View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9042_low_6 (Length: 408)

Name: NF9042_low_6
Description: NF9042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9042_low_6
NF9042_low_6
[»] chr3 (5 HSPs)
chr3 (25-399)||(8101565-8101940)
chr3 (25-71)||(25775578-25775624)
chr3 (25-71)||(40052383-40052429)
chr3 (30-71)||(25211606-25211647)
chr3 (39-71)||(11610594-11610626)
[»] scaffold0020 (1 HSPs)
scaffold0020 (8-71)||(135265-135333)
[»] chr4 (7 HSPs)
chr4 (25-71)||(18513177-18513223)
chr4 (18-71)||(20633535-20633588)
chr4 (8-71)||(22440559-22440621)
chr4 (39-71)||(11596299-11596331)
chr4 (39-71)||(12895216-12895248)
chr4 (39-71)||(29205553-29205585)
chr4 (39-71)||(34306746-34306778)
[»] chr2 (4 HSPs)
chr2 (25-71)||(10535687-10535733)
chr2 (25-71)||(11223795-11223841)
chr2 (39-71)||(35056964-35056996)
chr2 (39-71)||(44635578-44635610)
[»] chr6 (5 HSPs)
chr6 (8-57)||(21924907-21924956)
chr6 (30-71)||(5569825-5569866)
chr6 (39-71)||(426480-426512)
chr6 (39-71)||(7977772-7977804)
chr6 (39-71)||(12236744-12236776)
[»] scaffold0004 (1 HSPs)
scaffold0004 (24-71)||(92892-92939)
[»] chr7 (3 HSPs)
chr7 (8-71)||(28155608-28155671)
chr7 (26-71)||(35862023-35862068)
chr7 (39-71)||(32093956-32093988)
[»] chr5 (2 HSPs)
chr5 (25-71)||(2436982-2437028)
chr5 (25-71)||(27932306-27932352)
[»] chr1 (7 HSPs)
chr1 (25-71)||(2218299-2218345)
chr1 (25-71)||(16297223-16297269)
chr1 (25-71)||(46940750-46940796)
chr1 (30-71)||(31694641-31694682)
chr1 (39-71)||(9630563-9630595)
chr1 (39-71)||(16812641-16812673)
chr1 (31-71)||(38078603-38078643)


Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 25 - 399
Target Start/End: Complemental strand, 8101940 - 8101565
Alignment:
Q  25 tgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcatggtatacagtagtctggatatgaaagtgtatctaactctgattatgttgttaa 124  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8101940 tgtcggacactggtacacgtctaatctgaggagtgttcgtgcttcatagtatacagtagtctggatatgaaagtgtatctaactctgattatgttgttaa 8101841  T
Q  125 cagtgatgaagaagagagtgatgacagttactttgtagaaagttgtatttggagaagctcctgatattgactgagattgcttaatctgcatttcattgct 224  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  8101840 cagtgatgaagaagagagtgatgacagttactttgtagaaagctgtatttggagaagctcctgatattgattgagattgcttaatctgcacttcattgct 8101741  T
Q  225 gtattttctgtactgctaagggaaaaactgttatagctcgaggatcacgtgctccaactaaaacccaagactcacaagcataggatccaatcacataatt 324  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8101740 gtattttctgtactgctaaggaaaaaactgttatagctcgaggatcacgtgctccaactaaaacccaagactcaaaagcataggatccaatcacataatt 8101641  T
Q  325 agttgcattttggattttgtgaagactcagttatgagc-ttttgtttgaagaaaaatactaacgactgcctctctg 399  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| ||||||| ||||    
T  8101640 agttgcattttggattttgtgaagactcagttatgagctttttgtttgaaggaaaatattaacaactgcctttctg 8101565  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 25775578 - 25775624
Alignment:
Q  25 tgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||||    
T  25775578 tgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 40052383 - 40052429
Alignment:
Q  25 tgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||| |||||| | |||||||||||| ||||||||||||||||||||    
T  40052383 tgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcat 40052429  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 25211606 - 25211647
Alignment:
Q  30 gacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||| |||||||||||||||| |||||| |||||||||    
T  25211606 gacaccaggacacgcctaatctgagaagtgtttgtgcttcat 25211647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 11610594 - 11610626
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||||||||||||| ||||||||||    
T  11610594 acacgcctaatctgaggagtgtccgtgcttcat 11610626  T

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Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 135333 - 135265
Alignment:
Q  8 gtaattatatgtgtcgatgtcg-----gacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||||||| |||||     |||||||| ||||||||||||||||| |||||||||||||||    
T  135333 gtaattatatgtgtcggtgtcgtgtccgacaccaggacacgcctaatctgaggcgtgttcgtgcttcat 135265  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 18513223 - 18513177
Alignment:
Q  25 tgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||| |||||||| |||||||||||||||||||||| ||||||||||    
T  18513223 tgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcat 18513177  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 20633535 - 20633588
Alignment:
Q  18 gtgtcgatgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||| ||||||||||||  ||||||||||||  |||||||||||||||||||    
T  20633535 gtgtcggtgtcggacaccaagacacgcctaatccaaggagtgttcgtgcttcat 20633588  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 22440621 - 22440559
Alignment:
Q  8 gtaattatatgtgtcgatgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    ||||||||||||| || |||| ||||| || |||||||||||| ||||||||| ||||||||||    
T  22440621 gtaattatatgtgacg-tgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 11596331 - 11596299
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||||||||||||| ||||||||||    
T  11596331 acacgcctaatctgaggagtgtccgtgcttcat 11596299  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 12895248 - 12895216
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||| ||||||||||||||||||||    
T  12895248 acacgcctaatccgaggagtgttcgtgcttcat 12895216  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 29205553 - 29205585
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||| ||||||||||||||||||||    
T  29205553 acacgcctaatccgaggagtgttcgtgcttcat 29205585  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 34306778 - 34306746
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||||||||| ||||||||||||||    
T  34306778 acacgcctaatctgaggaatgttcgtgcttcat 34306746  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 10535733 - 10535687
Alignment:
Q  25 tgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||||    
T  10535733 tgtctgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 10535687  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 11223841 - 11223795
Alignment:
Q  25 tgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||| |||||| | |||||||||||||||||||||| ||||||||||    
T  11223841 tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttcat 11223795  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 35056964 - 35056996
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||||||||||||| ||||||||||    
T  35056964 acacgcctaatctgaggagtgtccgtgcttcat 35056996  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 44635578 - 44635610
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||||||||||||| ||||||||||    
T  44635578 acacgcctaatctgaggagtgtccgtgcttcat 44635610  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 21924956 - 21924907
Alignment:
Q  8 gtaattatatgtgtcgatgtcggacaccagtacacgcctaatctgaggag 57  Q
    |||||||||||||||| ||||||||||| | |||||||||||| ||||||    
T  21924956 gtaattatatgtgtcggtgtcggacaccgggacacgcctaatccgaggag 21924907  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 5569825 - 5569866
Alignment:
Q  30 gacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||| | |||||||||||||||||||||| ||||||||||    
T  5569825 gacacctgaacacgcctaatctgaggagtgtccgtgcttcat 5569866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 426512 - 426480
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||||||||||||| ||||||||||    
T  426512 acacgcctaatctgaggagtgtccgtgcttcat 426480  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 7977804 - 7977772
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    ||||||||||||| |||||||||||||||||||    
T  7977804 acacgcctaatctaaggagtgttcgtgcttcat 7977772  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 12236744 - 12236776
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||| ||||||||||||||||||||||    
T  12236744 acacgcctaacctgaggagtgttcgtgcttcat 12236776  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 92892 - 92939
Alignment:
Q  24 atgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||| | |||||||||||| ||||||||| ||||||||||    
T  92892 atgtcggacacctggacacgcctaatccgaggagtgtccgtgcttcat 92939  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 28155608 - 28155671
Alignment:
Q  8 gtaattatatgtgtcgatgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    ||||||| | |||||| ||||||||||||| ||||||||||||  |||| ||| ||||||||||    
T  28155608 gtaattacaagtgtcggtgtcggacaccaggacacgcctaatccaaggaatgtccgtgcttcat 28155671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 35862023 - 35862068
Alignment:
Q  26 gtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    ||||||||| || |||||||||||| ||||||||| ||||||||||    
T  35862023 gtcggacacgaggacacgcctaatccgaggagtgtccgtgcttcat 35862068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 32093988 - 32093956
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||| ||||||||||||||||||||    
T  32093988 acacgcctaatccgaggagtgttcgtgcttcat 32093956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 2436982 - 2437028
Alignment:
Q  25 tgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||| |||||||  |||||||||||| ||||||||||||||||||||    
T  2436982 tgtccgacaccaagacacgcctaatccgaggagtgttcgtgcttcat 2437028  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 27932306 - 27932352
Alignment:
Q  25 tgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    ||||||||||||| |||||||||||  |||||||||| |||||||||    
T  27932306 tgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcat 27932352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 2218299 - 2218345
Alignment:
Q  25 tgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||| ||||| || |||||||||||||||||||||| ||||||||||    
T  2218299 tgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcat 2218345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 16297269 - 16297223
Alignment:
Q  25 tgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||| |||||||| |||||||||||| ||||||||| ||||||||||    
T  16297269 tgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 46940796 - 46940750
Alignment:
Q  25 tgtcggacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||| |||||| | |||||||||||| ||||||||||||||||||||    
T  46940796 tgtccgacaccggaacacgcctaatccgaggagtgttcgtgcttcat 46940750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 31694682 - 31694641
Alignment:
Q  30 gacaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||| | |||||||||||||||||||||| ||||||||||    
T  31694682 gacaccggaacacgcctaatctgaggagtgtccgtgcttcat 31694641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 9630595 - 9630563
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||| ||||||||||||||||||||    
T  9630595 acacgcctaatccgaggagtgttcgtgcttcat 9630563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 16812641 - 16812673
Alignment:
Q  39 acacgcctaatctgaggagtgttcgtgcttcat 71  Q
    |||||||||||||||||||||| ||||||||||    
T  16812641 acacgcctaatctgaggagtgtccgtgcttcat 16812673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 38078643 - 38078603
Alignment:
Q  31 acaccagtacacgcctaatctgaggagtgttcgtgcttcat 71  Q
    ||||||| |||||||||||| ||||||| ||||||||||||    
T  38078643 acaccaggacacgcctaatccgaggagtattcgtgcttcat 38078603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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