View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9041_low_7 (Length: 518)
Name: NF9041_low_7
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9041_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 39790453 - 39789978
Alignment:
| Q |
19 |
cagtaatgtaaagtaaaactacctgtaagaacttgatgatgttgctagcaccaaatacacggtgagcggtggtaaatttggaaggttcagtgggagggaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
39790453 |
cagtaatgtaaagtaaaactacctgtaagaacttgatgatgttgctagcaccaaatacacggtgagcagtggtaaatttggaaggttccgtgggagggaa |
39790354 |
T |
|
| Q |
119 |
ataaggtgccaaaacacatttctcagcacatcttcttcttaaaatcttgcaagcagcacaaggactcatgactacttgaggagccataggtggttgtgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39790353 |
ataaggtgccaaaacacatttctcagcacatcttcttcttaaaatcttgcaagcagcacaaggactcatgactacttgaggagccataggtggttgtgaa |
39790254 |
T |
|
| Q |
219 |
gatgttgaagattgagaaaatggaagagaggatatttgagtgtttgtgtcattctccatgttttcttttggtctatagttacttgttctttgggtgtttt |
318 |
Q |
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||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39790253 |
gatgttggagattgagaaaatggaagggaggaaatttgagtgtttgtgtcattctccatgttttcttttggtgtatagttacttgttctttgggtgtttt |
39790154 |
T |
|
| Q |
319 |
tatgggtacaaaagaggggtttgagaatttgagagtgagtgtaatgtgtgtggggttggttttagaagccaaaaggagagagggctttaatttataggaa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39790153 |
tatgggtacaaaagaggggtttgagaatttgagagtgagtgtagtgtgtgtggggttggttttagaagccaaaaggagagagggctttaatttataggaa |
39790054 |
T |
|
| Q |
419 |
aaagatgatgatatgttggggagtttggtagcaccgtcatctgcagtgtgctaaatatcggaaccaattagaaaac |
494 |
Q |
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| T |
39790053 |
aaagatgatgatatgttggggagtttggtagcaccgtcatctgcagtgtgctaaatatcggaaccaattagaaaac |
39789978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 38 - 187
Target Start/End: Original strand, 22428009 - 22428161
Alignment:
| Q |
38 |
tacctgtaagaacttgatgatgttgctagcaccaaatacacggtgagcggtggtaaatttggaaggttcagtgggagggaaataaggtgccaaaacacat |
137 |
Q |
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|||||||||||| ||||||||||||||||||||||| || | ||||| ||||||| |||| ||| ||||| ||||| ||||||||||||||||||||| |
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| T |
22428009 |
tacctgtaagaatttgatgatgttgctagcaccaaaaactctatgagcaatggtaaacttggcagggtcagtaggaggaaaataaggtgccaaaacacat |
22428108 |
T |
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| Q |
138 |
ttct---cagcacatcttcttcttaaaatcttgcaagcagcacaaggactcat |
187 |
Q |
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|| | ||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
22428109 |
ttatcagcagcacatcttctcctcaaaatcttgcaagcagcacaaggactcat |
22428161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 41983377 - 41983470
Alignment:
| Q |
88 |
tggtaaatttggaaggttcagtgggagggaaataaggtgccaaaacacatttctcagcacatcttcttcttaaaatcttgcaagcagcacaaggactc |
185 |
Q |
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||||||| |||| ||||||||||| || |||||||||||||||||||||||| |||||| |||||| ||||| ||||||| ||||||| ||||| |
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| T |
41983377 |
tggtaaacttggcaggttcagtggaagagaaataaggtgccaaaacacatttatcagca----atcttctcaaaatattgcaagaagcacaatgactc |
41983470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 36 - 178
Target Start/End: Complemental strand, 44680972 - 44680836
Alignment:
| Q |
36 |
actacctgtaagaacttgatgatgttgctagcaccaaatacacggtgagcggtggtaaatttggaaggttcagtgggagggaaataaggtgccaaaacac |
135 |
Q |
| |
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|||||| |||||||||||||||| |||||| |||||| || | | || ||||||| |||| | |||||||| ||| |||||||||||||||||||| |
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| T |
44680972 |
actacccgtaagaacttgatgatcctgctagaaccaaagactc--ttagaaatggtaaacttggcaagttcagtgagagagaaataaggtgccaaaacac |
44680875 |
T |
|
| Q |
136 |
atttctcagcacatcttcttcttaaaatcttgcaagcagcaca |
178 |
Q |
| |
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|||| ||| || |||||| |||||||||||||||||||| |
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| T |
44680874 |
atttatcaaca----atcttctcaaaatcttgcaagcagcaca |
44680836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 13171746 - 13171696
Alignment:
| Q |
88 |
tggtaaatttggaaggttcagtgggagggaaataaggtgccaaaacacatt |
138 |
Q |
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||||||| |||| |||||||||||||| ||||||||||| ||||||||||| |
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| T |
13171746 |
tggtaaacttggcaggttcagtgggagagaaataaggtgtcaaaacacatt |
13171696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 44691667 - 44691585
Alignment:
| Q |
102 |
ggttcagtgggagggaaataaggtgccaaaacacatttctcagcacatcttcttcttaaaatcttgcaagcagcacaaggactc |
185 |
Q |
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||||||||| | | |||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||| ||||| ||||| |
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| T |
44691667 |
ggttcagtgagtgagaaataaggtgccaaaacacatttatcaccac-caatcttctcaaaatcttgcaagcatcacaacgactc |
44691585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 28057599 - 28057734
Alignment:
| Q |
57 |
atgttgctagcaccaaatacacggtgagcggtggtaaatttggaaggttcagtg--ggagggaaataaggtgccaaaacacatttctcagca---catct |
151 |
Q |
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|
||||||||||||||||| || | ||||| ||||||| |||| ||| ||||| ||||| ||||||| ||||||| |||| || ||| || ||||| |
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| T |
28057599 |
atgttgctagcaccaaaaactctatgagcaatggtaaacttggcaggatcagtataggaggaaaataagatgccaaagcacacttatcaacagtacatct |
28057698 |
T |
|
| Q |
152 |
tcttcttaaaatcttgcaagcagcacaaggactcat |
187 |
Q |
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||| || ||||||||||||||||||||||||||||| |
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| T |
28057699 |
tctcctcaaaatcttgcaagcagcacaaggactcat |
28057734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 57 - 187
Target Start/End: Complemental strand, 35958687 - 35958552
Alignment:
| Q |
57 |
atgttgctagcaccaaatacacggtgagcggtggtaaatttggaaggttcagtg--ggagggaaataaggtgccaaaacacatttctcagca---catct |
151 |
Q |
| |
|
||||||||||||||||| || | ||||| ||||||| |||| ||| ||||| ||||| ||||||| |||||||||||| || ||| || ||||| |
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| T |
35958687 |
atgttgctagcaccaaaaactctatgagcaatggtaaacttggcaggatcagtataggaggaaaataagatgccaaaacacacttatcaacagtacatct |
35958588 |
T |
|
| Q |
152 |
tcttcttaaaatcttgcaagcagcacaaggactcat |
187 |
Q |
| |
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||| || |||||||||||||||||||||| |||||| |
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| T |
35958587 |
tctcctcaaaatcttgcaagcagcacaagaactcat |
35958552 |
T |
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