View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_74 (Length: 211)
Name: NF9040_low_74
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 31727119 - 31727302
Alignment:
| Q |
9 |
ctttggtcatatcgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggtag |
108 |
Q |
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| T |
31727119 |
ctttggtcatagtgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggtag |
31727218 |
T |
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| Q |
109 |
gtttattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactcttattcctaacagtt |
192 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727219 |
gtttattagttaatttttctctgccacagtaattaagccctacttgccatttgttatatatttttactcttattcctaacagtt |
31727302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 39082482 - 39082652
Alignment:
| Q |
9 |
ctttggtcatatcgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggtag |
108 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082482 |
ctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggttt |
39082581 |
T |
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| Q |
109 |
gtttattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctt |
179 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082582 |
gtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctt |
39082652 |
T |
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