View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9041_low_21 (Length: 296)
Name: NF9041_low_21
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9041_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 53423614 - 53423878
Alignment:
| Q |
18 |
attagcaatcgatgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaaagaaagaagtgtttgctatgtttagtgatgagtgtaaaatga |
117 |
Q |
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| T |
53423614 |
attagcaatcgatgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaaagaaagaattgtttgctatgtttagtgatgagtgtaaaatga |
53423713 |
T |
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| Q |
118 |
tatctatttatgattctatctttattttgtgtatcctttaccttgagaatattcttagagagtgttgaaggccctctagatgaaaagaatgcaaccatag |
217 |
Q |
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| T |
53423714 |
tatctatttatgattctatctttattttgtgtatcc-ttaccttgagaatattcttagagagtgttgaaggccctctagatgaaaagaatgcaaccatag |
53423812 |
T |
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| Q |
218 |
gtgcaggtttataacctacgactgtaattgttgcaagaattgttgccactgggtttcttcaaattg |
283 |
Q |
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| T |
53423813 |
gtgcaggtttataacctacgactgtaatcgttgcaagaattgttgccactggattgcttcagattg |
53423878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 53308364 - 53308434
Alignment:
| Q |
18 |
attagcaatcgatgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaaagaaagaagtgtt |
88 |
Q |
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| T |
53308364 |
attaccaatccatgatgcaagaatggcaacacctggtgctgcaatatcaggctacaaaagaaagaattgtt |
53308434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 269
Target Start/End: Complemental strand, 48374358 - 48374243
Alignment:
| Q |
154 |
tttaccttgagaatattcttagagagtgttgaaggccctctagatgaaaagaatgcaaccataggtgcaggtttataacctacgactgtaattgttgcaa |
253 |
Q |
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| T |
48374358 |
tttaccttgagaatattctttgaaagagctgaaggtcctctacttgaaaagattgccaccataggtgcaggcttataatctatgactgtgactgttggta |
48374259 |
T |
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| Q |
254 |
gaattgttgccactgg |
269 |
Q |
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| T |
48374258 |
gaattgttgctactgg |
48374243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 26095888 - 26095963
Alignment:
| Q |
155 |
ttaccttgagaatattcttagagagtgttgaaggccctctagatgaaaagaatgcaaccataggtgcaggtttata |
230 |
Q |
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| T |
26095888 |
ttaccttgagaatattctttgaaagcgatgaaggccctctacttgaaaagattgccaccataggtgcaggtttata |
26095963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 48374487 - 48374435
Alignment:
| Q |
23 |
caatcgatgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaa |
75 |
Q |
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| T |
48374487 |
caatccatgctgcaagaatggtaacacctggtgctgcaatatcaggctacaaa |
48374435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 280
Target Start/End: Original strand, 53308543 - 53308639
Alignment:
| Q |
184 |
gaaggccctctagatgaaaagaatgcaaccataggtgcaggtttataacctacgactgtaattgttgcaagaattgttgccactgggtttcttcaaa |
280 |
Q |
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| T |
53308543 |
gaaggccctctacttgaaaaggttgccaccataggtgcaggcttataatctatgattgtaactgttggtagaattgttgccaccggattgcttcaaa |
53308639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 53431280 - 53431339
Alignment:
| Q |
29 |
atgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaaagaaagaagtgtt |
88 |
Q |
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| T |
53431280 |
atgctgcaagaatgttaacacctggtgctgcgatatcgggctaacaaaaaaagaattgtt |
53431339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 26095761 - 26095806
Alignment:
| Q |
30 |
tgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaa |
75 |
Q |
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| T |
26095761 |
tgctgcaacaatgttaacacctggtgctgcaatatcaggctacaaa |
26095806 |
T |
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