View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9041_low_17 (Length: 360)
Name: NF9041_low_17
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9041_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 34954899 - 34955224
Alignment:
| Q |
15 |
tggacatcaataaattttcaagagtttgaaatgctcatctttctgtcgttttttcagcctccatacagaaaaacataaccatgatcaaagccatcaaatg |
114 |
Q |
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| T |
34954899 |
tggacatcaataaattttcaagagtttgaaatgctcatctttctgtcgttttttcagcctccatacagaaaaacataaccatgatcaaagccatcaaatg |
34954998 |
T |
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| Q |
115 |
ataacagagatcgcattattgaaaaattgtgttatctcagaggagactaacacttaaataaaggaactccaatgtaccacaattattttccaaataaacc |
214 |
Q |
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| T |
34954999 |
ataacagagatcgcattattgaaaaattgtgttatctcagaggagactaacacttaaataaaggaactccaatgtaccacaattattttccaaataaact |
34955098 |
T |
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| Q |
215 |
aacacttctataaattccggtcagcaactgcaattgtggccgtaatatacaaaggttttagatgtctttgaaaagtcatcgcaaccgtaattgtggacgc |
314 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34955099 |
aacacttctataaattgcggtcagcaactgcaattgtggccgtaatatacaaaggttttagatgtctttgaaaagtcatcgcaaccgtaattgcggacgc |
34955198 |
T |
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| Q |
315 |
atcggttggcatttgcctacattttg |
340 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34955199 |
atcggttggcatttgcctacattttg |
34955224 |
T |
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