View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9041_low_8 (Length: 496)
Name: NF9041_low_8
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9041_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 139 - 478
Target Start/End: Complemental strand, 28925999 - 28925660
Alignment:
| Q |
139 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28925999 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
28925900 |
T |
|
| Q |
239 |
tcaatgattactgccacaaaaaccagctttttgaccccaagaaaaagaagataatctgtgatgcaaatttaaaaactttgctgaggcggcggaaaacagt |
338 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28925899 |
tcaatgattactgccacaaacaccagctttttgaccccaagaaaaagaagataatctgtgatgcaaatttaaaaactttgctgaggcggcggaaaacagt |
28925800 |
T |
|
| Q |
339 |
taaaaagaacatcatacagaagcttcttgcatctcattttgtagataattttgaagaaactgatagtagttcagaagaaagggatgacaatgaggcattc |
438 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28925799 |
taaaaagaacaacatacagaagcttcttgcatctcattttgtagataattttgaagaaactgatagtagttcagaagaaagggatgacaatgaggcattc |
28925700 |
T |
|
| Q |
439 |
aaatttcgaaagcacggaaaattgaattcaactataaaat |
478 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
28925699 |
aaatttcgaaagcacagaaatttgaattcaactataaaat |
28925660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 139 - 478
Target Start/End: Complemental strand, 28916773 - 28916425
Alignment:
| Q |
139 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
238 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28916773 |
gattttgttggatggggttcaagaagtctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatca |
28916674 |
T |
|
| Q |
239 |
tcaatgattactgccacaaaaaccagctttttgaccccaagaaaaagaaga---taatctgtgatgcaaatttaaaaactttgctgaggcggcggaaaac |
335 |
Q |
| |
|
|| || | |||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| ||| ||| || ||| |
|
|
| T |
28916673 |
tccataagtactgccaaaaaaaccagctttttgaccccaagaaaaagaagatggtaatctgcgatgcaaatttaataactttgttga---ggcagagaac |
28916577 |
T |
|
| Q |
336 |
agttaaaaagaacatcatacagaagcttcttgcatctcattttgtagataattttgaagaaactgat---------agtagttcagaagaaagggatgac |
426 |
Q |
| |
|
| |||| ||||||| |||||| |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28916576 |
aattaataagaacaacatacaaaagcttcttgcatcgcattttgcagataattttgaagaaactgatagtaatatcagtagttcagaagaaagggatgat |
28916477 |
T |
|
| Q |
427 |
aatgaggcattcaaatttcgaaagcacggaaaattgaattcaactataaaat |
478 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
28916476 |
aatgaggcattcaaatttcgaaagcacagaaatttgaattcaactataaaat |
28916425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 139 - 477
Target Start/End: Complemental strand, 28892407 - 28892057
Alignment:
| Q |
139 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
238 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
28892407 |
gattttgttggatggggttcaagaagtctcgtagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcaatca |
28892308 |
T |
|
| Q |
239 |
tcaatgattactgccacaaaaaccagctttttgaccccaagaaaaagaaga---taatctgtgatgcaaatttaaaaactttgctgaggcggcggaaaac |
335 |
Q |
| |
|
||| | | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |||||||| | |
|
|
| T |
28892307 |
tcagtaagtactgccacaaaaaccagctttttgaccccaagaaaaagaagaaggtaatctgtgatgcaaatttagaaactttactga---ggcggaaatc |
28892211 |
T |
|
| Q |
336 |
agttaaaaagaacatcatacagaagcttcttgcatctcattttgtagataattttgaagaaactgat---------agtagttcagaagaaaggg---at |
423 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
28892210 |
agttaataagaacaacatacaaaagcttcttgcatcgcattttgtagataattttgaagaaactgatggtattatcagtagttcagaagaaagggataat |
28892111 |
T |
|
| Q |
424 |
gacaatgaggcattcaaatttcgaaagcacggaaaattgaattcaactataaaa |
477 |
Q |
| |
|
| ||||||||||||||||||| |||||| |||| ||||||||||||| |||| |
|
|
| T |
28892110 |
ggtaatgaggcattcaaatttccaaagcagagaaatttgaattcaactacaaaa |
28892057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 139 - 477
Target Start/End: Complemental strand, 28902361 - 28902011
Alignment:
| Q |
139 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
238 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| || || ||| |||| ||||||| |||| |
|
|
| T |
28902361 |
gattttgttggatggggttcaagaagtctcatagattttcttaaaagtattggtagagacacgactgaagcgttgtctgaacttgatgttgcttggatca |
28902262 |
T |
|
| Q |
239 |
tcaatgattactgccacaaaaaccagctttttgaccccaagaaaaagaaga---taatctgtgatgcaaatttaaaaactttgctgaggcggcggaaaac |
335 |
Q |
| |
|
||| | |||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| |||| || ||| || | |||||| | | |
|
|
| T |
28902261 |
tcatccagtactgccacacaaaccagctttttgaccccaagaaaaagaagatcgtaatttgtgatgcaaagttaagaaatttactaa---ggcggagatc |
28902165 |
T |
|
| Q |
336 |
agttaaaaagaacatcatacagaagcttcttgcatctcattttgtagataattttgaagaaactgat---------agtagttcagaagaaaggg---at |
423 |
Q |
| |
|
||| || || |||| ||| || || ||||||| ||| ||||||| |||||||||||| ||||||||| | ||||||||||||||||| || |
|
|
| T |
28902164 |
agtgaataaaaacaacattcaaaaccttcttgaatcgcattttgcagataattttgaggaaactgatggtattatcactagttcagaagaaagggataat |
28902065 |
T |
|
| Q |
424 |
gacaatgaggcattcaaatttcgaaagcacggaaaattgaattcaactataaaa |
477 |
Q |
| |
|
| |||| ||||||||||||| |||||| ||||| ||||||||||||| |||| |
|
|
| T |
28902064 |
ggtaatggagcattcaaatttccaaagcagggaaatttgaattcaactacaaaa |
28902011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 28926137 - 28926067
Alignment:
| Q |
1 |
gattctgatgtgagcaactttataggatctgattgtgacgacttcgatgacacgtcaagagttaaatcagt |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28926137 |
gattctgatgtgagcaactttataggatctgattgtgacgacttcgatgaaacgtcaagagttaaatcagt |
28926067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 302
Target Start/End: Complemental strand, 28935601 - 28935438
Alignment:
| Q |
142 |
tttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcgtca |
241 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||| | ||| ||| ||||||||||| ||| |
|
|
| T |
28935601 |
tttgttggatggggttcaagaagtctcatagattttcttaaagatattggtagagacacggcaaaagcatttacggaacatgatgttgcttcgataatca |
28935502 |
T |
|
| Q |
242 |
atgattactgccacaaaaaccagctttttgaccccaagaaaaa---gaagataatctgtgatgc |
302 |
Q |
| |
|
||||| ||| | |||||| | ||||||||| | ||||||| |||| ||||||||||||| |
|
|
| T |
28935501 |
tagattattgcaataaaaacaacctttttgactcttagaaaaagaggaaggtaatctgtgatgc |
28935438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 28902499 - 28902435
Alignment:
| Q |
4 |
tctgatgtgagcaactttataggatctgattgtgacgacttcgatgacacgtcaagagttaaatc |
68 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||| ||||| | || |||||||||||||||||| |
|
|
| T |
28902499 |
tctgatgcgagtgactttataggttctgattgtgatgacttggttggcacgtcaagagttaaatc |
28902435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 28916889 - 28916835
Alignment:
| Q |
17 |
actttataggatctgattgtgacgacttcgatgacacgtcaagagttaaatcagt |
71 |
Q |
| |
|
|||||||||| ||||||| ||||||||| | || |||||||||||||||| |||| |
|
|
| T |
28916889 |
actttataggttctgattctgacgacttggttggcacgtcaagagttaaaccagt |
28916835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 28935730 - 28935681
Alignment:
| Q |
4 |
tctgatgtgagcaactttataggatctgattgtgacgacttcgatgacac |
53 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
28935730 |
tctgatgtgagttactttataggttctgattgtgacgacctagatgacac |
28935681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University