View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9041_high_3 (Length: 390)
Name: NF9041_high_3
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9041_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 11517053 - 11517396
Alignment:
| Q |
11 |
acatcagagaaaagggcttaaagcatgtggtggttttctgacgtgcttttctgccaatgcccgaaatgaacagcagcaatccgtacatgatcatgtcgac |
110 |
Q |
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| T |
11517053 |
acatcagagaaaagggcttaaagcatgtggtggttttctgacgtgcttttctgccaatgccagaaatgaacagcagcaatccgtacatgatcatgtcgac |
11517152 |
T |
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| Q |
111 |
aacaacaccgaggatatcataaggggaagaagagtggcttccacgacagcagtcgatgaaaagcatctcgctaaaatcgcagatgcattcaaagagctag |
210 |
Q |
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| T |
11517153 |
aacaacactgaggatatcataagaggaagaagagtggcttccacgacagcagtcgatgaaaagcatctcgctaaaatcgcagatgcattcaaagagctag |
11517252 |
T |
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| Q |
211 |
caaatgccatcgtcaacgaaaatatgatcgaggttgctgctttttcccgtgcatgttcttttgtagctcccctttttggtagtgttggctttcatttcca |
310 |
Q |
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| T |
11517253 |
caaatgccatcgtcaacgaaaatatgatcgaggttgctgctttttcccgtgcatgttcttttgtagctcccctttttggtagtgttggctttcatttcca |
11517352 |
T |
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| Q |
311 |
attcattgagatggattacgttaccaaggtaagctaccagtaaa |
354 |
Q |
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| T |
11517353 |
gttcattgagatggattacgttaccaaggtaagctaccagtaaa |
11517396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 39748009 - 39747969
Alignment:
| Q |
78 |
gaacagcagcaatccgtacatgatcatgtcgacaacaacac |
118 |
Q |
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| T |
39748009 |
gaacagcagcaatatgtacatgatcatgttgacaacaacac |
39747969 |
T |
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