View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9041_low_24 (Length: 265)
Name: NF9041_low_24
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9041_low_24 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 89 - 265
Target Start/End: Original strand, 25852927 - 25853103
Alignment:
| Q |
89 |
gccctcttttgtaccaaaaataataaagaataaactgatggcaagcataacatggaccctgaaaatatgtaatatttcatagattaaggcttaactcaac |
188 |
Q |
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| T |
25852927 |
gccctcttttgtaccaaaaataataaagaataaactgatggcaagcataacatggaccctaaaaatatgtaatatttcatagattaaggtttaactcaac |
25853026 |
T |
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| Q |
189 |
cccacaaaactagtttataaggtgaccaatgcccaataattataagcattacttaggccttatttctaagctatttc |
265 |
Q |
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| T |
25853027 |
cccacaaaactagtttataaggtgacaaatgcctaataattataagcattacttaggccttatttctaggctatttc |
25853103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 264
Target Start/End: Original strand, 25869943 - 25870165
Alignment:
| Q |
65 |
ttttgtagtttttcctt--gcattcggccctcttttgtaccaaaaataataaagaataaactgatggcaagcataacatggaccctgaaaatatgtaata |
162 |
Q |
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| T |
25869943 |
ttttgtagttttttctttggaatttggccctcttttgtaccaaaaagaaaaaagaataaactgaagacaagcataacatggactctgaaaatatgtaata |
25870042 |
T |
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| Q |
163 |
t--------------ttcataga--------ttaaggcttaactcaaccccacaaaactagtttataaggtgaccaatgcccaataattataagcattac |
240 |
Q |
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| T |
25870043 |
tttcacatttacaaattcatagaatttgaaattatggcttaactcaaccacacaaaactagtttgtaaggtga-gaatgtccactaattataagcattac |
25870141 |
T |
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| Q |
241 |
ttaggccttatttctaagctattt |
264 |
Q |
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| T |
25870142 |
tttggccttatttctaggctattt |
25870165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 25850978 - 25851024
Alignment:
| Q |
17 |
aaatacatatcttggtgtcagacatgttctgatacggagacatgata |
63 |
Q |
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| T |
25850978 |
aaatacatatcttggtgtcagacatgttctgatacggagacatgata |
25851024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 25852379 - 25852333
Alignment:
| Q |
17 |
aaatacatatcttggtgtcagacatgttctgatacggagacatgata |
63 |
Q |
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|||||||| | |||||||||||||||||||| ||| ||||||||||| |
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| T |
25852379 |
aaatacatgtgttggtgtcagacatgttctggtacagagacatgata |
25852333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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