View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9041_low_5 (Length: 645)
Name: NF9041_low_5
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9041_low_5 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 368 - 645
Target Start/End: Complemental strand, 51732433 - 51732156
Alignment:
| Q |
368 |
acctcaagaccattttgtggcttgccttgttctaaaacttcaccatctattgcaaacccatttgcttgtgccgcaaaatttgttaagtccgcgttattca |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51732433 |
acctcaagaccattttgtggcttgccttgttctaaaacttcaccatctattgcaaacccatttgcttgtgccgcaaaatttattaagtccgcgttattca |
51732334 |
T |
|
| Q |
468 |
tttttgacacaaaatctgatgtatctatagcttcaccaattgctttgttcattttgtgtagttcttccagcaataaatcacgagaagttaataatgctct |
567 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51732333 |
tttttgacacaaaatctgacgtatctatagcttcaccaattgctttgttcattttgtgtagttcttccagcaataaatcacgagaagttaataatgctct |
51732234 |
T |
|
| Q |
568 |
gacaagcatgatatctttcacatctagagaagtaacacctctgaagcgctgcacaggaacgcaaaacattctcctgtt |
645 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
51732233 |
gacaagcatgatatctttcacatctagagaagtaacacctctgaagcgctgcacaggcacgaaaaacattctcctgtt |
51732156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 51732784 - 51732537
Alignment:
| Q |
17 |
aatgatgaggcatctctaccttagaataaatcatccatattgaccactcagctttccgatccttggcccatgtattgtgtaaaagtcttagtatctctgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51732784 |
aatgatgaggcatctctaccttagaataaatcatccatattgaccactcagctttccgatccttggcccatgtattgtgtaaaagtcctagtatctctgt |
51732685 |
T |
|
| Q |
117 |
cttgttttccctatgaatttttaaaaatatcttccataaatagtgcagttgatctcccaatgaatgaaaacaattcaacagttcactttgagacagggaa |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51732684 |
cttgttttctctatgaatttttaaaaatatcttccataaatagtgcagttgatctcccaatgaatgaaaacagttcaacagttcactttgagacagggaa |
51732585 |
T |
|
| Q |
217 |
tggaggttttcagcattcggaatatcctgagccccatttcctccctgt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51732584 |
tggaggttttcagcattcggaatatcctgagccccatttcctccctgt |
51732537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 355754 - 355685
Alignment:
| Q |
17 |
aatgatgaggcatctctaccttagaataaatcatccatattgaccactcagctttccgatccttggccca |
86 |
Q |
| |
|
||||||||||||||| ||||||||| || | ||||||||||||||| || ||||||| |||||||||||| |
|
|
| T |
355754 |
aatgatgaggcatctgtaccttagagtagaccatccatattgaccattctgctttcctatccttggccca |
355685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University