View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9041_low_20 (Length: 304)

Name: NF9041_low_20
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9041_low_20
NF9041_low_20
[»] scaffold0428 (3 HSPs)
scaffold0428 (13-292)||(2315-2594)
scaffold0428 (67-292)||(15059-15278)
scaffold0428 (66-192)||(13771-13896)
[»] chr6 (11 HSPs)
chr6 (13-292)||(33258194-33258473)
chr6 (13-287)||(33414568-33414840)
chr6 (37-235)||(31564920-31565117)
chr6 (13-210)||(33269541-33269740)
chr6 (143-292)||(33293102-33293251)
chr6 (36-287)||(33395074-33395326)
chr6 (34-133)||(33384049-33384148)
chr6 (67-292)||(33278975-33279194)
chr6 (189-281)||(28872999-28873091)
chr6 (53-192)||(33406911-33407049)
chr6 (66-192)||(33280357-33280482)
[»] chr2 (1 HSPs)
chr2 (34-292)||(17447703-17447961)


Alignment Details
Target: scaffold0428 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 2315 - 2594
Alignment:
Q  13 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2315 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 2414  T
Q  113 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2415 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 2514  T
Q  213 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2515 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtt 2594  T

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Target: scaffold0428; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 67 - 292
Target Start/End: Complemental strand, 15278 - 15059
Alignment:
Q  67 aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttct 166  Q
    ||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||  |||||||||||| || || |||||||| ||||||||||    |    
T  15278 aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg-tatgtaccaattcttcctt----t 15184  T
Q  167 gctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttct 266  Q
      |||  | ||||||||||| ||||| ||| |||||||||||||  | || |||||||||| ||||||| ||| |||||| ||||||||| | || || |    
T  15183 agtagcttgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattat 15085  T
Q  267 tacagtccatcatccctgcacaggtt 292  Q
    ||||||||||| |||| |||| ||||    
T  15084 tacagtccatcgtcccagcaccggtt 15059  T

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Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 13896 - 13771
Alignment:
Q  66 aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttc 165  Q
    |||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| ||||||| |||||||| || || || |||| ||||| ||||||  |    
T  13896 aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg-taggtactgattcctccttcagc 13798  T
Q  166 tgctagtctcccggatttcttatcagc 192  Q
    |  || ||| ||||||||||| |||||    
T  13797 ttttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 33258194 - 33258473
Alignment:
Q  13 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258194 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 33258293  T
Q  113 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258294 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 33258393  T
Q  213 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33258394 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtt 33258473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 33414568 - 33414840
Alignment:
Q  13 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 112  Q
    |||||||||||| ||  ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  33414568 gaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaa 33414666  T
Q  113 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 212  Q
    |||||||||||||  ||| |||| || || ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||      
T  33414667 ttagaacaccaatacgtgcatcgtgaatg-tatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccctttttcc 33414765  T
Q  213 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcac 287  Q
    ||||||||||||||| |||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  33414766 tgagatatgcttgcgccttttcaagatcgccttccgtttcagcaagagctttcttacagtccatcatccctgcac 33414840  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 31565117 - 31564920
Alignment:
Q  37 tgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgc 136  Q
    |||||||||||||| | |||||||||||| |||||||||||||| || | |||||| |||||||  ||||||||||||||||||| |||| ||||||||     
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  137 gagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttca 235  Q
    || || ||||||||||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||  |||| |||||||||| |||||||    
T  31565017 gaatg-tatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 31564920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 33269541 - 33269740
Alignment:
Q  13 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 112  Q
    |||||||||||| ||  ||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  33269541 gaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaa 33269639  T
Q  113 ttagaacaccaatgtgtgaatcgcgagtg---atatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttt 209  Q
    |||||||||| |||  || || | || ||   |||||||||||||||| ||||  ||||||||||  | || ||||||||||||||||||||||||||||    
T  33269640 ttagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagagaccctttt 33269739  T

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Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 143 - 292
Target Start/End: Original strand, 33293102 - 33293251
Alignment:
Q  143 tatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcac 242  Q
    |||||||| |||||||||||  |||||||||| | |||||||||||||||| ||||||||||||||||  |||| ||||||| |  ||||||||||||||    
T  33293102 tatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcaccttttcaagatcac 33293201  T
Q  243 cttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 292  Q
    |||||||||| ||| ||||||||||||||||||||||||| |||| ||||    
T  33293202 cttctgtttcagcatgagctttcttacagtccatcatcccagcaccggtt 33293251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 36 - 287
Target Start/End: Original strand, 33395074 - 33395326
Alignment:
Q  36 ttgcattgcaagatcgtcaaccaactccttaaatttctcacttctg--ccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 133  Q
    |||||||| ||||||  ||||||||||||| ||| | |||||||||  ||||||||||||||||||| |||||||||||| ||||||   ||| ||| ||    
T  33395074 ttgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaacatagatgcgtgcat 33395173  T
Q  134 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggctttt 233  Q
    ||  | || ||| ||||||||||||||||  ||||||| || ||||||||||| ||||| ||||||||||||||| |  | || |||| ||| | |||||    
T  33395174 cgtcaatg-tatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagaccctttgttctaaggtatgattgggcctttt 33395272  T
Q  234 caagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcac 287  Q
    ||||||||||||  ||||||||    ||||||||||||||||| ||||| ||||    
T  33395273 caagatcacctttagtttcggctaaggctttcttacagtccataatcccagcac 33395326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 33384049 - 33384148
Alignment:
Q  34 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 133  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||    
T  33384049 acttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgatgtgtgaat 33384148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 67 - 292
Target Start/End: Original strand, 33278975 - 33279194
Alignment:
Q  67 aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttct 166  Q
    ||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||  |||||||||||| || || |||||||| ||||||||||    |    
T  33278975 aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg-tatgtaccaattcttcctt----t 33279069  T
Q  167 gctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttct 266  Q
      |||  | ||||||||||| ||||| ||| |||||||||||||  | || |||||||||| ||||||| ||| |||||| ||||||||| | || || |    
T  33279070 agtagcttgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattat 33279168  T
Q  267 tacagtccatcatccctgcacaggtt 292  Q
    ||||||||||| |||| |||| ||||    
T  33279169 tacagtccatcgtcccagcaccggtt 33279194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 281
Target Start/End: Complemental strand, 28873091 - 28872999
Alignment:
Q  189 cagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatcc 281  Q
    |||| ||||||||||||||||   |||| ||||||| || |||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttcaagatcaccttctgtttcggcaagggctttcttacagtccatcatcc 28872999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 192
Target Start/End: Original strand, 33406911 - 33407049
Alignment:
Q  53 caaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccga 152  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||  ||||||| |||||| ||||| ||||  | ||| |  | | ||||||||||     
T  33406911 caaccaactcctcgaattgctcacttctgccaacaaagtcggtttcatagttcactacaattataacactaatgcataaattgtcaat-atatgtaccgg 33407009  T
Q  153 ttcttccttcttctgctagtctcccggatttcttatcagc 192  Q
    || |||| ||  |||||||||| | |||||||||||||||    
T  33407010 tttttccatcggctgctagtcttctggatttcttatcagc 33407049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 33280357 - 33280482
Alignment:
Q  66 aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttc 165  Q
    |||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| ||||||| |||||||| || || || |||| ||||| ||||||  |    
T  33280357 aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg-taggtactgattcctccttcagc 33280455  T
Q  166 tgctagtctcccggatttcttatcagc 192  Q
    |  || ||| ||||||||||| |||||    
T  33280456 ttttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 34 - 292
Target Start/End: Complemental strand, 17447961 - 17447703
Alignment:
Q  34 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 133  Q
    ||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||  ||||| |||||||||| |||| ||| ||| ||    
T  17447961 acttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcat 17447862  T
Q  134 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagaga-ccctttttgatgagatatgcttgcggcttt 232  Q
    || || || ||||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||||| ||||||||  |||| |||||||||| ||||    
T  17447861 cgtgaatg-tatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttctgaggtatgcttgcgccttt 17447763  T
Q  233 tcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 292  Q
    |||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||| ||||    
T  17447762 tcaagatcaccttcagtttcggcaagggctttcttacagtccataatcccagcaccggtt 17447703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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