View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9042_low_5 (Length: 512)
Name: NF9042_low_5
Description: NF9042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9042_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 81 - 500
Target Start/End: Complemental strand, 16208862 - 16208457
Alignment:
| Q |
81 |
tttttgagcgtgacatggaggcaacactttgctttatacggagcaatataggacactattcttttgctttgatttgtgtattttcatgcaatgcaactac |
180 |
Q |
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| T |
16208862 |
tttttgagcgtgacatggaggcaacactttgctttatacggagcaatataggacactattcttttgctttgatttgtgtattttcatgcaatgcaactac |
16208763 |
T |
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| Q |
181 |
ggtgtggcaaaagaactccttatcctttacgtacaattttgttaaaggaagattttatgtttccttgcatgttgtgtcatannnnnnnnnnnnnatgctt |
280 |
Q |
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| T |
16208762 |
ggtgtgccaaaagaactccttatcctttacgtacaattttgttaaaggaagattttgtgtttccttgcatgttgtgtc----tctctctctctcatgctt |
16208667 |
T |
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| Q |
281 |
gtggaatcaaataggggaagggaaaaaggatagaatcaaactaatttactacattatttacatgatttatgaataaatcagtcgcaatatcaatcggtca |
380 |
Q |
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| T |
16208666 |
gtggaatcaaataggggaagggaaaaaggatagaatcaaactaatttactacattatttacatgatttatgaataaatcagtcgcaacatca-------- |
16208575 |
T |
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| Q |
381 |
cgattgcgtctatataagttgcatttgacaataactcggtgcgatatcaaaaattgtagttgcagtagcaattgcggccatcaattacatttgactgcga |
480 |
Q |
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| T |
16208574 |
--attgcgtctatataagttgcatttgacaataactcggtgcgatatcaaaaattgtagttgcagtagcaattgcggccatcaattacatttgactgcga |
16208477 |
T |
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| Q |
481 |
ttcttcacaatatcaagaat |
500 |
Q |
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| T |
16208476 |
ctcttcacaatatcaagaat |
16208457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 16208924 - 16208894
Alignment:
| Q |
19 |
tggagggattatgctatactttctcgaacta |
49 |
Q |
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| T |
16208924 |
tggagggattatgctatactttctcgaacta |
16208894 |
T |
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