View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_7 (Length: 850)
Name: NF9040_low_7
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 638; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 11 - 830
Target Start/End: Complemental strand, 43015884 - 43015055
Alignment:
| Q |
11 |
tttggtgttatttactttaagttaatttatctacttgatcgtttacggttgactatttgttaagttaggaag-tagttaattaattattttgttaagcac |
109 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
43015884 |
tttggtgttatttactttaagttaattcatctacttgatcgtttaccgttgactatttgttaagttaggaaggtaattaattaattattttgttaagcac |
43015785 |
T |
|
| Q |
110 |
catcttcaaaaaagaattatttgtcgagcatatataaattataatcaataatatataaaatgactcaaggactgtggcacgaaattcgctgnnnnnnnn- |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
43015784 |
catcttcaaaaaagaattatttgtcgagcatatataaatcataatcaataatgtataaaatgactcaaggattgtggcacgaaattcgctgttttttttt |
43015685 |
T |
|
| Q |
209 |
-------acatgtatacatttattaaattggtttgtcgatcagttgatgtcacttgcataagataatttggctctggaaacagcaaaatagtttatgtct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43015684 |
tttttttacatgtatacatttattaaattggtttgtcgatcagttgatgtcacctgcataagataatttggctctggaaacagcaaaatagtttatatct |
43015585 |
T |
|
| Q |
302 |
aaattttttatattttgatcacattaatccgttcttaattggctcaaagctatcaaagcttataggcgtgtgtcatgcagtccaagttttcattggtcat |
401 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015584 |
aaattttttatattttaatcacattaatccgttcttaattggctcaaaactatcaaagcttataggcgtgtgtcatgcagtccaagttttcattggtcat |
43015485 |
T |
|
| Q |
402 |
tagtgcgatgtatatgnnnnnnnnnaaacttattagcttgaagaattgttatttcttatatgaatattaagttggtggcggatggcattaagcatccttc |
501 |
Q |
| |
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||||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015484 |
tagtgtgatgtatatgttttttttgaaacttactagcttgaagaat-gttatttcttatatgaatattaagttggtggcggatggcattaagcatccttc |
43015386 |
T |
|
| Q |
502 |
agaggatatcaccgaatttggttctttgattgttgagtgtaacttcttttgtcggtacaagagcatgagtgctatcgtttgcttgacgtttactgaacac |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
43015385 |
agaggatatcaccgaatttggttctttgattgttgagtgtaacttcttttgtcggtacaagagcatgagtgttatcgtttgcttgacgtttactaaacac |
43015286 |
T |
|
| Q |
602 |
aactttgtaattgttgtgattcacgaggagagttttacaatcttgcaagatcacatcgtacactaagtgatttgatttatctttgttaa---catcatca |
698 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
43015285 |
aactttgtaattgttgtgattcacgaggagagttttacaatc-tgcaagatcacaccgtactctaagtgatttgatttatctttgttaacatcatcatca |
43015187 |
T |
|
| Q |
699 |
accaccattttacaatccaattccaatacacacagggacgctccaatgagttcaatcatttaagtgcacacagaaaaccccaacattcccacttttgctg |
798 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43015186 |
acaaccattttacaatccaattccaatacacacagggacgctctaatgagttcaatcattcaagtgcacacagaaaaccccaacattcccacttttgctg |
43015087 |
T |
|
| Q |
799 |
ctgtcatgacagcactgcaattatcagttata |
830 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
43015086 |
ctgtcatgacagcactgcaattatcagttata |
43015055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 560 - 656
Target Start/End: Original strand, 22944377 - 22944473
Alignment:
| Q |
560 |
aagagcatgagtgctatcgtttgcttgacgtttactgaacacaactttgtaattgttgtgattcacgaggagagttttacaatcttgcaagatcaca |
656 |
Q |
| |
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|||||||| ||| ||| | |||||||||||||| | ||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||| |
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| T |
22944377 |
aagagcataagtactaccatttgcttgacgtttggtaaacacaattttgtaattattgtgacgtgagaggagagttttgtaatcttgcaagatcaca |
22944473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 597 - 709
Target Start/End: Original strand, 36487941 - 36488053
Alignment:
| Q |
597 |
aacacaactttgtaattgttgtgattcacgaggagagttttacaatcttgcaagatcacatcgtacactaagtgatttgatttatctttgttaacatcat |
696 |
Q |
| |
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|||||||||||||| |||||||||||| ||| | | ||||||||||||| ||||||| | ||||| | |||||||| |||||| ||||||| ||||| |
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| T |
36487941 |
aacacaactttgtacctgttgtgattcatgagaataattttacaatcttggaagatcataccgtactttgagtgatttaatttatttttgttattatcat |
36488040 |
T |
|
| Q |
697 |
caaccaccatttt |
709 |
Q |
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||||||||||||| |
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| T |
36488041 |
caaccaccatttt |
36488053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 726
Target Start/End: Complemental strand, 52142087 - 52141963
Alignment:
| Q |
598 |
acacaactttgtaattgttgtgattcacgaggagagttttacaatcttgcaagatcacatcgtacactaagtgatttgatttatctttgttaacatcatc |
697 |
Q |
| |
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|||||||| ||| | ||||||||||| || | ||||||||||||||| |||||| ||| |||| || |||||||| | || |||||||| |||||| | |
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| T |
52142087 |
acacaactctgttagtgttgtgattcgtgaatacagttttacaatcttgtaagatcgcattgtactctgagtgatttaagttgtctttgttgacatcaac |
52141988 |
T |
|
| Q |
698 |
aaccaccattttacaatccaattccaata |
726 |
Q |
| |
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|| || ||||||||||| |||||||| |
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| T |
52141987 |
aa----caatttacaatccatttccaata |
52141963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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