View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9040_low_8 (Length: 723)
Name: NF9040_low_8
Description: NF9040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9040_low_8 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 670; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 14 - 707
Target Start/End: Original strand, 41656040 - 41656733
Alignment:
| Q |
14 |
agcacagagcgtacgcaggagatggaaaactgcttcagcaaccatattctcttggctggttgcagactgaatcgcgtgccataagcatgtcatgctccaa |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41656040 |
agcactgagcgtacgcaggagatggaaaactgcttcagcaaccatattctcttggctggttgcagactgaatcgcgtgccataagcatgtcatgctccaa |
41656139 |
T |
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| Q |
114 |
acctgaactgcgaatgtacaatggaagcaaaggtgcgataaatcttcattggcggagtcgcagctgacacaattagttgggcattgcactcctttatcaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41656140 |
acctgaactgcgaatgtacaatggaagcaaaggtgcgataaatcttcattggcggagtcgcagctgacacaattagttgggcattgcactcctttatcaa |
41656239 |
T |
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| Q |
214 |
gcagtcgtatacgagtccacagaactcctctacatacttgccaaattaaatttctaacctttggcggaacctttaacctccaaatacctgaccaataccc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41656240 |
gcagtcgtatacgagtccacagaactcctctacatacttgccaaattaaatttctaacctttggcggaacctttaacctccaaatacctgaccaataccc |
41656339 |
T |
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| Q |
314 |
cgggtgccgtaaatgagacgtatcaattaattcctcaatacacagtctatacgcgctacatacagaatatttcccgttcctttccgctttccaaatgacc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41656340 |
cgggtgccgtaaatgagacgtatcaattaattcctcaacacacagtctatacgcgctacatacagaatatttcccgttcctttccgctttccaaatgagc |
41656439 |
T |
|
| Q |
414 |
ttatcctgctgtacctgaacaatcagaggcatatttaatatgacagcagcaatgtcatgactaaagatatgcctaatgagaggttcattccattttttct |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41656440 |
ttatcctgctgtacctgaacaatcagaggcatatttaatatgacagcagcaatgtcatgactaaagatatgcctaatgagaggttcattccattttttct |
41656539 |
T |
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| Q |
514 |
cattttcctccatcaaactgttgacagcaaaattctgaataagttgtgcgccttcaatatttccatcaatacgcctaccattcaaaagctaaggttcatt |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41656540 |
cattttcctccatcaaactgttgacagcaaaattctgaataagttgtgcgccttcaatatttccatcaatacgcctaccattcaaaagctaaggttcatt |
41656639 |
T |
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| Q |
614 |
aaggagtgaaatagaatcacctgtacccatactccatcttgcacccccacgtacaatttttgagttcctccaatgaggagagttttgtattatg |
707 |
Q |
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| T |
41656640 |
aaggagagaaatagaatcacctgtaccaatactccatcttgcacccccacgtacaatttttgagttcccccaatgaggagagttttgtattatg |
41656733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 707
Target Start/End: Complemental strand, 4003461 - 4003418
Alignment:
| Q |
665 |
tacaatttttgagttcctccaa-tgaggagagttttgtattatg |
707 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
4003461 |
tacaatttttgagttcccccaaatgaggagagttttgtattatg |
4003418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 707
Target Start/End: Original strand, 93554 - 93597
Alignment:
| Q |
665 |
tacaatttttgagttcctccaa-tgaggagagttttgtattatg |
707 |
Q |
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| T |
93554 |
tacaattttttagttcctccaaatgaggagagttttgtattatg |
93597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 707
Target Start/End: Original strand, 8828249 - 8828288
Alignment:
| Q |
668 |
aatttttgagttcctccaatgaggagagttttgtattatg |
707 |
Q |
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| T |
8828249 |
aatttttcagttcctcaaatgaggagagttttgtattatg |
8828288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 707
Target Start/End: Original strand, 52068185 - 52068228
Alignment:
| Q |
665 |
tacaatttttgagttcctccaa-tgaggagagttttgtattatg |
707 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
52068185 |
tacaattttttagttcctccaaatgaggagagttttgtattatg |
52068228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 706
Target Start/End: Original strand, 22788566 - 22788607
Alignment:
| Q |
665 |
tacaatttttgagttcctccaatgaggagagttttgtattat |
706 |
Q |
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|||||||||| |||||||| |||||| ||||||||||||||| |
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| T |
22788566 |
tacaattttttagttcctcaaatgagaagagttttgtattat |
22788607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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