View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9040_low_63 (Length: 241)

Name: NF9040_low_63
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9040_low_63
NF9040_low_63
[»] chr7 (5 HSPs)
chr7 (1-241)||(7739508-7739748)
chr7 (1-241)||(7727190-7727430)
chr7 (1-241)||(7731350-7731590)
chr7 (1-228)||(7699328-7699555)
chr7 (1-195)||(7713673-7713867)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7739508 - 7739748
Alignment:
Q  1 actaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatgag 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  7739508 actaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgctgaaagagttaggaattggcccagttactttgggcatttcggccaatgag 7739607  T
Q  101 aggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccaggtaggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7739608 aggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggg 7739707  T
Q  201 gtttgccacacccgacgaagctccagtcgctacaacagtct 241  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  7739708 gtttaccacacccgacgaagctccagtcgctacaacagtct 7739748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7727190 - 7727430
Alignment:
Q  1 actaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatgag 100  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |||| || || || ||||||||||||||||| |||||||||    
T  7727190 actaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccggttactttgggcatttcagccaatgag 7727289  T
Q  101 aggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccaggtaggg 200  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7727290 aggaagttaagatatgggaggtcgccaaactctgctggaagcgtaccagaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggg 7727389  T
Q  201 gtttgccacacccgacgaagctccagtcgctacaacagtct 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7727390 gtttgccacacccgacgaagctccagtcgctacaacagtct 7727430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7731350 - 7731590
Alignment:
Q  1 actaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatgag 100  Q
    |||||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||| |||| || |||||||||||||| ||||||||||| ||||||    
T  7731350 actaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctaaaagagttagggattggcccagttactttcggcatttcggctaatgag 7731449  T
Q  101 aggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccaggtaggg 200  Q
    |||||||||||||| || ||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7731450 aggaagttaagataagggaggtcgccaaactctactggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggg 7731549  T
Q  201 gtttgccacacccgacgaagctccagtcgctacaacagtct 241  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  7731550 gtttaccacacccgacgaagctccagtcgctacaacagtct 7731590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7699328 - 7699555
Alignment:
Q  1 actaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatgag 100  Q
    |||||| ||||||||||||||||| ||  |||||||||||||||||||||| |||||| |||| || |||||||||||||| ||||||||||||||||||    
T  7699328 actaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctaaaagagttagggattggcccagttactttcggcatttcggccaatgag 7699427  T
Q  101 aggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccaggtaggg 200  Q
    || | | ||||||| || |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    |    
T  7699428 agcatgctaagataagggaggttgccaaactccgctggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgactcggccaggataag 7699527  T
Q  201 gtttgccacacccgacgaagctccagtc 228  Q
    || |||| || |||||||||||||||||    
T  7699528 gtctgccgcaaccgacgaagctccagtc 7699555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 7713673 - 7713867
Alignment:
Q  1 actaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatgag 100  Q
    |||||| |||||||| |||||||||||  ||| |||||||| |||||||||||||||| |||| || |||||||||||||| ||||||||||||||||||    
T  7713673 actaaggctgttggagccaaggtcgagattttctagtcttttgagtttgctgaaagagttagggattggcccagttactttcggcatttcggccaatgag 7713772  T
Q  101 aggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccagg 195  Q
    || | | ||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||  |||||| |||||||||    
T  7713773 agcatgctaagataagggaggtcgccaaactccgctggaagtgtaccggaaagaccccagccacggccgatggtgacgccggtgactcggccagg 7713867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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