View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9041_low_4 (Length: 671)

Name: NF9041_low_4
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9041_low_4
NF9041_low_4
[»] chr3 (17 HSPs)
chr3 (18-669)||(1072371-1073031)
chr3 (18-277)||(1088032-1088292)
chr3 (18-201)||(1047558-1047744)
chr3 (18-178)||(1104585-1104748)
chr3 (398-535)||(9505157-9505294)
chr3 (458-548)||(41609842-41609932)
chr3 (398-545)||(52934769-52934916)
chr3 (361-552)||(54393442-54393633)
chr3 (487-538)||(33896794-33896845)
chr3 (398-537)||(44574491-44574630)
chr3 (466-552)||(28700947-28701033)
chr3 (458-524)||(32689147-32689213)
chr3 (406-552)||(39135304-39135450)
chr3 (406-552)||(39469575-39469721)
chr3 (440-538)||(52199353-52199451)
chr3 (406-534)||(30662175-30662303)
chr3 (449-552)||(39942887-39942990)
[»] chr4 (19 HSPs)
chr4 (362-552)||(15697083-15697273)
chr4 (406-528)||(24550051-24550174)
chr4 (361-545)||(11055225-11055409)
chr4 (460-528)||(38493075-38493143)
chr4 (398-528)||(19455194-19455324)
chr4 (458-548)||(19852932-19853022)
chr4 (458-548)||(21441535-21441625)
chr4 (458-552)||(50147014-50147108)
chr4 (458-548)||(53369642-53369732)
chr4 (458-548)||(53369826-53369916)
chr4 (467-534)||(22721296-22721363)
chr4 (429-552)||(25608730-25608853)
chr4 (466-552)||(16742429-16742515)
chr4 (466-548)||(44791347-44791429)
chr4 (466-548)||(49820936-49821018)
chr4 (458-524)||(50605986-50606052)
chr4 (362-483)||(13455720-13455841)
chr4 (398-483)||(51995097-51995182)
chr4 (398-526)||(49405671-49405799)
[»] chr1 (21 HSPs)
chr1 (362-552)||(7016075-7016265)
chr1 (458-548)||(36419055-36419145)
chr1 (413-552)||(25124936-25125075)
chr1 (362-477)||(45581008-45581123)
chr1 (368-432)||(572422-572486)
chr1 (408-552)||(20349096-20349240)
chr1 (368-528)||(31816542-31816702)
chr1 (368-431)||(14796659-14796722)
chr1 (368-431)||(14805533-14805596)
chr1 (398-545)||(15306450-15306597)
chr1 (362-432)||(7996041-7996111)
chr1 (458-548)||(24469913-24470003)
chr1 (458-548)||(32179812-32179902)
chr1 (406-552)||(46264988-46265134)
chr1 (458-548)||(47602958-47603048)
chr1 (406-552)||(35810668-35810814)
chr1 (406-549)||(42916158-42916301)
chr1 (466-512)||(27539882-27539928)
chr1 (458-524)||(37441282-37441348)
chr1 (411-552)||(7596343-7596484)
chr1 (416-552)||(42937024-42937160)
[»] chr7 (18 HSPs)
chr7 (406-552)||(45176200-45176346)
chr7 (458-552)||(3942131-3942225)
chr7 (458-548)||(5776226-5776316)
chr7 (458-548)||(42072042-42072132)
chr7 (361-548)||(43052831-43053018)
chr7 (406-552)||(27231583-27231729)
chr7 (404-538)||(33935477-33935611)
chr7 (458-548)||(48505884-48505974)
chr7 (361-552)||(11595795-11595986)
chr7 (458-548)||(3930812-3930902)
chr7 (458-548)||(5795032-5795122)
chr7 (470-552)||(20400951-20401033)
chr7 (398-432)||(21760619-21760653)
chr7 (458-548)||(26216231-26216321)
chr7 (494-552)||(40480183-40480241)
chr7 (467-548)||(28949863-28949944)
chr7 (458-535)||(37334250-37334327)
chr7 (385-526)||(45055709-45055850)
[»] chr6 (8 HSPs)
chr6 (404-538)||(6999231-6999365)
chr6 (458-548)||(10346675-10346765)
chr6 (460-548)||(21298867-21298955)
chr6 (487-545)||(3901538-3901596)
chr6 (411-552)||(10961845-10961986)
chr6 (398-534)||(3081754-3081890)
chr6 (361-475)||(17441185-17441299)
chr6 (459-552)||(11460103-11460196)
[»] chr5 (7 HSPs)
chr5 (362-552)||(31620818-31621008)
chr5 (361-552)||(41783275-41783466)
chr5 (398-552)||(14500742-14500896)
chr5 (355-552)||(3801357-3801554)
chr5 (423-528)||(1840748-1840853)
chr5 (75-116)||(28427114-28427155)
chr5 (362-475)||(32945021-32945134)
[»] chr8 (5 HSPs)
chr8 (385-552)||(34654985-34655152)
chr8 (458-548)||(11161526-11161616)
chr8 (411-552)||(34516088-34516229)
chr8 (403-513)||(9135941-9136051)
chr8 (385-463)||(10656116-10656194)
[»] chr2 (13 HSPs)
chr2 (458-548)||(34064659-34064749)
chr2 (458-548)||(36538610-36538700)
chr2 (458-535)||(33831462-33831539)
chr2 (460-548)||(26436308-26436396)
chr2 (398-545)||(3409224-3409371)
chr2 (414-552)||(34116225-34116363)
chr2 (494-552)||(18667701-18667759)
chr2 (458-548)||(27634625-27634715)
chr2 (458-552)||(38409667-38409761)
chr2 (494-552)||(39690120-39690178)
chr2 (403-528)||(2647015-2647140)
chr2 (398-483)||(41332250-41332335)
chr2 (460-552)||(40680171-40680263)
[»] scaffold0260 (1 HSPs)
scaffold0260 (408-552)||(11419-11563)
[»] scaffold0316 (1 HSPs)
scaffold0316 (458-548)||(19250-19340)
[»] scaffold0224 (1 HSPs)
scaffold0224 (406-549)||(7352-7495)
[»] scaffold0223 (1 HSPs)
scaffold0223 (361-528)||(14400-14567)
[»] scaffold0171 (1 HSPs)
scaffold0171 (362-432)||(21157-21227)
[»] scaffold0022 (1 HSPs)
scaffold0022 (398-535)||(124517-124654)


Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 669
Target Start/End: Original strand, 1072371 - 1073031
Alignment:
Q  18 aaatgcttggaagattgttcttgcatggcttattcaaacttaaatgtgagtgatggtagtggttgttccatatggtttggtgatcttatagacttaagac 117  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1072371 aaatgcttggaagattgttcttgtatggcttattcaaacttaaatgtgagtgatggtagtggatgttccatatggtttggtgatcttatagacttaagac 1072470  T
Q  118 agattttaacattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttatgcnnnnnnnatggatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  1072471 agattttaacattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttatgctttttttatggatt 1072570  T
Q  218 atatatgtttttaatctctagctatatagttttagttaatactaaatttgtttagctaaggttttaattaatacactacaaaaacaccataattttcctc 317  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||| |||    
T  1072571 atatatatttttaatctctagctatatagttttagttaatactaaatttgtttgcctaa-gttttaattaatacactacaaaaacaccataatttttctc 1072669  T
Q  318 gagccactattggcagcctctagaccctcgaagataccggtggctagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataa 417  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||     ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1072670 gagccactattgccagcctctagaccctcgaaaatactggtggc-----ttgacaataaaccgagcgaacttgaacaaattttgaaactcgactcgataa 1072764  T
Q  418 ttgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcg 517  Q
    ||||||||||| ||||| ||||| || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1072765 ttgattcgttggactaagttcatgaaccaaatgagttgagtttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatagttcg 1072864  T
Q  518 gctcgtttggtccatgagttgattcgatt----------------atatattttttattaaatagtatgaacatgaacgtagggttaaattaatcaatta 601  Q
     ||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1072865 cctcgtttggtccatgagttgattcgattatatattttttataaaatatattttttattaaatagtatgaacatgaacgtagggtcaaattaatcaatta 1072964  T
Q  602 aatttaaaagttgttgcacaatactaagtcaactaagaggtttctgaagtggaacaagactactctaa 669  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  1072965 aatttaaaagttgttgcacagtactaagtcaactaagaggtttc-gaagtggaacaagactactctaa 1073031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 1088032 - 1088292
Alignment:
Q  18 aaatgcttggaagattgttcttgcatggcttattcaaacttaaatgtgagtg---atggtagtggttgttccatatggtttggtgatcttatagacttaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||  ||   |||||||||||||||| |||||||||||||||||||||||||| |    
T  1088032 aaatgcttggaagattgttcttgcatggcttattcaaacttggatgtggctggagatggtagtggttgttctatatggtttggtgatcttatagacttga 1088131  T
Q  115 gacagattttaacattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttatgcnnnnnnnatgg 214  Q
     |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||       ||||    
T  1088132 aacagatttcatcattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatgctatgttcttctcacacatttatgcattttttatgg 1088231  T
Q  215 attatatatgtttttaatctctagctatatagttttagttaatactaaatttgtttagctaag 277  Q
    ||||||||||  | || ||| || |||||| |||||||| |||  | |||||||||| |||||    
T  1088232 attatatatg--tctagtctttaactatatggttttagtaaatgattaatttgtttacctaag 1088292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 1047558 - 1047744
Alignment:
Q  18 aaatgcttggaagattgttcttgcatggcttattcaaacttaaatgtgagtg---atggtagtggttgttccatatggtttggtgatcttatagacttaa 114  Q
    |||||||||||| ||||||||||||||||||||||||||||  |||||  ||   |||| ||||||||||| |||||||||||||||||||| ||||| |    
T  1047558 aaatgcttggaaaattgttcttgcatggcttattcaaacttggatgtggctggagatggcagtggttgttctatatggtttggtgatcttattgacttga 1047657  T
Q  115 gacagattttaacattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttat 201  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1047658 aacagatcttaacattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatgctatgttcttctcaaacatttat 1047744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 1104585 - 1104748
Alignment:
Q  18 aaatgcttggaagattgttcttgcatggcttattcaaacttaaatgt---gagtgatggtagtggttgttccatatggtttggtgatcttatagacttaa 114  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||   | | ||||||||||||||||| |||||||||||||||||||| |  || |    
T  1104585 aaatgcttggaaaattgttcttgcatggcttattcaaacttagatgttaggggagatggtagtggttgttctatatggtttggtgatcttatcggtttga 1104684  T
Q  115 gacagattttaacattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatg 178  Q
     |||  ||| | || | |||||| |||| ||| |||||||||||||||||||||||||||||||    
T  1104685 aacaagtttcatcagttcaacaagatctttatgttcgaatggatgcttccacagtaggtaaatg 1104748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 398 - 535
Target Start/End: Original strand, 9505157 - 9505294
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaa 497  Q
    |||| ||||||| |||| |||| | ||||||||||   ||||| || ||| |||||||| ||||||| |||||||||||| |||||   ||||| |||||    
T  9505157 ttcggaactcgattcgacaattaactcgttgaacttggttcatgaaccaaatgagttgaacttgagctgaaaattaagttcgttaaataaatgagctgaa 9505256  T
Q  498 cttgagttatatatatttcggctcgtttggtccatgag 535  Q
    |||||| |||||||| ||||| ||| ||||| ||||||    
T  9505257 cttgagatatatatagttcggttcggttggttcatgag 9505294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 41609932 - 41609842
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||| ||||||||    
T  41609932 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttgggttcatgagatgactcgattat 41609842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 545
Target Start/End: Complemental strand, 52934916 - 52934769
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaa 497  Q
    |||| ||||||| ||||||||| | || |||||||   ||||| || ||| |||| ||| ||||||| |||||||||||| |||||   ||||| | |||    
T  52934916 ttcggaactcgattcgataattaactcattgaacttggttcatgaaccaaatgagctgaacttgagcagaaaattaagttcgttaaataaatgagccgaa 52934817  T
Q  498 cttgagttatatatatttcggctcgtttggtccatgagttgattcgat 545  Q
    |||||  |||||||| |||| |||| ||||| |||||| ||| |||||    
T  52934816 cttgatctatatatagttcgactcgattggttcatgagctgactcgat 52934769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 552
Target Start/End: Original strand, 54393442 - 54393633
Alignment:
Q  361 ctagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagctt 460  Q
    |||||| || |||| |||||| | |||| ||  ||| |||| || |||| |||| |||||||||||||||||   ||||| || ||| ||||  || |||    
T  54393442 ctagggctggcaatgaaccgaaccaactcgattaaagttcgtaattcgattcgacaattgattcgttgaacttggttcataaaccaaatgagccgaactt 54393541  T
Q  461 gagccgaaaattaagtttgttaatataa-tgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    |||| |||||||||||| || || |||| ||| | ||||||||  ||||| || |||| |||||||||| || ||| ||| ||||||||||||    
T  54393542 gagctgaaaattaagttcgtcaa-ataattgagccgaacttgaactatatgtagttcgactcgtttggttcacgagatgactcgattatatat 54393633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 538
Target Start/End: Complemental strand, 33896845 - 33896794
Alignment:
Q  487 aatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttg 538  Q
    ||||| |||||||||||||||||||| |||| ||||||| || |||||||||    
T  33896845 aatgagctgaacttgagttatatatagttcgactcgtttagttcatgagttg 33896794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 537
Target Start/End: Complemental strand, 44574630 - 44574491
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaa 497  Q
    |||||| |||||||||  |||| |||||||||||| | ||| | || | | |||| ||| ||||||   ||||| ||||| ||| ||  ||||| | |||    
T  44574630 ttcgaagctcgactcggcaattaattcgttgaacttagttcgtgaacctaatgagctgaacttgagttaaaaatcaagttcgtttattaaatgagccgaa 44574531  T
Q  498 cttgagttatatatatttcggctcgtttggtccatgagtt 537  Q
    |||||| || ||||| ||||||||||||||| ||||||||    
T  44574530 cttgagctacatatagttcggctcgtttggttcatgagtt 44574491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 552
Target Start/End: Complemental strand, 28701033 - 28700947
Alignment:
Q  466 gaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||||||| || ||||| | |||||  |||||||||||||||| || |||| |||| ||| | |||||||||| ||||| ||||||    
T  28701033 gaaaattaaattcgttaaaaaaatgagttgaacttgagttatatctagttcgactcggttgattcatgagttgactcgataatatat 28700947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 524
Target Start/End: Complemental strand, 32689213 - 32689147
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtt 524  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| ||||||    
T  32689213 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgtt 32689147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 552
Target Start/End: Complemental strand, 39135450 - 39135304
Alignment:
Q  406 tcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagtt 505  Q
    ||||||||| ||||| ||| |||||||   ||||| || ||| ||||  || ||||||| |||||||||||| ||||||  ||||| |||||||| |  |    
T  39135450 tcgactcgacaattggttcattgaacttggttcatgaaccaaatgagccgaacttgagctgaaaattaagttcgttaattaaatgagctgaacttaaact 39135351  T
Q  506 atatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||| ||  ||||  ||||| ||| |||||| ||| ||||||||||||    
T  39135350 atagatggttcgattcgttaggttcatgagatgactcgattatatat 39135304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 552
Target Start/End: Original strand, 39469575 - 39469721
Alignment:
Q  406 tcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagtt 505  Q
    |||| |||||||||| | | |||||||   ||||| |||||| ||||  || ||||||| |||||||||||| ||||||  ||||| || ||||||| ||    
T  39469575 tcgattcgataattggtccattgaacttggttcatgaatcaaatgagccgaacttgagctgaaaattaagttcgttaattaaatgagctaaacttgaatt 39469674  T
Q  506 atatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||| ||  ||||  ||||| ||| |||||| ||| | ||||||||||    
T  39469675 atagattgttcgattcgttaggttcatgagatgactagattatatat 39469721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 538
Target Start/End: Complemental strand, 52199451 - 52199353
Alignment:
Q  440 ttaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttg 538  Q
    |||| ||| |||| ||| ||||||| |||||||||||| |||||   ||||| ||||||||||| | |||||| |||| |||  ||||| |||||||||    
T  52199451 ttaaacaaatgagctgaacttgagctgaaaattaagttcgttaaacaaatgagctgaacttgagctttatatagttcgactcagttggttcatgagttg 52199353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 534
Target Start/End: Original strand, 30662175 - 30662303
Alignment:
Q  406 tcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagtt 505  Q
    |||| ||||||||||| ||||||||||   ||||| |||||| ||||| || ||||||  |||||||||| | |||||   |||||   |||||||||||    
T  30662175 tcgattcgataattgactcgttgaacttggttcatgaatcaaatgagtcgaacttgagttgaaaattaagctcgttaaataaatgagtcgaacttgagtt 30662274  T
Q  506 atatatatttcggctcgtttggtccatga 534  Q
       |||| |||| |||||||||| |||||    
T  30662275 gagtatagttcgactcgtttggttcatga 30662303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 449 - 552
Target Start/End: Original strand, 39942887 - 39942990
Alignment:
Q  449 tgagttgagcttgagccgaaaattaagtttgttaatata-atgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgatta 547  Q
    |||| ||| ||||||| |||||||||||| ||||| ||| |||| |||||||||||||||| ||   ||| ||||||||||  |||||||   |||||||    
T  39942887 tgagctgaacttgagctgaaaattaagttcgttaa-atagatgagctgaacttgagttatagatggctcgactcgtttggtttatgagttagctcgatta 39942985  T
Q  548 tatat 552  Q
    |||||    
T  39942986 tatat 39942990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 362 - 552
Target Start/End: Original strand, 15697083 - 15697273
Alignment:
Q  362 tagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttg 461  Q
    ||||| ||||||| |||||||  |||| ||| ||| ||||| ||||||||||| |||||||||||||||||  |||||| || ||| | || ||| ||||    
T  15697083 tagggctgacaatgaaccgagacaactcgaataaagttcgagactcgactcgacaattgattcgttgaacttgattcatgaaccaaataagctgaacttg 15697182  T
Q  462 agccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    |||  ||||||||||| |||||  |||||| |||||| |||  || | ||| | || |||||||||| |||||||||||||||||||||||    
T  15697183 agctaaaaattaagttcgttaacttaatgagctgaacatgaactaaacatagtccgactcgtttggttcatgagttgattcgattatatat 15697273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 406 - 528
Target Start/End: Complemental strand, 24550174 - 24550051
Alignment:
Q  406 tcgactcgataattgattcgttgaactaaattc-attaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagt 504  Q
    |||||||| ||||||||||||||||||  |||  || || ||| |||||||| |||||||  |||||||||||||||||   |||||  |||||||||||    
T  24550174 tcgactcggtaattgattcgttgaacttgattttataaaccaactgagttgaacttgagctaaaaattaagtttgttaactaaatgagttgaacttgagt 24550075  T
Q  505 tatatatatttcggctcgtttggt 528  Q
    ||| ||||  ||| ||||||||||    
T  24550074 tatgtatagctcgactcgtttggt 24550051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 545
Target Start/End: Original strand, 11055225 - 11055409
Alignment:
Q  361 ctagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagctt 460  Q
    |||||| ||||||| |||||| | |||| ||  | | |||| ||||||| ||||||||| | || |||||||   ||||| || ||| |||| ||| |||    
T  11055225 ctagggctgacaatgaaccgaaccaactcgacaatagttcggaactcgattcgataattaactcattgaacttggttcatgaaccaaatgagctgaactt 11055324  T
Q  461 gagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgat 545  Q
    |||| |||||||||||| |||||   ||||| | ||||||||| | |||||| |||| |||| ||||| |||||| ||| |||||    
T  11055325 gagcggaaaattaagttcgttaaataaatgagccgaacttgagctgtatatagttcgactcgattggttcatgagctgactcgat 11055409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 460 - 528
Target Start/End: Original strand, 38493075 - 38493143
Alignment:
Q  460 tgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggt 528  Q
    ||||| |||||||||||||||||||  |||||  ||||||||||||||||||| || | ||||||||||    
T  38493075 tgagctgaaaattaagtttgttaattaaatgagttgaacttgagttatatataatttgactcgtttggt 38493143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 528
Target Start/End: Original strand, 19455194 - 19455324
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaa 497  Q
    |||||||||||| | || |||| ||||||||||||   ||||| |||||| |||| ||| ||||||  |||||||||||||||||    |||||  ||||    
T  19455194 ttcgaaactcgatttgacaattaattcgttgaacttggttcatgaatcaaatgagctgaacttgagttgaaaattaagtttgttatctaaatgagttgaa 19455293  T
Q  498 cttgagttatatatatttcggctcgtttggt 528  Q
    |||||| |||||| | |||| || |||||||    
T  19455294 cttgagctatatacagttcgacttgtttggt 19455324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 19853022 - 19852932
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||  ||||||||    
T  19853022 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattat 19852932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 21441625 - 21441535
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||  ||||||||    
T  21441625 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattat 21441535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 50147014 - 50147108
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||||| |||||||||||| || ||   | ||| |||||||| |||||||| || ||||||||||||||| || ||| ||| ||||||||||||    
T  50147014 cttgagctgaaaattaagttcgtgaactaattgagctgaacttaagttatatgtagttcggctcgtttggttcacgagatgactcgattatatat 50147108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 53369732 - 53369642
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||  ||||||||    
T  53369732 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattat 53369642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 53369916 - 53369826
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||  ||||||||    
T  53369916 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattat 53369826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 534
Target Start/End: Complemental strand, 22721363 - 22721296
Alignment:
Q  467 aaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatga 534  Q
    ||||||||||| |||||   |||||  ||||||||||||||||||| |||| |||||||||| |||||    
T  22721363 aaaattaagttcgttaaataaatgagttgaacttgagttatatatagttcgactcgtttggttcatga 22721296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 552
Target Start/End: Complemental strand, 25608853 - 25608730
Alignment:
Q  429 aactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggt 528  Q
    |||| |||||||||||||| |||||| |  |||||| ||||||||||||  |||||  |||  | ||||||||| ||||||||| ||||  | ||||| |    
T  25608853 aacttaattcattaatcaaatgagtttaatttgagctgaaaattaagttcattaattaaatagattgaacttgaattatatataattcgatttgtttgtt 25608754  T
Q  529 ccatgagttgattcgattatatat 552  Q
     ||| |||||| || |||||||||    
T  25608753 tcattagttgactctattatatat 25608730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 552
Target Start/End: Original strand, 16742429 - 16742515
Alignment:
Q  466 gaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    |||||||||||| |||||   ||||| ||||||||||||| |||||| ||||  ||| ||||| |||||| ||| ||||| ||||||    
T  16742429 gaaaattaagttcgttaaataaatgagctgaacttgagttgtatatagttcgattcgattggttcatgagctgactcgataatatat 16742515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 548
Target Start/End: Original strand, 44791347 - 44791429
Alignment:
Q  466 gaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    |||||||||||| ||||||  ||||| ||||| ||||| || ||||| |||| |||||| ||| |||||| ||| ||||||||    
T  44791347 gaaaattaagttcgttaattaaatgagctgaatttgagctacatatagttcgactcgttaggttcatgagatgactcgattat 44791429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 548
Target Start/End: Complemental strand, 49821018 - 49820936
Alignment:
Q  466 gaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||  ||||||||    
T  49821018 gaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattat 49820936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 524
Target Start/End: Complemental strand, 50606052 - 50605986
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtt 524  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| ||||||    
T  50606052 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgtt 50605986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 483
Target Start/End: Complemental strand, 13455841 - 13455720
Alignment:
Q  362 tagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttg 461  Q
    ||||| |||||||||||||| | |||||||| | | || || | |||| ||||||||| ||||||||||||  ||| || || ||| |||||  | ||||    
T  13455841 tagggctgacaataaaccgaaccaacttgaaaataatttgagattcgattcgataattaattcgttgaacttgatttatgaaccaaatgagtccaacttg 13455742  T
Q  462 agccgaaaattaagtttgttaa 483  Q
    |||  ||||||||||| |||||    
T  13455741 agctcaaaattaagttcgttaa 13455720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 51995182 - 51995097
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaa 483  Q
    ||||| |||||| ||||||||| ||||||||||||   ||||| || ||| ||||  || |||||||  |||||||||||||||||    
T  51995182 ttcgagactcgattcgataattaattcgttgaacttggttcatgaaccaaatgagccgaacttgagctcaaaattaagtttgttaa 51995097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 526
Target Start/End: Original strand, 49405671 - 49405799
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaa 497  Q
    |||||||||||| ||| ||||||||||||||||||   || || || ||| ||||| || |||||  ||||||||||| | || ||   ||||| | |||    
T  49405671 ttcgaaactcgattcggtaattgattcgttgaacttggtttatgaaccaaatgagtcgaacttgaatcgaaaattaagctcgtcaaataaatgagccgaa 49405770  T
Q  498 cttgagttatatatatttcggctcgtttg 526  Q
    ||||||||||  ||| |||| ||||||||    
T  49405771 cttgagttatggatagttcgactcgtttg 49405799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 362 - 552
Target Start/End: Original strand, 7016075 - 7016265
Alignment:
Q  362 tagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttg 461  Q
    ||||| ||||||| |||||| | |||| ||||||| ||||| |||||| |||| |||||||| ||||||||   ||||| || ||| |||| ||| ||||    
T  7016075 tagggctgacaatgaaccgaaccaactcgaacaaaattcgagactcgattcgacaattgatttgttgaacttggttcatgaaccaaatgagctgaacttg 7016174  T
Q  462 agccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    |||  |||| ||||||||||||  |||| | |||| |||||| ||||||   |||| |||||||||  ||||||  || ||||||||||||    
T  7016175 agctcaaaactaagtttgttaacctaataagctgagcttgagctatatacggttcgactcgtttgggtcatgagacgactcgattatatat 7016265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 36419145 - 36419055
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    |||||||||||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||| ||||||||    
T  36419145 cttgagccgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatgactcgattat 36419055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 552
Target Start/End: Original strand, 25124936 - 25125075
Alignment:
Q  413 gataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatata 512  Q
    ||||||||||||||||||||   ||||| || ||| ||||  || ||||||| ||||||||| || || ||   | ||| ||||||||||| ||||| ||    
T  25124936 gataattgattcgttgaacttggttcatgaaccaaatgagccgaacttgagctgaaaattaatttcgtgaactaattgagctgaacttgagctatatgta 25125035  T
Q  513 tttcggctcgtttggtccatgagttgattcgattatatat 552  Q
     ||| ||||||||||| || ||| ||||||||||||||||    
T  25125036 gttcagctcgtttggttcacgagatgattcgattatatat 25125075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 362 - 477
Target Start/End: Original strand, 45581008 - 45581123
Alignment:
Q  362 tagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttg 461  Q
    ||||| ||||||| |||||| | |||||||| | | |||||||||||| |||||||||   ||||||||||   ||||| || ||| |||||||| ||||    
T  45581008 tagggctgacaatgaaccgaaccaacttgaaaatagttcgaaactcgattcgataattatctcgttgaacttggttcatgaaccaaatgagttgaacttg 45581107  T
Q  462 agccgaaaattaagtt 477  Q
    ||| ||||||||||||    
T  45581108 agcggaaaattaagtt 45581123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 432
Target Start/End: Original strand, 572422 - 572486
Alignment:
Q  368 tgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaact 432  Q
    ||||||| || ||||| |||| ||||||| ||||| |||||||||||||||||||| ||||||||    
T  572422 tgacaatgaatcgagcaaactcgaacaaagttcgagactcgactcgataattgatttgttgaact 572486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 552
Target Start/End: Complemental strand, 20349240 - 20349096
Alignment:
Q  408 gactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagttat 507  Q
    |||||||||||| ||||||||||||  ||||||  | ||| ||||  || ||| ||  |||||||||||| ||||||  ||||| ||||| ||||  |||    
T  20349240 gactcgataattaattcgttgaacttgattcatataccaaatgagccgaacttcagatgaaaattaagttcgttaattaaatgagctgaatttgaactat 20349141  T
Q  508 atatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||| |||| |||||||||| ||| | |||| || |||||||||    
T  20349140 atataattcgactcgtttggttcatcaattgactcaattatatat 20349096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 528
Target Start/End: Complemental strand, 31816702 - 31816542
Alignment:
Q  368 tgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccga 467  Q
    ||||||| |||||| | |||| ||| | | |||||||||| | ||| ||||||||||||||||||   ||||| || ||| |||||||| ||| || |||    
T  31816702 tgacaatgaaccgaaccaactcgaaaatagttcgaaactcaattcggtaattgattcgttgaacttggttcatgaaccaaatgagttgaacttcagtcga 31816603  T
Q  468 aaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggt 528  Q
    |||||||| | || ||   ||||| | |||||||||||||  ||| |||| ||||||||||    
T  31816602 aaattaagctcgtcaaataaatgagccgaacttgagttatggataattcgactcgtttggt 31816542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 431
Target Start/End: Complemental strand, 14796722 - 14796659
Alignment:
Q  368 tgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaac 431  Q
    |||||||||||||||| |||| || |||| |||| |||| |||||||||||| |||||||||||    
T  14796722 tgacaataaaccgagctaactcgatcaaagttcggaacttgactcgataattaattcgttgaac 14796659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 431
Target Start/End: Complemental strand, 14805596 - 14805533
Alignment:
Q  368 tgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaac 431  Q
    |||||||||||||||| |||| || |||| |||| |||| |||||||||||| |||||||||||    
T  14805596 tgacaataaaccgagctaactcgatcaaagttcggaacttgactcgataattaattcgttgaac 14805533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 545
Target Start/End: Complemental strand, 15306597 - 15306450
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaa 497  Q
    |||| ||||||| ||||||||| |||| |||||||   ||||| || ||| |||| ||| ||||||| ||||||||||||  ||||   ||||| | |||    
T  15306597 ttcggaactcgattcgataattaattcattgaacttggttcatgaaccaaatgagctgaacttgagcggaaaattaagttcattaaataaatgagccgaa 15306498  T
Q  498 cttgagttatatatatttcggctcgtttggtccatgagttgattcgat 545  Q
    |||||| | |||||| |||| |||| ||||| |||||| ||| |||||    
T  15306497 cttgagctgtatatagttcgactcgattggttcatgagctgactcgat 15306450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 432
Target Start/End: Complemental strand, 7996111 - 7996041
Alignment:
Q  362 tagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaact 432  Q
    ||||||||||||| |||||| | |||||||| | | ||||| | |||| ||||||||||||||||||||||    
T  7996111 tagggttgacaatgaaccgaaccaacttgaaaatagttcgagattcgattcgataattgattcgttgaact 7996041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 24469913 - 24470003
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||  ||||||||    
T  24469913 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattat 24470003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 32179902 - 32179812
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||| || |||||    
T  32179902 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttcggttcatgagatgactcaattat 32179812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 552
Target Start/End: Original strand, 46264988 - 46265134
Alignment:
Q  406 tcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagtt 505  Q
    |||| |||||||||||||||| |||||   ||||| ||  || ||||  || ||||||| |||||||||||| | |||   | ||| ||||||||||  |    
T  46264988 tcgattcgataattgattcgtcgaacttggttcatgaactaaatgagccgaacttgagctgaaaattaagttcgctaactaattgagctgaacttgaact 46265087  T
Q  506 atatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    |||||||  ||| |||||||||| |||||| ||| ||||||||||||    
T  46265088 atatataggtcgactcgtttggttcatgagatgactcgattatatat 46265134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 47602958 - 47603048
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||  ||||||||    
T  47602958 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattat 47603048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 552
Target Start/End: Complemental strand, 35810814 - 35810668
Alignment:
Q  406 tcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataa-tgaactgaacttgagt 504  Q
    |||| |||| |||||||||||||||||   ||||| || ||| ||||  || ||||||| |||||||||||| || || |||| ||| | ||||||||      
T  35810814 tcgattcgacaattgattcgttgaacttggttcatgaaccaaatgagccgaacttgagctgaaaattaagttcgtcaa-ataattgagccgaacttgaac 35810716  T
Q  505 tatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||| || |||| |||||||||| || ||| ||| ||||||||||||    
T  35810715 tatatgtagttcgactcgtttggttcacgagatgactcgattatatat 35810668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 549
Target Start/End: Original strand, 42916158 - 42916301
Alignment:
Q  406 tcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagtt 505  Q
    |||| |||||||||||||||| |||||   ||||| || ||| ||||  || ||||||| |||||||||||| | |||   | ||| ||||||||||       
T  42916158 tcgattcgataattgattcgtcgaacttggttcatgaaccaaatgagccgaacttgagctgaaaattaagttcgctaactaattgagctgaacttgaacc 42916257  T
Q  506 atatatatttcggctcgtttggtccatgagttgattcgattata 549  Q
    |||||||  ||| |||||||||| |||||| ||| |||||||||    
T  42916258 atatataggtcgactcgtttggttcatgagatgactcgattata 42916301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 512
Target Start/End: Complemental strand, 27539928 - 27539882
Alignment:
Q  466 gaaaattaagtttgttaatataatgaactgaacttgagttatatata 512  Q
    ||||||| |||| |||||  |||||||||||||||||||||||||||    
T  27539928 gaaaattgagttcgttaacttaatgaactgaacttgagttatatata 27539882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 524
Target Start/End: Original strand, 37441282 - 37441348
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtt 524  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| ||||||    
T  37441282 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgtt 37441348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 552
Target Start/End: Complemental strand, 7596484 - 7596343
Alignment:
Q  411 tcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatata 510  Q
    |||||||||||||||| |||||   || || || ||| ||||  || ||||||| |||||||||||| | |||   | ||| ||||||||||  |||||     
T  7596484 tcgataattgattcgtcgaacttggtttatgaaccaaatgagccgaacttgagctgaaaattaagttcgctaactaattgagctgaacttgaactatatg 7596385  T
Q  511 tatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    || |||| |||||||| | |||||| ||| ||||||||||||    
T  7596384 tagttcgactcgtttgattcatgagatgactcgattatatat 7596343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 416 - 552
Target Start/End: Complemental strand, 42937160 - 42937024
Alignment:
Q  416 aattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatattt 515  Q
    ||||||||||| |||||   ||||| |||||| ||||  || |||||||  ||||||||||| || ||   | ||| ||||||||||| ||| |||| ||    
T  42937160 aattgattcgtcgaacttggttcatgaatcaaatgagccgaacttgagcttaaaattaagttcgtcaactaattgagctgaacttgagctatgtatagtt 42937061  T
Q  516 cggctcgtttggtccatgagttgattcgattatatat 552  Q
    |  |||||||||| || ||| ||| ||||||||||||    
T  42937060 caactcgtttggttcacgagatgaatcgattatatat 42937024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 406 - 552
Target Start/End: Complemental strand, 45176346 - 45176200
Alignment:
Q  406 tcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagtt 505  Q
    |||||||||||||| || |||||||||   ||||| || |||  ||| ||| ||| ||| |||||||||||| ||||||  |||||  |||||||||| |    
T  45176346 tcgactcgataattaatccgttgaacttggttcatgaaccaaacgagctgaactttagctgaaaattaagttcgttaattaaatgagttgaacttgagct 45176247  T
Q  506 atatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    | ||||| |||| |||||| ||| |||||| ||| ||||||||||||    
T  45176246 acatataattcgactcgttaggttcatgagatgactcgattatatat 45176200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 3942225 - 3942131
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||||| |||||||||||| || |||  | ||| ||||||||||| ||||| || ||||||||||||||| || ||| ||| ||||||||||||    
T  3942225 cttgagctgaaaattaagttcgtgaattaattgagctgaacttgagctatatgtagttcggctcgtttggttcacgagatgactcgattatatat 3942131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 5776226 - 5776316
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||| ||||||||    
T  5776226 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttcggttcatgagatgactcgattat 5776316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 42072132 - 42072042
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||| ||||||||    
T  42072132 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatgactcgattat 42072042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 361 - 548
Target Start/End: Complemental strand, 43053018 - 43052831
Alignment:
Q  361 ctagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagctt 460  Q
    ||||||||| |||| |||||| | |||| ||  | | ||||| | ||||||||||| || || |||||||||   ||||| || | | |||| ||  |||    
T  43053018 ctagggttggcaatgaaccgaaccaactcgattatagttcgacattcgactcgatatttaatccgttgaacttggttcatgaacctaatgagctggactt 43052919  T
Q  461 gagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||||||||||||| ||||||   |||| ||||||||||| || ||||| |||| |||||| | | |||||| ||| ||||||||    
T  43052918 gagccgaaaattaagttcgttaattagatgagctgaacttgagctacatatagttcgactcgttagattcatgagatgactcgattat 43052831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 552
Target Start/End: Original strand, 27231583 - 27231729
Alignment:
Q  406 tcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagtt 505  Q
    |||| |||||||||||||||| |||||  ||||||  ||||| ||||  || ||||| | |||||||||||| || ||   | ||||| |||||| || |    
T  27231583 tcgattcgataattgattcgtcgaacttgattcatgtatcaaatgagccgaacttgaactgaaaattaagttcgtcaactaattgaaccgaacttaagct 27231682  T
Q  506 atatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    |||| || || | |||||||||| |||||| ||| ||||||||||||    
T  27231683 atatgtagtttgactcgtttggttcatgagatgactcgattatatat 27231729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 538
Target Start/End: Complemental strand, 33935611 - 33935477
Alignment:
Q  404 actcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgag 503  Q
    |||||| ||||||||| | ||||||||||   ||||| || |||  ||| ||| ||||||| |||||||||||| |||||   |||||  ||||||||||    
T  33935611 actcgattcgataattaactcgttgaacttggttcatgaaccaaacgagctgaacttgagctgaaaattaagttcgttaaacaaatgagatgaacttgag 33935512  T
Q  504 ttatatatatttcggctcgtttggtccatgagttg 538  Q
     | |||||| |||| |||| || ||||||||||||    
T  33935511 ctttatatagttcgactcggttagtccatgagttg 33935477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 48505884 - 48505974
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||  ||||||||    
T  48505884 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggtacatgagatggctcgattat 48505974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 552
Target Start/End: Original strand, 11595795 - 11595986
Alignment:
Q  361 ctagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagctt 460  Q
    |||||| ||||||| ||||||   |||| ||| ||| |||| ||||||||||| |||||  |||||||||||   ||||| || |||  |||  || |||    
T  11595795 ctagggctgacaatgaaccgatacaactcgaataaagttcggaactcgactcggtaattagttcgttgaacttggttcatgaaccaaacgagccgaactt 11595894  T
Q  461 gagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||  || |||||||| |||||   |||||  ||| ||||||||||||||| |||| || ||||||| || ||  ||| ||||||||||||    
T  11595895 gagctaaagattaagttcgttaactaaatgagttgaccttgagttatatatagttcgacttgtttggttcacgaactgactcgattatatat 11595986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 3930812 - 3930902
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||  |||||| ||| |||||| ||  ||||||||    
T  3930812 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcaactcgttaggtacatgagatggctcgattat 3930902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 5795032 - 5795122
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||  |||||| ||| |||||| ||  ||||||||    
T  5795032 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcaactcgttaggttcatgagatggctcgattat 5795122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 552
Target Start/End: Complemental strand, 20401033 - 20400951
Alignment:
Q  470 attaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||||||  |||||  ||||| |||||||||||||| ||||| |||| ||||||||||  ||||||||  || |||||||||    
T  20401033 attaagttctttaattaaatgagctgaacttgagttacatatagttcgactcgtttggttaatgagttggctcaattatatat 20400951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 432
Target Start/End: Original strand, 21760619 - 21760653
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaact 432  Q
    |||||||||||| ||||||||||||||||||||||    
T  21760619 ttcgaaactcgattcgataattgattcgttgaact 21760653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 26216321 - 26216231
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  || || ||||||||||| || ||||| |||| |||||| ||| |||||| ||  ||||||||    
T  26216321 cttgagctgaaaattaagttcgttaattaaaggagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattat 26216231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 552
Target Start/End: Original strand, 40480183 - 40480241
Alignment:
Q  494 tgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||||||||||||||||| |||| |||||||||| || ||  ||| ||||||||||||    
T  40480183 tgaacttgagttatatatagttcgactcgtttggttcacgaactgactcgattatatat 40480241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 548
Target Start/End: Original strand, 28949863 - 28949944
Alignment:
Q  467 aaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||  ||| ||||||||    
T  28949863 aaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgaaatgactcgattat 28949944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 535
Target Start/End: Complemental strand, 37334327 - 37334250
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgag 535  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| ||| || ||| ||||||    
T  37334327 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcattaggttcatgag 37334250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 526
Target Start/End: Complemental strand, 45055850 - 45055709
Alignment:
Q  385 aacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaat 484  Q
    |||| ||| ||| |||| ||||||||||| |||||  |||||||||||   ||||| || |||  |||  || |||||||  || |||||||| |||||     
T  45055850 aactcgaataaagttcggaactcgactcggtaattagttcgttgaacttggttcatgaaccaaacgagccgaacttgagctaaagattaagttcgttaac 45055751  T
Q  485 ataatgaactgaacttgagttatatatatttcggctcgtttg 526  Q
      |||||  ||||||||||||||||||| |||| ||||||||    
T  45055750 taaatgagttgaacttgagttatatatagttcgactcgtttg 45055709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 404 - 538
Target Start/End: Complemental strand, 6999365 - 6999231
Alignment:
Q  404 actcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgag 503  Q
    |||||| ||||||||| ||||||||||||   || || ||  || |||| ||| ||||||| ||||||||||||||||||   ||||||||||||||||     
T  6999365 actcgattcgataattaattcgttgaacttggttaatgaactaaatgagctgaacttgagctgaaaattaagtttgttaaacaaatgaactgaacttgaa 6999266  T
Q  504 ttatatatatttcggctcgtttggtccatgagttg 538  Q
     | |||||| |||| |||| ||||| |||||||||    
T  6999265 ctttatatagttcgactcggttggttcatgagttg 6999231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 10346765 - 10346675
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| |||||||||||||| ||||| |||| ||||||  || |||||| ||| ||||||||    
T  10346765 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagttacatatagttcgactcgttaagttcatgagatgactcgattat 10346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 460 - 548
Target Start/End: Complemental strand, 21298955 - 21298867
Alignment:
Q  460 tgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||| |||||||||||||||||||  | ||| |||||||||||| |||||||  |||||||||||  | |||||| | ||||||||||    
T  21298955 tgagctgaaaattaagtttgttaattaactgagctgaacttgagtcatatatagctcggctcgtttaattcatgagctaattcgattat 21298867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 545
Target Start/End: Complemental strand, 3901596 - 3901538
Alignment:
Q  487 aatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgat 545  Q
    ||||| |||||||| ||||||||||| ||||| ||||||||| |||||||| |||||||    
T  3901596 aatgagctgaacttaagttatatatagttcggttcgtttggttcatgagttaattcgat 3901538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 411 - 552
Target Start/End: Original strand, 10961845 - 10961986
Alignment:
Q  411 tcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatata 510  Q
    |||| |||||||||||||||||   ||||| || ||| ||||| ||  |||||| |||||||||||| || ||   | ||| ||||||||||  |||||     
T  10961845 tcgacaattgattcgttgaacttggttcatgaaccaaatgagtcgaatttgagctgaaaattaagttcgtcaactaattgagctgaacttgaactatatg 10961944  T
Q  511 tatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    || |||| |||||||||| || ||| ||| ||||||||||||    
T  10961945 tagttcgactcgtttggttcacgagatgactcgattatatat 10961986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 534
Target Start/End: Original strand, 3081754 - 3081890
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaa 497  Q
    ||||| |||||| |||||||||| |||||||||||   ||||  || ||| ||||| || ||||||  |||||||||| | ||||||  ||||| |||||    
T  3081754 ttcgatactcgattcgataattggttcgttgaacttggttcacgaaccaaatgagtcgaacttgagttgaaaattaagctcgttaattaaatgagctgaa 3081853  T
Q  498 cttgagttatatatatttcggctcgtttggtccatga 534  Q
    |||||  ||  |||| |||| |||||||||| |||||    
T  3081854 cttgaactaagtatagttcgactcgtttggttcatga 3081890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 475
Target Start/End: Complemental strand, 17441299 - 17441185
Alignment:
Q  361 ctagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagctt 460  Q
    ||||||||| |||| |||||| | |||  ||| | | |||||||||||| | | ||||| |||||||||||| | ||||| || ||| |||||||| |||    
T  17441299 ctagggttggcaatgaaccgaaccaacccgaaaatagttcgaaactcgatttggtaattaattcgttgaacttagttcatgaaccaaatgagttgaactt 17441200  T
Q  461 gagccgaaaattaag 475  Q
    |||  ||||||||||    
T  17441199 gagttgaaaattaag 17441185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 552
Target Start/End: Original strand, 11460103 - 11460196
Alignment:
Q  459 ttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    |||||| || |||||||||||||||   ||||| |||||||||||||  ||||| |||| |||| |||||  ||||| ||| ||||| ||||||    
T  11460103 ttgagctgagaattaagtttgttaaataaatgagctgaacttgagttgaatatagttcgactcggttggtttatgagctgactcgataatatat 11460196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 362 - 552
Target Start/End: Complemental strand, 31621008 - 31620818
Alignment:
Q  362 tagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttg 461  Q
    ||||| ||||||| |||||| | |||||||| | | ||||||| ||||||||| ||||  | | ||||| |   ||||| || | | |||||||| |||     
T  31621008 tagggctgacaatgaaccgaaccaacttgaatatagttcgaaattcgactcgacaattagtccattgaatttggttcatgaacctaatgagttgaacttc 31620909  T
Q  462 agccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||| ||| |||||||| ||||||  ||||| |||||||||||||| ||||| |||| ||||||||||  |||| |||  ||||||||||||    
T  31620908 agctgaatattaagttcgttaattaaatgagctgaacttgagttacatataattcgactcgtttggttaatgacttggctcgattatatat 31620818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 361 - 552
Target Start/End: Complemental strand, 41783466 - 41783275
Alignment:
Q  361 ctagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagctt 460  Q
    |||||| ||||||| ||||||   |||| ||| ||| |||| ||||||||||| |||||  |||||||||||   ||||| || ||| ||||  || |||    
T  41783466 ctagggctgacaatgaaccgatacaactcgaataaagttcggaactcgactcggtaattagttcgttgaacttggttcatgaaccaaatgagccgaactt 41783367  T
Q  461 gagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||  || |||||||| |||||   |||||  |||||||||||||||| || |||| | |||||||| || ||  ||| ||||||||||||    
T  41783366 gagctaaagattaagttcgttaactaaatgagttgaacttgagttatatgtagttcgacccgtttggttcacgaactgactcgattatatat 41783275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 552
Target Start/End: Original strand, 14500742 - 14500896
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaa 497  Q
    |||| |||||||||||||||||  |||||||||||   ||||| || |||  |||  || |||||||  || |||||||| |||||   |||||  ||||    
T  14500742 ttcggaactcgactcgataattagttcgttgaacttggttcatgaaccaaacgagccgaacttgagctaaagattaagttcgttaactgaatgagttgaa 14500841  T
Q  498 cttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    |||||||||||||||  ||| |||||||||| || ||  ||| ||||||||||||    
T  14500842 cttgagttatatatagctcgactcgtttggttcacgaactgactcgattatatat 14500896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 552
Target Start/End: Original strand, 3801357 - 3801554
Alignment:
Q  355 cggtggctagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagtt 454  Q
    |||||| ||||| || |||| |||||| | |||| ||| | | |||| || ||||||||| ||||| ||| |||||||   ||||| || ||| ||||      
T  3801357 cggtgggtagggctggcaatgaaccgaaccaactcgaatatagttcgtaattcgactcgacaattggttcattgaacttggttcatgaaccaaatgagcc 3801456  T
Q  455 gagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    || ||||||| |||||||||||| ||||||  |||||  |||||||||  |||| ||  ||||  ||||| ||| |||||| ||| ||||||||||||    
T  3801457 gaacttgagctgaaaattaagttcgttaattaaatgagttgaacttgaactataaatggttcgattcgttaggttcatgagatgactcgattatatat 3801554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 528
Target Start/End: Original strand, 1840748 - 1840853
Alignment:
Q  423 tcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcg 522  Q
    ||||||||||   ||||| || ||| |||| ||| ||||||| |||||||||||| || ||   ||||| ||||||||||| | |||||| |||||||||    
T  1840748 tcgttgaacttggttcatgaaccaaatgagctgaacttgagctgaaaattaagttcgtgaaataaatgagctgaacttgagatgtatatagttcggctcg 1840847  T
Q  523 tttggt 528  Q
     |||||    
T  1840848 gttggt 1840853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 28427114 - 28427155
Alignment:
Q  75 agtggttgttccatatggtttggtgatcttatagacttaaga 116  Q
    |||||||||||||| ||||||||||||||||| || ||||||    
T  28427114 agtggttgttccatctggtttggtgatcttattgatttaaga 28427155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 475
Target Start/End: Original strand, 32945021 - 32945134
Alignment:
Q  362 tagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttg 461  Q
    ||||| ||||||| |||||| | |||| ||| | | |||||||||||| ||| ||||||||||||| ||||   ||||| || ||| ||||| || ||||    
T  32945021 tagggctgacaatgaaccgaaccaactcgaaaatagttcgaaactcgattcggtaattgattcgttaaacttggttcatgaaccaaatgagtcgaacttg 32945120  T
Q  462 agccgaaaattaag 475  Q
    || | |||||||||    
T  32945121 agtcaaaaattaag 32945134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 385 - 552
Target Start/End: Complemental strand, 34655152 - 34654985
Alignment:
Q  385 aacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaat 484  Q
    |||| ||| ||| |||| ||||||||||| |||||  || |||||||| | ||||| || |||  |||| || |||||||  || ||||||||||||||     
T  34655152 aactcgaataaagttcggaactcgactcggtaattagtttgttgaacttagttcatgaaccaaacgagtcgaacttgagctaaagattaagtttgttaac 34655053  T
Q  485 ataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
      |||||  | ||||||||||||||||| |||| |||||||||| || ||  ||| ||||||||||||    
T  34655052 taaatgagttaaacttgagttatatatagttcgactcgtttggttcacgaactgactcgattatatat 34654985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 11161616 - 11161526
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||  ||||||||    
T  11161616 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattat 11161526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 411 - 552
Target Start/End: Complemental strand, 34516229 - 34516088
Alignment:
Q  411 tcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatata 510  Q
    |||| ||||||||| |||||||  |||||| || ||| ||||  || ||||||| |||||||||||| ||  ||  | ||| ||||||||||  |||||     
T  34516229 tcgacaattgattcattgaacttgattcatcaaccaaatgagccgaacttgagctgaaaattaagttcgtcgattaattgagctgaacttgaactatatg 34516130  T
Q  511 tatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    || |||| |||||||||| || ||| ||| ||||||||||||    
T  34516129 tagttcgactcgtttggttcacgagatgactcgattatatat 34516088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 513
Target Start/End: Complemental strand, 9136051 - 9135941
Alignment:
Q  403 aactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttga 502  Q
    |||||||||||| |||| | ||||||||||   || || |||||| | || ||| ||||||| |||| |||||||||||||   ||||||||| ||||||    
T  9136051 aactcgactcgacaattaactcgttgaacttggtttatgaatcaaataagctgaacttgagctgaaatttaagtttgttaactaaatgaactggacttga 9135952  T
Q  503 gttatatatat 513  Q
      |||||||||    
T  9135951 tctatatatat 9135941  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 385 - 463
Target Start/End: Original strand, 10656116 - 10656194
Alignment:
Q  385 aacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgag 463  Q
    |||||||| ||| || || |||||| ||||||||||||| ||| ||||  ||||||||||||| ||| |||| ||||||    
T  10656116 aacttgaataaaatttgagactcgattcgataattgatttgttaaacttgattcattaatcaattgaattgaacttgag 10656194  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 34064749 - 34064659
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| || |||||||||    
T  34064749 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggttcgattat 34064659  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 36538700 - 36538610
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| || |||||||| || ||||| |||| |||||| ||| |||||| ||| ||||||||    
T  36538700 cttgagctgaaaattaagttcgttaattaaatgagctaaacttgagctacatatagttcgactcgttaggttcatgagatgactcgattat 36538610  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 535
Target Start/End: Complemental strand, 33831539 - 33831462
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgag 535  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| ||||||    
T  33831539 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgag 33831462  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 548
Target Start/End: Complemental strand, 26436396 - 26436308
Alignment:
Q  460 tgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||  ||||||||    
T  26436396 tgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattat 26436308  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 545
Target Start/End: Original strand, 3409224 - 3409371
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaa 497  Q
    |||||||||||| |||| |||| | ||||||||||   ||||| || ||| |||  ||| ||||||| |||||||||||| |||||   ||||| |||||    
T  3409224 ttcgaaactcgattcgacaattaactcgttgaacttggttcatgaaccaaatgaactgaacttgagctgaaaattaagttcgttaaataaatgagctgaa 3409323  T
Q  498 cttgagttatatatatttcggctcgtttggtccatgagttgattcgat 545  Q
     ||||| | |||||| |||| |||| ||| | |||||| ||| |||||    
T  3409324 tttgagctgtatatagttcgactcgattgattcatgagctgactcgat 3409371  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 552
Target Start/End: Original strand, 34116225 - 34116363
Alignment:
Q  414 ataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataat-gaactgaacttgagttatatata 512  Q
    |||||||||| || ||||| | ||||| || ||| ||||  || |||||||  ||||||||||| | ||| ||||| || ||||||||||| ||||| ||    
T  34116225 ataattgatttgtcgaacttagttcatgaaccaaatgagccgaacttgagcttaaaattaagttcgctaa-ataattgagctgaacttgagctatatgta 34116323  T
Q  513 tttcggctcgtttggtccatgagttgattcgattatatat 552  Q
     |||| |||||||||| |||| | ||| ||||||||||||    
T  34116324 gttcgactcgtttggttcatgtgatgactcgattatatat 34116363  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 18667759 - 18667701
Alignment:
Q  494 tgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||||||||||||||||| |||| |||||||||| ||| |  ||| ||||||||||||    
T  18667759 tgaacttgagttatatatagttcgactcgtttggttcataaactgactcgattatatat 18667701  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 27634715 - 27634625
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| || | |||||| ||| |||||| ||| || |||||    
T  27634715 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagtttgactcgttaggttcatgagatgactccattat 27634625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 38409667 - 38409761
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||||| ||||||||||||||| ||   | ||| |||||||| |  |||||||| ||||||||||||||| || ||| |||  |||||||||||    
T  38409667 cttgagctgaaaattaagtttgtgaactaattgagctgaactttaactatatatagttcggctcgtttggttcacgagatgacccgattatatat 38409761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 39690178 - 39690120
Alignment:
Q  494 tgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    |||||||||| ||||| || |||| |||||||||| |||||| ||| ||||||||||||    
T  39690178 tgaacttgagctatatgtagttcgactcgtttggttcatgagatgactcgattatatat 39690120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 528
Target Start/End: Original strand, 2647015 - 2647140
Alignment:
Q  403 aactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttga 502  Q
    ||||||||||| |||||  |||||||||||   ||||| || |||  |||  || |||||||  ||||||||||| |||||   ||| |  |||||||||    
T  2647015 aactcgactcggtaattagttcgttgaacttggttcatgaaccaaacgagccgaacttgagctaaaaattaagttcgttaactaaataagttgaacttga 2647114  T
Q  503 gttatatatatttcggctcgtttggt 528  Q
    |||||||||| |||| ||||||||||    
T  2647115 gttatatatagttcgactcgtttggt 2647140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 41332335 - 41332250
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaa 483  Q
    |||||||||||| |||| |||| | | ||||||||   ||||| || ||| ||||||||  |||||| ||||||||||||||||||    
T  41332335 ttcgaaactcgattcgacaattaacttgttgaacttggttcataaaccaattgagttgaatttgagctgaaaattaagtttgttaa 41332250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 552
Target Start/End: Complemental strand, 40680263 - 40680171
Alignment:
Q  460 tgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||| |||||||| ||| |||||   ||||| ||||| |||||||||||||| |||| |||| ||||| ||| || ||| ||||| ||||||    
T  40680263 tgagctgaaaattatgttcgttaaataaatgagctgaatttgagttatatatagttcgactcgattggttcataagctgactcgataatatat 40680171  T

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Target: scaffold0260 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 552
Target Start/End: Complemental strand, 11563 - 11419
Alignment:
Q  408 gactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagttat 507  Q
    |||||||||||| ||||||||||||  ||||||  | ||| ||||  || ||| ||  |||||||||||| ||||||  ||||| ||||| ||||  |||    
T  11563 gactcgataattaattcgttgaacttgattcatataccaaatgagccgaacttcagatgaaaattaagttcgttaattaaatgagctgaatttgaactat 11464  T
Q  508 atatatttcggctcgtttggtccatgagttgattcgattatatat 552  Q
    ||||| |||| |||||||||| ||| | |||| || |||||||||    
T  11463 atataattcgactcgtttggttcatcaattgactcaattatatat 11419  T

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Target: scaffold0316 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 19340 - 19250
Alignment:
Q  458 cttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggtccatgagttgattcgattat 548  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||| || ||||| |||| |||||| ||| |||||| ||  ||||||||    
T  19340 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatataattcgactcgttaggttcatgagatggctcgattat 19250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 549
Target Start/End: Original strand, 7352 - 7495
Alignment:
Q  406 tcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaacttgagtt 505  Q
    |||| |||||||||||||||| |||||   ||||| || ||| ||||  || ||||||| |||||||||||| | |||   | ||| ||||||||||       
T  7352 tcgattcgataattgattcgtcgaacttggttcatgaaccaaatgagccgaacttgagctgaaaattaagttcgctaactaattgagctgaacttgaacc 7451  T
Q  506 atatatatttcggctcgtttggtccatgagttgattcgattata 549  Q
    |||||||  ||| |||||||||| |||||| ||| |||||||||    
T  7452 atatataggtcgactcgtttggttcatgagatgactcgattata 7495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 528
Target Start/End: Complemental strand, 14567 - 14400
Alignment:
Q  361 ctagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagctt 460  Q
    |||||| ||||||| |||||| | |||  ||| | | |||||||||||| ||| |||||||||| |||||||   ||||| || ||| ||| |||| |||    
T  14567 ctagggctgacaatgaaccgaaccaacccgaaaatagttcgaaactcgattcggtaattgattcattgaacttggttcatgaaccaaatgatttgaactt 14468  T
Q  461 gagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatatttcggctcgtttggt 528  Q
    ||| ||||||||||| | || ||   ||||| | |||||| ||||||  ||| |||| ||||||||||    
T  14467 gagtcgaaaattaagctcgtcaaataaatgagccgaactttagttatggatagttcgactcgtttggt 14400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 432
Target Start/End: Complemental strand, 21227 - 21157
Alignment:
Q  362 tagggttgacaataaaccgagcgaacttgaacaaatttcgaaactcgactcgataattgattcgttgaact 432  Q
    ||||| ||||||| |||||| | |||| ||| | | ||||| |||||| ||||||||||||||||||||||    
T  21227 tagggctgacaatgaaccgaaccaactcgaaaatagttcgagactcgattcgataattgattcgttgaact 21157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 535
Target Start/End: Original strand, 124517 - 124654
Alignment:
Q  398 ttcgaaactcgactcgataattgattcgttgaactaaattcattaatcaagtgagttgagcttgagccgaaaattaagtttgttaatataatgaactgaa 497  Q
    ||||||| | ||||||| ||||| | | |||||||   ||||| || ||| ||||| || ||||||| ||  |||||||||||||||  ||||| |||||    
T  124517 ttcgaaatttgactcgacaattggtccattgaacttggttcatgaaccaaatgagtcgaacttgagctgattattaagtttgttaattaaatgagctgaa 124616  T
Q  498 cttgagttatatatatttcggctcgtttggtccatgag 535  Q
     ||||  |||| ||||||||  ||||||||| ||||||    
T  124617 tttgaactatagatatttcgattcgtttggttcatgag 124654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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