaaattcattaataataaacaagttcag 26137904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 4543934 - 4543836
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    ||||||||||||   || |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4543934 ctacctatctttctctgccgtacacttcgcctttgaaacacaagtcacttctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 4543836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 9275025 - 9275155
Alignment:
Q  44 tgtcgtacacttcgcctttgaaaga-caagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaac 142  Q
    ||||||||||||| | ||| ||| | |||||||||||||||| |||||||| ||||||||||||||||||| ||||||| ||| || | |||| || ||     
T  9275025 tgtcgtacacttcactttttaaacatcaagtcactcctccttgtgaactttcggaataccacttgaacaaatatttgtttctagactgaaaaaggtcaat 9275124  T
Q  143 gaacaagcaaatttatcaataataaacaagt 173  Q
     |||||| ||||| |||||||||||||||||    
T  9275125 aaacaagaaaattcatcaataataaacaagt 9275155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 17865548 - 17865593
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  17865548 cttcaaccactgttagggtggcaaaaatgatagaaagaatatatca 17865593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 45289447 - 45289492
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  45289447 cttcaaccactgttagggtggcaaaaatgataaaaggaatatatca 45289492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 9275324 - 9275369
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  9275324 cttcaaccactgttagggtggaaaaaatgatagaaagaatatatca 9275369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 20594586 - 20594545
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatat 242  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  20594586 cttcaaccactgttagggtggcaaaaatgatagaaagaatat 20594545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 22231599 - 22231644
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||||||| | |||| |||||||||||||    
T  22231599 cttcaaccactgttagggtggcaaatacgatagaaagaatatatca 22231644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 22255140 - 22255095
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||||||| | |||| |||||||||||||    
T  22255140 cttcaaccactgttagggtggcaaatacgatagaaagaatatatca 22255095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 26461598 - 26461553
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||| |||||||||||||||| || ||||||||||    
T  26461598 cttcaaccactgttaaggtggcaaaaatgatagaaggaatatatca 26461553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 12756 - 12593
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    |||||||| ||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  12756 ctacctatttttaactgtcgtacacttcgcctttgaaatcacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttactaaa 12657  T
Q  128 caggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataa 191  Q
    | ||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  12656 ctggaaaaagtcaacaaacaagcaaattcatcaataatagacaagttcagattcaatcacataa 12593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 12441 - 12397
Alignment:
Q  202 ttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||    
T  12441 ttcaaccactgtcagggtggcaaatatgatagaaagaatatatca 12397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 191
Target Start/End: Original strand, 22939073 - 22939236
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    |||||||||||||| || ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||    
T  22939073 ctacctatctttaactgccgtacacttcgcctttgaaatcacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttaataaa 22939172  T
Q  128 caggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataa 191  Q
    | ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  22939173 ctggaaaaagtcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataa 22939236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 19687751 - 19687601
Alignment:
Q  44 tgtcgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaac 142  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||||||| |||    
T  19687751 tgtcgtacacttcgcctttgaaatacaagtcactacctccttatgaacttttggaataccacttgaacaagcaattgttactaaactggaaaaagtcaac 19687652  T
Q  143 gaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     ||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  19687651 taacaaacaaattcatcaataataaacaagttcagattcaattacataaca 19687601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 30762989 - 30762844
Alignment:
Q  49 tacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaaca 147  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||||||| ||| ||||    
T  30762989 tacacttcgcctttgaaatacaagtcactacctccttatgaacttttggaataccacttgaacaagcaattgttactaaactggaaaaagtcaactaaca 30762890  T
Q  148 agcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    | ||||||  ||||||||||||||||||||||||||||||||||||    
T  30762889 aacaaattcgtcaataataaacaagttcagattcaattacataaca 30762844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 2454994 - 2454847
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaa 145  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||| | ||||||| ||| ||    
T  2454994 cgtacacttcgcctttgaaatacaagtcactacctccttatgaacttttggaataccacttgaacaagcaattgttactaaactgaaaaaagtcaactaa 2454895  T
Q  146 caagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    ||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  2454894 caaacaaattcgtcaataataaacaagttcagattcaattacataaca 2454847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 26549804 - 26549656
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacag-gaaaaagttaacga 144  Q
    |||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |  ||||||| ||| |    
T  26549804 cgtacacttcgcctttgaaatacaagtcactacctccttatgaacttttggaataccacttgaacaaacaattgttactaaactgaaaaaaagtcaacta 26549705  T
Q  145 acaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    |||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  26549704 acaaacaaattcgtcaataataaacaagttcagattcaattacataaca 26549656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 21334364 - 21334532
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || | |||||||||| || |||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21334364 ctacctatctttcactgccatacacttcgcattagaatcacaagtcactcctccttttgaacttttggaatacctcttgaacaaacatttgttactaaac 21334463  T
Q  129 aggaaaaagttaacgaa----caagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     ||||||| | ||| ||    |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  21334464 tggaaaaaatcaacaaacaagcaagcaaattcatcaataataaacaagttcagattcaatcacataaca 21334532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 28564328 - 28564476
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacag-gaaaaagttaacga 144  Q
    |||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |  ||||| | ||| |    
T  28564328 cgtacacttcgcctttgaaatacaagtcactacctccttatgaacttttggaataccacttgaacaaacaattgttactaaactgaaaaaaaatcaacta 28564427  T
Q  145 acaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    |||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  28564428 acaaacaaattcgtcaataataaacaagttcagattcaattacataaca 28564476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 34134888 - 34135037
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    ||||||||||||   || ||||||||| |||||  ||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  34134888 ctacctatctttcgctgccgtacactttgccttcaaatcacaagtcactcctccttttgaacttttggaataccacttgaacaactatttgttactaaac 34134987  T
Q  129 aggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagttcag 177  Q
     |||||| || ||   |||||||||||| || ||||||||||||||||||    
T  34134988 tggaaaatgtcaagtaaacaagcaaattcattaataataaacaagttcag 34135037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 22939391 - 22939436
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  22939391 cttcaaccactattagggtggcaaaaatgataaaaagaatatatca 22939436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 34407593 - 34407548
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  34407593 cttcaaccactgttagggtggcaaaaatgatagaaagaatatatca 34407548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 35382538 - 35382686
Alignment:
Q  48 gtacacttcgcctttgaaagacaagtcactcc-tccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaag--ttaacga 144  Q
    |||||||| |||||||||   ||||| ||||| ||||| |||||||||||||||||||||||  | | | |||||||||| | | |||||   | ||  |    
T  35382538 gtacactttgcctttgaatttcaagttactccctccttatgaacttttggaataccacttgactacaaaattgttactaagctgaaaaaataatcaataa 35382637  T
Q  145 acaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    ||||||||||  |||||||||||||||||| |||||||||||| |||||    
T  35382638 acaagcaaatccatcaataataaacaagtttagattcaattacctaaca 35382686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 19687321 - 19687276
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| || ||||||||||    
T  19687321 cttcaaccactgttagggtggcaaaaatgatagaaggaatatatca 19687276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 30762562 - 30762517
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| || ||||||||||    
T  30762562 cttcaaccactgttagggtggcaaaaatgatagaaggaatatatca 30762517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 2838659 - 2838711
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctc 81  Q
    |||||||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  2838659 ctacctatctttaactgtcgtacacttcgcctttaaatcacaagtcactcctc 2838711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 21334674 - 21334719
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||| ||| |||||| |||||||||||||    
T  21334674 cttcaaccactgttagggtggtaaatatgatagaaagaatatatca 21334719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 26549227 - 26549182
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||    
T  26549227 cttcagccactgttagggtggcaaaaatgatagaaggaatatatca 26549182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 28564913 - 28564958
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||    
T  28564913 cttcagccactgttagggtggcaaaaatgatagaaggaatatatca 28564958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 33879255 - 33879419
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || | ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  33879255 ctacctatctttcactgccatacacttcgccttagaatcacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttactaaac 33879354  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  33879355 tggaaaaagtcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataaca 33879419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 59 - 190
Target Start/End: Original strand, 23945837 - 23945968
Alignment:
Q  59 ctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaacaagcaaatttat 158  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||    
T  23945837 ctttgaaacacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaactggaaaaagtcaacaaacaagcaaattcat 23945936  T
Q  159 caataataaacaagttcagattcaattacata 190  Q
    |||||||||||||||||| ||||||| |||||    
T  23945937 caataataaacaagttcatattcaatcacata 23945968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 23645289 - 23645124
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    |||||||||||||| || | ||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||    
T  23645289 ctacctatctttaactgccatacacttcgcctttgaaatcacaagtcactcctccttttaaacttttggaataccacttgaacacatatttgttactaaa 23645190  T
Q  128 caggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    |  |||||||| ||| |||||| ||||| |||||||||||||||||||| ||||||| ||||||||    
T  23645189 ctagaaaaagtcaacaaacaagaaaattcatcaataataaacaagttcatattcaatcacataaca 23645124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 12584465 - 12584306
Alignment:
Q  32 cctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacagg 131  Q
    ||||||||||| || ||||||||||  |||| ||  |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||    
T  12584465 cctatctttaactgccgtacacttcatctttaaatcacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttactaaactgg 12584366  T
Q  132 aaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataac 192  Q
     |||||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  12584365 -aaaagtcaacaaacaagcaaattcatcaataataaacaagttcagattcaatcacataac 12584306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 25593559 - 25593704
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    |||||||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||    
T  25593559 ctacctatctttaactgtcgtacacttcgcctttaaaatcacaagtcactcctccttttgaacttttggaataccacttgaaaacatatttgttactaaa 25593658  T
Q  128 caggaaaaagttaacgaacaagcaaatttatcaataataaacaagt 173  Q
    |  |||||||| ||| |||||||||||| |||||| ||||||||||    
T  25593659 ctagaaaaagtcaacaaacaagcaaattcatcaatgataaacaagt 25593704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 38250349 - 38250493
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||| ||||| || |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38250349 ctacctatttttaactgccgtacacttcgcctttgaatcacaagtcactcttccttttgaacttttggaataccacttgaacaaacgtttgttactaaac 38250448  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagt 173  Q
     | ||||||| ||  |||||||||||| ||||| |||||||||||    
T  38250449 tgaaaaaagtcaataaacaagcaaattcatcaaaaataaacaagt 38250493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 31983110 - 31982963
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaa 145  Q
    |||||||||||||||||||| | |||||||| ||||| | ||||||||||||||| |||||||||||  | |||||||||||| | ||||||| ||| ||    
T  31983110 cgtacacttcgcctttgaaatataagtcactacctccatatgaacttttggaatatcacttgaacaagtacttgttactaaactgaaaaaagtcaactaa 31983011  T
Q  146 caagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    ||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  31983010 caaacaaattcgtcaataataaacaagttcagattcaattacataaca 31982963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 176
Target Start/End: Complemental strand, 17929259 - 17929130
Alignment:
Q  48 gtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaa-cgaac 146  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||  ||||||||| ||   |||    
T  17929259 gtacacttcgcctttgaaacaaaagtcactcctccttttgaacttttgaaataccacttgaacaaatattttttactaaaatggaaaaagtcaagtaaac 17929160  T
Q  147 aagcaaatttatcaataataaacaagttca 176  Q
    ||||||||| || |||||||||||||||||    
T  17929159 aagcaaattcataaataataaacaagttca 17929130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 184
Target Start/End: Original strand, 39658711 - 39658845
Alignment:
Q  50 acacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaacaag 149  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||  | ||||  | ||| |||||     
T  39658711 acacttcgcctttgaatcacaagtcactcctccttatgaacttttggaataccacttgaataagcatttgttactaaattgtaaaagatcaactaacaaa 39658810  T
Q  150 caaatttatcaataataaacaagttcagattcaat 184  Q
     ||||| ||||||||||||||||| || |||||||    
T  39658811 aaaattcatcaataataaacaagtgcaaattcaat 39658845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 22224337 - 22224462
Alignment:
Q  69 caagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaacaagcaaatttatcaataataa 167  Q
    ||||||||| ||||||| |||||||||||||||| ||||||  | ||| |||||||||||| ||||||||| ||  |||||| ||||| |||||||||||    
T  22224337 caagtcactacctccttatgaacttttggaatactacttgactacacaattgttactaaactggaaaaagtcaataaacaagaaaattcatcaataataa 22224436  T
Q  168 acaagttcagattcaattacataaca 193  Q
    ||||||||||| ||||||||||||||    
T  22224437 acaagttcagactcaattacataaca 22224462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 22230679 - 22230804
Alignment:
Q  69 caagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaacaagcaaatttatcaataataa 167  Q
    ||||||||| ||||||| |||||||||||||||| ||||||  | ||| |||||||||||| ||||||||| ||  |||||| ||||| |||||||||||    
T  22230679 caagtcactacctccttatgaacttttggaatactacttgactacacaattgttactaaactggaaaaagtcaataaacaagaaaattcatcaataataa 22230778  T
Q  168 acaagttcagattcaattacataaca 193  Q
    ||||||||||| ||||||||||||||    
T  22230779 acaagttcagactcaattacataaca 22230804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 23644975 - 23644929
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatcaa 247  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  23644975 cttcaaccactgttagggtggcaaaaatgatagaaagaatatatcaa 23644929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 12584155 - 12584113
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatata 243  Q
    ||||||||||||||||||| |||||||||||| ||||||||||    
T  12584155 cttcaaccactgttagggttgcaaaaatgatagaaagaatata 12584113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 25593869 - 25593911
Alignment:
Q  204 caaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  25593869 caaccactgttagggtggcaaatatgatagaaagaatatatca 25593911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 33879568 - 33879613
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  33879568 cttcaaccaatgttagggtggcaaatatgatagaaagaatatatca 33879613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 23946112 - 23946153
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatat 242  Q
    ||||||||| |||||||||||||||||||||| ||| |||||    
T  23946112 cttcaaccattgttagggtggcaaaaatgatagaaataatat 23946153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 31982536 - 31982491
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||| |||||||||||||||| ||  |||||||||    
T  31982536 cttcaaccactgttaaggtggcaaaaatgatagaagaaatatatca 31982491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 21502 - 21345
Alignment:
Q  33 ctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacagg 131  Q
    |||||||||| || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  21502 ctatctttaactgccgtacacttcgcctttgaaattacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaactgt 21403  T
Q  132 aaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacat 189  Q
    |||| || ||| |||||||||||| ||||||||||||||||||||  |||||||||||    
T  21402 aaaaggtcaacaaacaagcaaattcatcaataataaacaagttcaagttcaattacat 21345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 21198 - 21157
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatat 242  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  21198 cttcaaccactgttagggtggcaaaaatgatagaaagaatat 21157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 2063 - 2207
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | || |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  2063 ctacctatctttcactgccgtacacttcgcctttgaatcacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttactaaac 2162  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagt 173  Q
     ||||||||| ||| |||||||||||| |||||||||||||||||    
T  2163 tggaaaaagtcaacaaacaagcaaattcatcaataataaacaagt 2207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 14000 - 13853
Alignment:
Q  32 cctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacag 130  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |    
T  14000 cctatctttaattgccgtacacttcgcctttgaaatcacaagtcactcctccttttgaacttttggaataccacttgaacaactatttgttactaaactg 13901  T
Q  131 gaaaaagttaa-cgaacaagcaaatttatcaataataaacaagttcag 177  Q
    |||||||| ||   |||||||||||| || ||||||||||||||||||    
T  13900 gaaaaagtcaagtaaacaagcaaattcattaataataaacaagttcag 13853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 27258 - 27109
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    ||||||||||||   || ||||||||| |||||  ||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  27258 ctacctatctttcgctgccgtacactttgccttcaaatcacaagtcactcctccttttgaacttttggaataccacttgaacaactatttgttactaaac 27159  T
Q  129 aggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagttcag 177  Q
     |||||| || ||   |||||||||||| || ||||||||||||||||||    
T  27158 tggaaaatgtcaagtaaacaagcaaattcattaataataaacaagttcag 27109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 4848 - 5013
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||||| |  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  4848 ctacctatctttaactaccgtacacttcgcctttgaaacacaagtcactcctccttttgaacttttgaaataccacttgaacacatatttgttactaaac 4947  T
Q  129 aggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     ||||||||| ||   |||||||||||| || |||||||||||||||||    |||||||||||||    
T  4948 tggaaaaagtcaagtaaacaagcaaattcattaataataaacaagttcaagaacaattacataaca 5013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 8724 - 8577
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaa 145  Q
    |||| ||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||||||| ||| ||    
T  8724 cgtaaacttcgcctttcaaatacaagtcactacctccttatgaacttttggaataccacttgaacaagcaattgttactaaactggaaaaagtcaactaa 8625  T
Q  146 caagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    ||| ||||||  | ||||||||||||||||||||||||||||||||||    
T  8624 caaacaaattcgttaataataaacaagttcagattcaattacataaca 8577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 8156 - 8111
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||| ||||| |||||||||||||||||||| || ||||||||||    
T  8156 cttcagccactattagggtggcaaaaatgatagaaggaatatatca 8111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 294469 - 294308
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | ||  ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  294469 ctacctatcttttactgctgtacacttcgcctttgaatcacaagtcactcctccttttgaacttttggaataccacttgaacacatatttgttactaaac 294370  T
Q  129 aggaaaaagttaacga-acaagcaaatttatcaataataaacaagttcagattcaattacat 189  Q
     ||||||||| ||  | ||||| ||||| ||||||||||||||||| ||  |||||||||||    
T  294369 tggaaaaagtcaataatacaagaaaattcatcaataataaacaagtgcaagttcaattacat 294308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 294155 - 294110
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||    
T  294155 cttcaaccactgttagggtggcaaatatgatagaaggaatatatca 294110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 49717836 - 49717673
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||||| || |||||||||||||||||||  ||||||||||||||||| |||||| ||||||||||||||||| || |||||||||||||||    
T  49717836 ctacctatctttaactgccgtacacttcgcctttgaatcacaagtcactcctccttatgaactcttggaataccacttgaagaagcatttgttactaaac 49717737  T
Q  129 aggaaaaagttaacgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     | ||||  | ||| ||||| |||||| ||||||||||||||||| || |||||| |||||||||    
T  49717736 tgtaaaagatcaactaacaaacaaattcatcaataataaacaagtgcaaattcaa-tacataaca 49717673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 21020360 - 21020525
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||| | ||||||||||||||||||||||  |||||||| || |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  21020360 ctacctatctttcactgtcgtacacttcgcctttgaatcacaagtcagtcttccttttgaacttttgaaataccacttgaacaaacatttgttaccaaac 21020459  T
Q  129 aggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
     | ||||| | ||   |||||| ||||| |||||||||||||||||  ||| ||||| ||||||||    
T  21020460 tgaaaaaaatcaataaaacaagaaaattcatcaataataaacaagtgtagaatcaatcacataaca 21020525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 22455250 - 22455314
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaagacaagtcactcctccttttgaacttt 93  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  22455250 ctacctatctttaattgtcgtacacttcgcctttgaagcacaagtcactcctccttttgaacttt 22455314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 49717533 - 49717488
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  49717533 cttcaaccactgttagggtggcaaaaatgatagaaagaatatatca 49717488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 47682844 - 47682802
Alignment:
Q  204 caaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||| |||| |||||| |||||||||||||    
T  47682844 caaccactgttagggtgacaaatatgatagaaagaatatatca 47682802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 4131 - 3984
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaa 145  Q
    |||||||||||||||||||| |||||||||| ||||||| |||  |||||||||||||||||||||| || |||||||||||| | ||||| | ||| ||    
T  4131 cgtacacttcgcctttgaaatacaagtcactacctccttatgattttttggaataccacttgaacaagcaattgttactaaactgaaaaaaatcaactaa 4032  T
Q  146 caagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    ||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  4031 caaacaaattcgtcaataataaacaagttcagattcaattacataaca 3984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 3606 - 3563
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatat 244  Q
    ||||||||||| |||||||||||||||||||| || ||||||||    
T  3606 cttcaaccacttttagggtggcaaaaatgatagaaggaatatat 3563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 27483 - 27337
Alignment:
Q  32 cctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacag 130  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||| |    
T  27483 cctatctttaattgccgtacacttcgcctttgaaatcacaagtcactcctccttttgaacttt-ggaataccacttgaacaactatttgttactaaactg 27385  T
Q  131 gaaaaagttaa-cgaacaagcaaatttatcaataataaacaagttcag 177  Q
    |||||||| ||   |||||||||||| || ||||||||||||||||||    
T  27384 gaaaaagtcaagtaaacaagcaaattcattaataataaacaagttcag 27337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 111921 - 112070
Alignment:
Q  29 ctacctatctttaattgtcgtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 127  Q
    |||||||||||||| || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111921 ctacctatctttaactgccgtacacttcgcctttgaaatcacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaa 112020  T
Q  128 caggaaaaagttaa-cgaacaagcaaatttatcaataataaacaagttca 176  Q
    | | ||| ||| ||   ||||||  |||| |||| |||||||||||||||    
T  112021 ctgaaaagagtcaataaaacaagataattcatcagtaataaacaagttca 112070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 225468 - 225321
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcact-cctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaa 145  Q
    |||||||||||||||||||| | |||||||| ||||| | ||||||||||||||| |||||||||||  | |||||||||||| | ||||||| ||| ||    
T  225468 cgtacacttcgcctttgaaatataagtcactacctccatatgaacttttggaatatcacttgaacaagtacttgttactaaactgaaaaaagtcaactaa 225369  T
Q  146 caagcaaatttatcaataataaacaagttcagattcaattacataaca 193  Q
    ||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  225368 caaacaaattcgtcaataataaacaagttcagattcaattacataaca 225321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 224894 - 224849
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||| |||||||||||||||| ||  |||||||||    
T  224894 cttcaaccactgttaaggtggcaaaaatgatagaagaaatatatca 224849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 27418 - 27276
Alignment:
Q  48 gtacacttcgcctttgaaag-acaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagttaacgaac 146  Q
    |||||||||| | ||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||    
T  27418 gtacacttcgtccttgaaatcacaagtcacttctccttttgaacttttggaataccacttgaacaaacatttgttactaaactggaaaaggtcaacaaac 27319  T
Q  147 aagcaaatttatcaataataaacaagttcagattcaattacat 189  Q
    ||| ||||| ||||||||||||||| | ||  |||||||||||    
T  27318 aagtaaattcatcaataataaacaactacaagttcaattacat 27276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 27123 - 27078
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||| ||||||||||||||| |||| |||||||||||||    
T  27123 cttcaaccactattagggtggcaaaaaggatagaaagaatatatca 27078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 97188 - 97269
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 128  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  97188 cgtacacttcgcctttgaatcacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaac 97269  T

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Target: scaffold0035 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 61240 - 61149
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttggaataccacttgaacaaacatttgttactaaacaggaaaaagt 138  Q
    |||||||||||||||||||  |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  61240 cgtacacttcgcctttgaataacaattcacccctccttttgaacttttggaataccacttgaacaaacatttgttactaaactggaaaaagt 61149  T

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Target: scaffold0126 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 1609 - 1748
Alignment:
Q  47 cgtacacttcgcctttgaaagacaagtcactcctccttttgaacttttg--gaataccactt-gaacaaacatttgttactaaacaggaaaaagttaacg 143  Q
    |||||||||||||||||||   |||||||||||||||| |||||||||   ||||||||||| || |||| |||||||||||||| | ||| ||| |||     
T  1609 cgtacacttcgcctttgaatt-caagtcactcctccttatgaacttttttcgaataccactttgatcaaaaatttgttactaaactgtaaatagtcaact 1707  T
Q  144 aacaagcaaatttatcaataataaacaagttcagattcaat 184  Q
    ||||| ||||||  | |||||||||||||| || |||||||    
T  1708 aacaaacaaattcgttaataataaacaagtgcatattcaat 1748  T

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Target: scaffold1755 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1755
Description:

Target: scaffold1755; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 1280 - 1235
Alignment:
Q  201 cttcaaccactgttagggtggcaaaaatgataaaaagaatatatca 246  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  1280 cttcaaccactgttagggtggaaaaaatgatagaaagaatatatca 1235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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