View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9041_low_9 (Length: 409)
Name: NF9041_low_9
Description: NF9041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9041_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 41339056 - 41338680
Alignment:
| Q |
15 |
tggtggtggcatacgaggaactgtgggaggcacaacgttctcagaacctgaaggtctccaactccaataaaatggtgctcggaaatctattgaatgtaaa |
114 |
Q |
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| T |
41339056 |
tggtggtggcatacgaggaactgtgggaggcacaacgttctcagaacctgaaggtctccaactccaataaaatggtgctcggaaatctattgaatgtaaa |
41338957 |
T |
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| Q |
115 |
atannnnnnnnatgatagaaaagctcctctaatcgtccattctcacaataccgtccatacagaagattcttccaatagctttcaaaatcaccatataaaa |
214 |
Q |
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| T |
41338956 |
atagggggaggatgatagaaaagctcctctaatcgtccattctcacaataccgtccatacagaagattcttccaatagctttcaaaatcaccatataaaa |
41338857 |
T |
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| Q |
215 |
tatcataaaagtggttcaaaaaataatgcgaatcttcaacatggctaatattctcatgcctgaagatgtccatgctcacagttgatggatcatggacgtc |
314 |
Q |
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| T |
41338856 |
tatcataaaagtggttcaaaaaataatgcgaatcttcaacatggctaatattctcatgcctgaagatgtccatgctcacagttgatggatcatggacgtc |
41338757 |
T |
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| Q |
315 |
atcaagttgagtaggcttcagagctgaggatgatagactgcactttaatgttgagtccaaagctggagtgtatttac |
391 |
Q |
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| T |
41338756 |
atcaagttgagtaggcttcagagctgaggatgatagactgcactttaatgttgagtccgaagctggaatgtatttac |
41338680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 368
Target Start/End: Complemental strand, 22629177 - 22629079
Alignment:
| Q |
270 |
atgcctgaagatgtccatgctcacagttgatggatcatggacgtcatcaagttgagtaggcttcagagctgaggatgatagactgcactttaatgttga |
368 |
Q |
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| T |
22629177 |
atgcctgaataagtctttgctcaaagttgatggacaatggacattatcaagttgagtagccttcagaggtgaggatgatagattggtctctaatgttga |
22629079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 22629495 - 22629455
Alignment:
| Q |
32 |
gaactgtgggaggcacaacgttctcagaacctgaaggtctc |
72 |
Q |
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| T |
22629495 |
gaactgcgggaggcacaacgttctcaaaacctgaaggtctc |
22629455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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