View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9041_low_3 (Length: 733)
Name: NF9041_low_3
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9041_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 324 - 717
Target Start/End: Complemental strand, 51116167 - 51115773
Alignment:
| Q |
324 |
atgtgaatttataagtaattatgattaaaatcgaacattttaatttatatgacatttgtttatttattgacactcttaattact-actttgccccagcta |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
51116167 |
atgtgaatttataagtaattatgattaaaatcgaacattttaatttatatgacatttgtttatttattgacactcttaattacttactttgtcccagcta |
51116068 |
T |
|
| Q |
423 |
tgtcatctgagatcaaggtcatggagaaggttcaccctcaacaatcgatatcgttgtcttccactggtgaagttgctgaaaacagtctccgaaatgatgt |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
51116067 |
tgtcatctgagatcaaggtcatggagaaggttcaccctcaacaatcgatatcgttgtcttccaccggtgaagttgctgaagacagtctccgaaatgatgt |
51115968 |
T |
|
| Q |
523 |
gtacactgcagctgcttatggagatttggagaagctgcgtagattggtggagcaagagggttgccttgttaccgagcctgatggtttgggttactacgtg |
622 |
Q |
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| T |
51115967 |
gtacactgcggctgcttatggagatttggagaagctgcgtagattggtggagcaagagggttgcctcgttaccgagcctgatggtttgggttattacgtg |
51115868 |
T |
|
| Q |
623 |
attcagtgggctgcactcaacaaccatactgctgttgctcagtacatcatcgatcatggtggagatataaatgcaacagatcgtaatggccaaac |
717 |
Q |
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| T |
51115867 |
attcagtgggctgcactcaacaaccatactgctgttgctcagtacatcatcgatcatggtggagatataaacgcaacagatcgtaatggccaaac |
51115773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 486 - 712
Target Start/End: Complemental strand, 51106668 - 51106442
Alignment:
| Q |
486 |
ctggtgaagttgctgaaaacagtctccgaaatgatgtgtacactgcagctgcttatggagatttggagaagctgcgtagattggtggagcaagagggttg |
585 |
Q |
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| T |
51106668 |
ctggtggagtcgctgaagacagactccagaaggatgtttacattgcgactgcttatgaggatttagagaagctacgtagattggtggagcaagagggttg |
51106569 |
T |
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| Q |
586 |
ccttgttaccgagcctgatggtttgggttactacgtgattcagtgggctgcactcaacaaccatactgctgttgctcagtacatcatcgatcatggtgga |
685 |
Q |
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| T |
51106568 |
cctcgttaccgagcctgatgctacgggttactacgcgcttcagtgggctgcactcaacaaccaaacttctgttgctaagtacatcattgatcatggtgga |
51106469 |
T |
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| Q |
686 |
gatataaatgcaacagatcgtaatggc |
712 |
Q |
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| T |
51106468 |
gatataaatgcaaaagatcgtagtggc |
51106442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 51116267 - 51116197
Alignment:
| Q |
15 |
cgtgttggatgatggtaaacctataacagtgcattttcgttaaacttgg-ttaggttgcttactttcgcta |
84 |
Q |
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| T |
51116267 |
cgtggtggatgatggtaaacctataacagtgcattttcgttaaacttggtttaggttgcttactttcgcta |
51116197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 51106835 - 51106777
Alignment:
| Q |
321 |
tatatgtgaatttataagtaattatgattaaaatcgaacattttaatttatatgacatt |
379 |
Q |
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|||||||||||||| ||||||||||||||||| || |||||||||||| ||||| |||| |
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| T |
51106835 |
tatatgtgaatttagaagtaattatgattaaagtcaaacattttaattgatatgtcatt |
51106777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 521 - 669
Target Start/End: Original strand, 48032818 - 48032966
Alignment:
| Q |
521 |
gtgtacactgcagctgcttatggagatttggagaagctgcgtagattggtggagcaagagggttgccttgttaccgagcctgatggtttgggttactacg |
620 |
Q |
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| T |
48032818 |
gtgtacactgccgcggcttatggggatttggagaagctacatagattggtggagattgaaggttgtcttgttaacgagcctgatggtttgggttactacg |
48032917 |
T |
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| Q |
621 |
tgattcagtgggctgcactcaacaaccatactgctgttgctcagtacat |
669 |
Q |
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||||||||||||| || || |||| ||||||| |||||||||||| |
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| T |
48032918 |
ctcttcagtgggctgctcttaataaccgcactgctgctgctcagtacat |
48032966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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