View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9043_high_1 (Length: 291)
Name: NF9043_high_1
Description: NF9043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9043_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 24317418 - 24317617
Alignment:
| Q |
9 |
ggataaaagtcaatacaatttgggtagccnnnnnnngtgaagaattactgtaagaatacctcatattgctcacgtactcctaagttgtccaaaatgtcac |
108 |
Q |
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| T |
24317418 |
ggataaaggtcaatacaatttgggtagccaaaaaaactgaagaattactgtaagaatacctcatattgcttacgtactcctaagttgcccaaaatgtcac |
24317517 |
T |
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| Q |
109 |
tattgtatacgatctcaagttgcgatgtgattctatttggagatagcatttgatccatttgggatttaaagtccaatccattcgcgagataacttatgtt |
208 |
Q |
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| T |
24317518 |
tattgtatacgatctcaagttgcgatgtgattctatttggagatagcatttgatccatttgggatttaaagtccaatccgttcgcgagataacttatgtt |
24317617 |
T |
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Back To:
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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 24318765 - 24318840
Alignment:
| Q |
201 |
cttatgttcctatcaggagttaaagaccaatggacctggataaaaaagatgagaatgacaaaatgccttttaattt |
276 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24318765 |
cttatgttcctatcaggagttaaagtccaacggacctggataaaaaagatgagaatgacaaaatgccttttaattt |
24318840 |
T |
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