View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9041_low_1 (Length: 995)

Name: NF9041_low_1
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9041_low_1
NF9041_low_1
[»] chr5 (10 HSPs)
chr5 (298-951)||(1008541-1009181)
chr5 (16-218)||(1012793-1013000)
chr5 (664-726)||(19186430-19186492)
chr5 (674-718)||(1012226-1012270)
chr5 (649-712)||(10950919-10950982)
chr5 (159-209)||(6383750-6383800)
chr5 (162-212)||(18923721-18923771)
chr5 (674-724)||(42948178-42948228)
chr5 (671-728)||(8609195-8609252)
chr5 (162-211)||(16049620-16049669)
[»] scaffold0040 (1 HSPs)
scaffold0040 (12-133)||(68335-68456)
[»] chr2 (11 HSPs)
chr2 (646-719)||(74380-74453)
chr2 (671-719)||(529613-529661)
chr2 (674-725)||(8194276-8194327)
chr2 (672-724)||(528909-528961)
chr2 (671-711)||(34238828-34238868)
chr2 (644-711)||(13545340-13545407)
chr2 (672-711)||(34239582-34239621)
chr2 (644-711)||(41320020-41320087)
chr2 (643-709)||(32361968-32362034)
chr2 (162-211)||(41055757-41055806)
chr2 (642-711)||(41320751-41320820)
[»] chr8 (9 HSPs)
chr8 (12-133)||(7253003-7253128)
chr8 (674-724)||(5389671-5389721)
chr8 (674-725)||(5390170-5390221)
chr8 (645-711)||(19971257-19971323)
chr8 (645-711)||(21021486-21021552)
chr8 (154-211)||(7253154-7253211)
chr8 (647-711)||(19970563-19970627)
chr8 (647-711)||(21022182-21022246)
chr8 (675-711)||(32319831-32319867)
[»] chr3 (12 HSPs)
chr3 (665-717)||(10973117-10973169)
chr3 (674-725)||(15274053-15274104)
chr3 (672-711)||(23310511-23310550)
chr3 (154-213)||(27657930-27657989)
chr3 (672-711)||(32982279-32982318)
chr3 (674-724)||(40872921-40872971)
chr3 (659-712)||(33639639-33639692)
chr3 (674-719)||(40877273-40877318)
chr3 (155-190)||(12009875-12009910)
chr3 (674-724)||(15269703-15269753)
chr3 (642-711)||(37065978-37066046)
chr3 (671-712)||(52341346-52341387)
[»] chr4 (5 HSPs)
chr4 (644-727)||(53994420-53994503)
chr4 (659-725)||(54157279-54157345)
chr4 (162-210)||(5826668-5826716)
chr4 (162-210)||(35346299-35346347)
chr4 (672-717)||(22405335-22405380)
[»] chr7 (9 HSPs)
chr7 (16-130)||(2704236-2704350)
chr7 (12-134)||(328255-328378)
chr7 (154-207)||(32839175-32839228)
chr7 (15-133)||(12653797-12653912)
chr7 (154-209)||(2704152-2704207)
chr7 (674-725)||(12263363-12263414)
chr7 (24-110)||(26049596-26049683)
chr7 (154-209)||(26762381-26762436)
chr7 (20-133)||(37625715-37625825)
[»] chr6 (4 HSPs)
chr6 (642-716)||(20349313-20349389)
chr6 (674-725)||(11324749-11324800)
chr6 (674-725)||(13220879-13220930)
chr6 (674-724)||(13225225-13225275)
[»] scaffold0021 (1 HSPs)
scaffold0021 (667-719)||(120569-120621)
[»] chr1 (7 HSPs)
chr1 (672-711)||(39773408-39773447)
chr1 (642-711)||(17238447-17238516)
chr1 (672-711)||(4968932-4968971)
chr1 (642-709)||(6632056-6632123)
chr1 (673-712)||(19990286-19990325)
chr1 (20-133)||(46210525-46210635)
chr1 (659-724)||(29981268-29981333)


Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 298 - 951
Target Start/End: Complemental strand, 1009181 - 1008541
Alignment:
Q  298 aacaatctaaaacattaaagaggagactaatggccgctagggaaggaagggggagaacaataactaagatccgttaaaaaaccaagatgttttttacaac 397  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1009181 aacaatctaaaacattaaagaggagactaatgactgctagggaaggaagggggagaacaataactaagatccgttaaaaaaccaagatgtttgttacaac 1009082  T
Q  398 caacatcaatcacatccctaaaaatatgtttgtaaataattgcaggaggaaagttaaaagaagaaacaaaaccaacgaaaaccattactagaattaatga 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  1009081 caacatcaatcacatccctaaaaatatgtttgtaaataattgcaggaggaaagttaaa-gaagaaacaaaactaacgaaaaccattactagaattaatga 1008983  T
Q  498 attgaaatgggtgatgatagcatccaaaaaatgagagtgaaacgatacatgggagaggttagatttttcatcaattgcatgaagcaaacaaatgaataga 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1008982 attgaaatgggtgatgatagcatccaaaaaatgagagtgaaacgatacatgggagaggttagatttttcatcaattgcaggaagcaaacaaatgaataga 1008883  T
Q  598 agagaaatactgtaggagaacataatttaggggtcatgtgtttcaaccattagattaaaacaaaataaagggataagatttggagtaagtcaatagactt 697  Q
    ||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||           ||||||    
T  1008882 agagaaatagtgtaggagaacataatttagggttcatgtgtttgaaccattagattaaaataaaataaagggataagatttgg-----------agactt 1008794  T
Q  698 actcttggagtcaatggatcccctctcttattttattatattttaggttgtattaaaaaactgatgattaatcttttgcacaattttatattgaagatta 797  Q
    || ||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1008793 ac-cttagagtcaatggatccctcatcttattttattatattttaggttgtattaaaaaactgatgattaatcttttgcacaattttatattgaagatta 1008695  T
Q  798 tatgcattaaaaattaacatacacacttgcatggatacaaacatgcacttgtgcatttgtttaaaatagaacgccattatcataattcacacataacatt 897  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1008694 tatgcattaaaaattaacatacacactcgcatgtatacaaacatgcacttgtgcatttgtttaaaatagaacgtcattatcataattcacacataacatt 1008595  T
Q  898 caaaatctcagagataactctatctatgcagttagggagggaacccacataaac 951  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1008594 caaaatctcagagataactctatctatgcagttagggagggaacccacttaaac 1008541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 1013000 - 1012793
Alignment:
Q  16 agagacatggagggggtgaaagaaagatgatggaataatgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagtttttaaat 115  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||| |||||| ||||||||||||| || ||||||||||||||    
T  1013000 agagacatggagggggtgaaagaaagatgatggaatggtgtaaaaagtatctagttttgagagagcataatgatactatggtcttcaaaagtttttaaat 1012901  T
Q  116 atatccaatggttaacatttcttttgcgnnnnnnnnngaa-----gtcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcct 210  Q
    |||||||||||||||||||||||||||           ||     ||||| |||||||||||||||||||||||||||||| |||||  || ||||||||    
T  1012900 atatccaatggttaacatttcttttgcaaaaaaaaaaaaaaaaaggtcaagtctcctacggtaggagatctaaagaggtcacctaccatagtctttgcct 1012801  T
Q  211 taaaacac 218  Q
    ||||||||    
T  1012800 taaaacac 1012793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 664 - 726
Target Start/End: Complemental strand, 19186492 - 19186430
Alignment:
Q  664 aaagggataagatttggagtaagtcaatagacttactcttggagtcaatggatcccctctctt 726  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||||| |||| | ||||||    
T  19186492 aaagggttaagatttggagtaagtctttagacttactcttggagtcaattgatctcttctctt 19186430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 674 - 718
Target Start/End: Original strand, 1012226 - 1012270
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatcc 718  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||    
T  1012226 gatttgaagtaagtcaataaacttactcttggagtcaatgaatcc 1012270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 712
Target Start/End: Original strand, 10950919 - 10950982
Alignment:
Q  649 agattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaat 712  Q
    ||||||||| ||||| || || |||||||||||||||||  | ||| |||||||||||||||||    
T  10950919 agattaaaagaaaattaatggttaagatttggagtaagtacaaagatttactcttggagtcaat 10950982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 6383750 - 6383800
Alignment:
Q  159 aaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcc 209  Q
    |||||||||||||||||||| ||||||||| |  |||||| ||||||||||    
T  6383750 aaatctcctacggtaggagacctaaagaggcctcctaccgtagcctttgcc 6383800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 18923771 - 18923721
Alignment:
Q  162 tctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcctta 212  Q
    |||||||||||||||||||||||||||||  |||||  |||||||| ||||    
T  18923771 tctcctacggtaggagatctaaagaggtctcctaccatagcctttgtctta 18923721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 674 - 724
Target Start/End: Original strand, 42948178 - 42948228
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 724  Q
    |||| ||||||| ||  ||||||||||||||||||||||||||||| ||||    
T  42948178 gattgggagtaactctttagacttactcttggagtcaatggatcccttctc 42948228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 671 - 728
Target Start/End: Complemental strand, 8609252 - 8609195
Alignment:
Q  671 taagatttggagtaagtcaatagacttactcttggagtcaatggatcccctctcttat 728  Q
    ||||||||||||||| |   || ||||||||||||||||||||||||||  |||||||    
T  8609252 taagatttggagtaactatttatacttactcttggagtcaatggatccctcctcttat 8609195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 16049669 - 16049620
Alignment:
Q  162 tctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcctt 211  Q
    |||||||||| |||||| |||||||||| | |||||| ||||||||||||    
T  16049669 tctcctacggcaggagacctaaagaggttacctaccgtagcctttgcctt 16049620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 68456 - 68335
Alignment:
Q  12 aagcagagacatggagggggtgaaagaaagatgatggaataatgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagttttt 111  Q
    |||||||||||||||| |||| | |||| ||||||| |||| ||||||||||||||||||||||| ||| || || |||  ||| | || ||||||||||    
T  68456 aagcagagacatggagagggttagagaaggatgatgaaatagtgtaaaaagtatctagtgttgagagagtataataatatcatgatcttcaaaagttttt 68357  T
Q  112 aaatatatccaatggttaacat 133  Q
    ||||||||||||||||||||||    
T  68356 aaatatatccaatggttaacat 68335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 646 - 719
Target Start/End: Complemental strand, 74453 - 74380
Alignment:
Q  646 attagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaatggatccc 719  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||| || ||||||||| |||||    
T  74453 attagattaaaacaaaattaagggataaggtttagagtaagtcaatagagttacttttagagtcaatgaatccc 74380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 671 - 719
Target Start/End: Original strand, 529613 - 529661
Alignment:
Q  671 taagatttggagtaagtcaatagacttactcttggagtcaatggatccc 719  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||    
T  529613 taagatttggagtaagtctttatacttactcttggagtcaatggatccc 529661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 674 - 725
Target Start/End: Original strand, 8194276 - 8194327
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 725  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||| |||||    
T  8194276 gatttggagtaactctttagacttactcttggagtcaatggatcccttctct 8194327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 672 - 724
Target Start/End: Complemental strand, 528961 - 528909
Alignment:
Q  672 aagatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 724  Q
    |||||||||||||||||  || |||||||||||||||| ||||||||| ||||    
T  528961 aagatttggagtaagtctttatacttactcttggagtccatggatcccttctc 528909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 671 - 711
Target Start/End: Complemental strand, 34238868 - 34238828
Alignment:
Q  671 taagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  34238868 taagatttggagtaagtctatagacttacttttggagtcaa 34238828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 711
Target Start/End: Original strand, 13545340 - 13545407
Alignment:
Q  644 ccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    |||||||||||||| || || || ||   |||||||||||||||| ||| ||||||||||||||||||    
T  13545340 ccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtcaa 13545407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 711
Target Start/End: Original strand, 34239582 - 34239621
Alignment:
Q  672 aagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  34239582 aagatttggagtaaatctatagacttactcttggagtcaa 34239621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 711
Target Start/End: Complemental strand, 41320087 - 41320020
Alignment:
Q  644 ccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    |||||||||||||| || || || ||   |||||||||||||||| ||| ||||||||||||||||||    
T  41320087 ccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtcaa 41320020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 643 - 709
Target Start/End: Original strand, 32361968 - 32362034
Alignment:
Q  643 accattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtc 709  Q
    |||||||||||||||||||||| | ||    ||||||||  ||||| ||||||||||||||||||||    
T  32361968 accattagattaaaacaaaatagatggtagtgatttggaaaaagtctatagacttactcttggagtc 32362034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 41055806 - 41055757
Alignment:
Q  162 tctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcctt 211  Q
    ||||||||||||||||| |||| ||||||| |||||| |||||| |||||    
T  41055806 tctcctacggtaggagacctaaggaggtcacctaccgtagccttggcctt 41055757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 642 - 711
Target Start/End: Original strand, 41320751 - 41320820
Alignment:
Q  642 aaccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    |||||||||||||||| || || || ||   |||||||||||||||| ||| ||||||| ||||||||||    
T  41320751 aaccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactattggagtcaa 41320820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 7253003 - 7253128
Alignment:
Q  12 aagcagagacatggagggggt----gaaagaaagatgatggaataatgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagt 107  Q
    |||||||||||||||| ||||    ||| || | ||||||||||| ||||||||||||||||||||||| ||| || || |||  |||||  | ||||||    
T  7253003 aagcagagacatggagagggttagagaaggatatatgatggaatagtgtaaaaagtatctagtgttgagagagtataataatatcatggtcatcaaaagt 7253102  T
Q  108 ttttaaatatatccaatggttaacat 133  Q
    ||| |||||||||||||| |||||||    
T  7253103 tttcaaatatatccaatgattaacat 7253128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 674 - 724
Target Start/End: Complemental strand, 5389721 - 5389671
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 724  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  5389721 gatttggagtaagtctttagacttactcttggagtcaatggatcccttctc 5389671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 674 - 725
Target Start/End: Original strand, 5390170 - 5390221
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 725  Q
    |||||||||||||||  |||||||||||| |||||||||||||||| |||||    
T  5390170 gatttggagtaagtctttagacttactctaggagtcaatggatcccttctct 5390221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 645 - 711
Target Start/End: Original strand, 19971257 - 19971323
Alignment:
Q  645 cattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    |||| ||||||||||||||| ||||||  ||||| |||||| |||| ||| ||||||||||||||||    
T  19971257 cattggattaaaacaaaatagagggatgtgatttagagtaactcaaaagagttactcttggagtcaa 19971323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 645 - 711
Target Start/End: Complemental strand, 21021552 - 21021486
Alignment:
Q  645 cattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    |||| ||||||||||||||| ||||||  ||||| |||||| |||| ||| ||||||||||||||||    
T  21021552 cattggattaaaacaaaatagagggatgtgatttagagtaactcaaaagagttactcttggagtcaa 21021486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 7253154 - 7253211
Alignment:
Q  154 aagtcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcctt 211  Q
    ||||||| ||||||||||||||||| |||||||| ||  |||||| ||||||||||||    
T  7253154 aagtcaagtctcctacggtaggagacctaaagagatcgcctaccgtagcctttgcctt 7253211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 647 - 711
Target Start/End: Complemental strand, 19970627 - 19970563
Alignment:
Q  647 ttagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    |||||||||||| ||||  ||||||  |||||||||||| |||| ||| ||||||||||||||||    
T  19970627 ttagattaaaactaaatggagggatgtgatttggagtaactcaaaagagttactcttggagtcaa 19970563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 647 - 711
Target Start/End: Original strand, 21022182 - 21022246
Alignment:
Q  647 ttagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    |||||||||||| ||||  ||||||  |||||||||||| |||| ||| ||||||||||||||||    
T  21022182 ttagattaaaactaaatggagggatgtgatttggagtaactcaaaagagttactcttggagtcaa 21022246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 675 - 711
Target Start/End: Original strand, 32319831 - 32319867
Alignment:
Q  675 atttggagtaagtcaatagacttactcttggagtcaa 711  Q
    ||||||||||||| |||||||||||||||||||||||    
T  32319831 atttggagtaagttaatagacttactcttggagtcaa 32319867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 665 - 717
Target Start/End: Original strand, 10973117 - 10973169
Alignment:
Q  665 aagggataagatttggagtaagtcaatagacttactcttggagtcaatggatc 717  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  10973117 aagggataagatttggagtaagtcaatagagttactcttagagtcaatggatc 10973169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 674 - 725
Target Start/End: Original strand, 15274053 - 15274104
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 725  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| |||||    
T  15274053 gatttggagtaagtgtttagacttactcttggagtcaatggatcccttctct 15274104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 672 - 711
Target Start/End: Complemental strand, 23310550 - 23310511
Alignment:
Q  672 aagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  23310550 aagatttggagtaagtctatagacttactcttggagtcaa 23310511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 27657930 - 27657989
Alignment:
Q  154 aagtcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgccttaa 213  Q
    ||||||| ||||||||||||||||| |||||||||||  |||||| ||| ||||||||||    
T  27657930 aagtcaagtctcctacggtaggagacctaaagaggtctcctaccgtagcgtttgccttaa 27657989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 672 - 711
Target Start/End: Complemental strand, 32982318 - 32982279
Alignment:
Q  672 aagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  32982318 aagatttggagtaagtctatagacttactcttggagtcaa 32982279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 674 - 724
Target Start/End: Complemental strand, 40872971 - 40872921
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 724  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| ||||    
T  40872971 gatttggagtaagtgtttagacttactcttggagtcaatggatcccttctc 40872921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 712
Target Start/End: Original strand, 33639639 - 33639692
Alignment:
Q  659 aaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaat 712  Q
    ||||| ||||| |||||| |||||||||||  ||||||||||||||||||||||    
T  33639639 aaaatgaagggttaagatctggagtaagtctttagacttactcttggagtcaat 33639692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 674 - 719
Target Start/End: Original strand, 40877273 - 40877318
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatccc 719  Q
    ||||||||||||||   |||||||||||||||||||||||||||||    
T  40877273 gatttggagtaagtgtttagacttactcttggagtcaatggatccc 40877318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 12009875 - 12009910
Alignment:
Q  155 agtcaaatctcctacggtaggagatctaaagaggtc 190  Q
    |||||| |||||||||||||||||||||||||||||    
T  12009875 agtcaagtctcctacggtaggagatctaaagaggtc 12009910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 674 - 724
Target Start/End: Complemental strand, 15269753 - 15269703
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 724  Q
    |||||| |||||||   ||||||||||||||||||||||||||||| ||||    
T  15269753 gatttgaagtaagtgtttagacttactcttggagtcaatggatcccttctc 15269703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 642 - 711
Target Start/End: Complemental strand, 37066046 - 37065978
Alignment:
Q  642 aaccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    |||| ||||||||||| | ||| |||||  ||||||||||||||||  | ||||||||||||||||||||    
T  37066046 aaccgttagattaaaa-agaattaagggcaaagatttggagtaagtttagagacttactcttggagtcaa 37065978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 671 - 712
Target Start/End: Complemental strand, 52341387 - 52341346
Alignment:
Q  671 taagatttggagtaagtcaatagacttactcttggagtcaat 712  Q
    ||||||||||||||| |  |||||||||||||||||||||||    
T  52341387 taagatttggagtaattgtatagacttactcttggagtcaat 52341346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 644 - 727
Target Start/End: Original strand, 53994420 - 53994503
Alignment:
Q  644 ccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaatggatcccctctctta 727  Q
    ||||||||| |||||||||| |||||  | |||||||||||| ||  ||||||||||| ||||||||||||||||| |||||||    
T  53994420 ccattagatcaaaacaaaattaagggtcatgatttggagtaactctttagacttactcctggagtcaatggatcccttctctta 53994503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 659 - 725
Target Start/End: Complemental strand, 54157345 - 54157279
Alignment:
Q  659 aaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 725  Q
    ||||| |||||  |||||||||||||||||  ||||||||||||||||||| |||||||| ||||||    
T  54157345 aaaatgaagggtcaagatttggagtaagtctttagacttactcttggagtcgatggatcctctctct 54157279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 5826716 - 5826668
Alignment:
Q  162 tctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcct 210  Q
    ||||||||||||||||||||||||| |||  |||||| |||||||||||    
T  5826716 tctcctacggtaggagatctaaagaagtctcctaccgtagcctttgcct 5826668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 35346347 - 35346299
Alignment:
Q  162 tctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcct 210  Q
    ||||||||||||||||| |||||||||||  |||||| |||||||||||    
T  35346347 tctcctacggtaggagacctaaagaggtcgcctaccgtagcctttgcct 35346299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 672 - 717
Target Start/End: Original strand, 22405335 - 22405380
Alignment:
Q  672 aagatttggagtaagtcaatagacttactcttggagtcaatggatc 717  Q
    ||||||||||||||||   |||||||||||||| ||||||||||||    
T  22405335 aagatttggagtaagtatttagacttactcttgaagtcaatggatc 22405380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 2704350 - 2704236
Alignment:
Q  16 agagacatggagggggtgaaagaaagatgatggaataatgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagtttttaaat 115  Q
    |||||||||||| |||| | |||| |||||||||||| |||||||||||||||| |||||| ||| || || |||  |||||  | | ||  ||||||||    
T  2704350 agagacatggagagggttagagaaggatgatggaatagtgtaaaaagtatctagcgttgagagagtataataatatcatggtcatcagaaaattttaaat 2704251  T
Q  116 atatccaatggttaa 130  Q
    |||||||||||||||    
T  2704250 atatccaatggttaa 2704236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 328378 - 328255
Alignment:
Q  12 aagcagagacatggagggggtgaaagaaagatgatggaa--taatgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagttt 109  Q
    |||||||||||||||| | | || ||||  |||||||||  || ||||||||  ||||||||||||| ||| ||  | |||||||||| || ||||| ||    
T  328378 aagcagagacatggagagagagagagaagaatgatggaacatagtgtaaaaataatctagtgttgagagagtatt-taatactatggtcttcaaaagctt 328280  T
Q  110 ttaaatatatccaatggttaacatt 134  Q
    | ||||||||||||||||| |||||    
T  328279 tcaaatatatccaatggttgacatt 328255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 32839175 - 32839228
Alignment:
Q  154 aagtcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttg 207  Q
    ||||||| |||||||||||||||||||||||||||||  | |||| ||||||||    
T  32839175 aagtcaagtctcctacggtaggagatctaaagaggtctcccaccgtagcctttg 32839228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 12653912 - 12653797
Alignment:
Q  15 cagagacatggagggggtgaaagaaagatgatggaataatgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagtttttaaa 114  Q
    |||| |||||||||||| || |||| |||||||||||   |||||||| || |||||||||| ||| ||||| |||| ||||| || ||||  ||| ||     
T  12653912 cagaaacatggagggggagagagaatgatgatggaat---gtaaaaagaatgtagtgttgagagagtatgataataccatggtcttcaaaaaatttcaag 12653816  T
Q  115 tatatccaatggttaacat 133  Q
    || ||||||||||| ||||    
T  12653815 tacatccaatggttgacat 12653797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 2704207 - 2704152
Alignment:
Q  154 aagtcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcc 209  Q
    |||| |||||||||||| ||||||| |||||||||||  |||||| ||||||||||    
T  2704207 aagttaaatctcctacgataggagacctaaagaggtcgcctaccgtagcctttgcc 2704152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 674 - 725
Target Start/End: Original strand, 12263363 - 12263414
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 725  Q
    |||||| |||||||   ||||||||||||||||||||||||||||| |||||    
T  12263363 gatttgtagtaagtgtttagacttactcttggagtcaatggatcccttctct 12263414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 26049596 - 26049683
Alignment:
Q  24 ggagggggtgaaagaaagatgatggaataa-tgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagtttt 110  Q
    |||||||| || |||| |||||||||| |  ||||||||| ||||||||||||| |||  |||| |||||||||| ||||||| ||||    
T  26049596 ggagggggggagagaatgatgatggaacatgtgtaaaaagaatctagtgttgagagagtgtgataatactatggtctttaaaattttt 26049683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 26762381 - 26762436
Alignment:
Q  154 aagtcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcc 209  Q
    ||||||| ||||||||||||||||| | |||||||||  |||||| ||||||||||    
T  26762381 aagtcaagtctcctacggtaggagacccaaagaggtcgcctaccgtagcctttgcc 26762436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 37625825 - 37625715
Alignment:
Q  20 acatggagggggtgaaagaaagatgatggaataatgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagtttttaaatatat 119  Q
    |||||||||||| || |||| |||||||||||   |||||||| || |||||||||| ||| ||||| |||| ||||| || ||||  ||| || || ||    
T  37625825 acatggagggggagagagaatgatgatggaat---gtaaaaagaatgtagtgttgagagagtatgataataccatggtcttcaaaaaatttcaagtacat 37625729  T
Q  120 ccaatggttaacat 133  Q
    ||||||||| ||||    
T  37625728 ccaatggttgacat 37625715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 716
Target Start/End: Original strand, 20349313 - 20349389
Alignment:
Q  642 aaccattagattaaaacaaaataaagggataagatttggagta--agtcaatagacttactcttggagtcaatggat 716  Q
    |||||||||||||| |||| || ||||||||||||||||||||  |  ||||| |||||||||||||||||||||||    
T  20349313 aaccattagattaagacaacatgaagggataagatttggagtaacacgcaataaacttactcttggagtcaatggat 20349389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 674 - 725
Target Start/End: Complemental strand, 11324800 - 11324749
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 725  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| |||||    
T  11324800 gatttggagtaagtgtttagacttactcttggagtcaatggatcccttctct 11324749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 674 - 725
Target Start/End: Complemental strand, 13220930 - 13220879
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 725  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| |||||    
T  13220930 gatttggagtaagtgtttagacttactcttggagtcaatggatcccttctct 13220879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 674 - 724
Target Start/End: Original strand, 13225225 - 13225275
Alignment:
Q  674 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 724  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| ||||    
T  13225225 gatttggagtaagtgtttagacttactcttggagtcaatggatcccttctc 13225275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 719
Target Start/End: Original strand, 120569 - 120621
Alignment:
Q  667 gggataagatttggagtaagtcaatagacttactcttggagtcaatggatccc 719  Q
    |||||||||||||||||||||||||||| |||||| | |||||||||| ||||    
T  120569 gggataagatttggagtaagtcaatagagttactcatagagtcaatgggtccc 120621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 672 - 711
Target Start/End: Original strand, 39773408 - 39773447
Alignment:
Q  672 aagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  39773408 aagatttggagtaagttaatagacttactcttggagtcaa 39773447  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 711
Target Start/End: Original strand, 17238447 - 17238516
Alignment:
Q  642 aaccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    |||||||||||||||| || || || ||   |||||||||||||||| ||| ||||||||||||||||||    
T  17238447 aaccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtcaa 17238516  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 711
Target Start/End: Original strand, 4968932 - 4968971
Alignment:
Q  672 aagatttggagtaagtcaatagacttactcttggagtcaa 711  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  4968932 aagatttggagtaagtttatagacttactcttggagtcaa 4968971  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 709
Target Start/End: Original strand, 6632056 - 6632123
Alignment:
Q  642 aaccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtc 709  Q
    |||||||||||||||| || || || ||   |||||||||||||||| ||| ||||||||||||||||    
T  6632056 aaccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtc 6632123  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 673 - 712
Target Start/End: Complemental strand, 19990325 - 19990286
Alignment:
Q  673 agatttggagtaagtcaatagacttactcttggagtcaat 712  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  19990325 agatttggagtaagtctttagacttactcttggagtcaat 19990286  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 46210635 - 46210525
Alignment:
Q  20 acatggagggggtgaaagaaagatgatggaataatgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagtttttaaatatat 119  Q
    |||||||||||| || |||| |||||||||||   |||||||| || |||||||||| ||| ||||| |||| ||| |||| ||||  ||| || || ||    
T  46210635 acatggagggggagagagaatgatgatggaat---gtaaaaagaatgtagtgttgagagagtatgataataccatgattttcaaaaaatttcaagtacat 46210539  T
Q  120 ccaatggttaacat 133  Q
    ||||||||| ||||    
T  46210538 ccaatggttgacat 46210525  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 659 - 724
Target Start/End: Complemental strand, 29981333 - 29981268
Alignment:
Q  659 aaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 724  Q
    |||||| |||| ||||||  ||||||||||  || |||||||||| ||||||||||||||| ||||    
T  29981333 aaaatagagggttaagatgcggagtaagtctttacacttactcttagagtcaatggatcccttctc 29981268  T

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