View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9041_low_6 (Length: 616)
Name: NF9041_low_6
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9041_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 530
Target Start/End: Original strand, 658869 - 659383
Alignment:
| Q |
13 |
tttcgtgttgaattatgagacatgtatcatgatttggatatagtttggcgagagcgtattccgaaacttattgtgaaaaattattctaaaattcttatta |
112 |
Q |
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| T |
658869 |
tttcatgttgaattctgagacatgtatcatgatttggatatggtttggggagagcgtattccggaacttattgtgaaaaattattctaaaattcttatta |
658968 |
T |
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| Q |
113 |
atatgactatagataactgggtcaattttcacattgttgcggcatatttccaaccttttgtcttttgattatcgtatccactttcatcatacatagagag |
212 |
Q |
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| T |
658969 |
atatgattatagataactgggtcaattttcacattgttgtagcatatttccaaccttttgtcttttgatcaacgtatccactttcatcatacatggagag |
659068 |
T |
|
| Q |
213 |
agcacaattattgtgctgattgactagcaaactttaactcttcttttaactattttgttgttgttagaatgaattatccgcctagtaagctccaaattaa |
312 |
Q |
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| T |
659069 |
aggagaattcttgtgttgattgactagcaaactttaacccttcttttaactcttttgttgttgttagaatgaagtatctgcctaataagctccaaattaa |
659168 |
T |
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| Q |
313 |
tactcctattttatgatatttctaaagctcgattacctaagaatggtctagttagttttttagttttccgtatgacctttggcctcttttgtgaaaatat |
412 |
Q |
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| T |
659169 |
tacttctattttatgatatttctaaagctcgattacctaagaat-gtctagttagttttttagttttccgtatgacctttggcctc--ttgtgaaaatat |
659265 |
T |
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| Q |
413 |
acagagagaatgaaaatttaaaaggagagggggatattccnnnnnnnnnnnntgtaatgtagcacgggacaaaaataaacgactgcatctaataggtttg |
512 |
Q |
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| T |
659266 |
actgagagaatgaaaatttaaaaggagagggggatattccaaaaagaaaaaatgtaatgtagcacgagacaacaataaacgactgcatctaataggtttg |
659365 |
T |
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| Q |
513 |
gttttcacccatattcta |
530 |
Q |
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| T |
659366 |
tttttcacccatattcta |
659383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 7417157 - 7417228
Alignment:
| Q |
33 |
catgtatcatgatttggatatagtttggcgagagcgtattccgaaacttattgtgaaaaattattctaaaat |
104 |
Q |
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|||||||| || |||||| |||||||||||||||| |||||| |||| ||||| |||| | |||||||||| |
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| T |
7417157 |
catgtatcttggtttggagatagtttggcgagagcacattccgcaactcattgttaaaagtaattctaaaat |
7417228 |
T |
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