View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_62 (Length: 252)
Name: NF9040_low_62
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_62 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 34363033 - 34362803
Alignment:
| Q |
22 |
gttgtttagttacatatgtaatgttttataaaaccacaattttatttcaataaagatttgtaactctttctttccatctgattattatgtcacatttcga |
121 |
Q |
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| T |
34363033 |
gttgtttagttacatatgtaatgttttataaaaccacaattttatttcaataaagatttataattctttctttccatctgattattatgtcacatttcgc |
34362934 |
T |
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| Q |
122 |
tctcaacaatgcctaacaagattggtttgtccccaaattttgccaaaatcctaaattcatttttcgtttctgattcacaaacttattctcatctgcacaa |
221 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34362933 |
tctcaacaatgcctaacaagattggtttgtcctcaaattttgccaaaatcctaaattcatttttcgtttctgattcacaaacttattctcatctgcacaa |
34362834 |
T |
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| Q |
222 |
attacaatgacatcttcaaggtatacttatt |
252 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34362833 |
attacaatgacatcttcaaggtatacttatt |
34362803 |
T |
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