View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9043_high_3 (Length: 290)
Name: NF9043_high_3
Description: NF9043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9043_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 28948901 - 28948626
Alignment:
| Q |
1 |
acagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgaga |
100 |
Q |
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| T |
28948901 |
acagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgaga |
28948802 |
T |
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| Q |
101 |
agaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaagaagatactagaatatctctcgtc |
200 |
Q |
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| T |
28948801 |
agaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaagaagatactagaatatctctcgtc |
28948702 |
T |
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| Q |
201 |
cagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatg |
276 |
Q |
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| T |
28948701 |
cagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatg |
28948626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 43015191 - 43015272
Alignment:
| Q |
97 |
gagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
178 |
Q |
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| T |
43015191 |
gagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaaga |
43015272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 34830046 - 34829870
Alignment:
| Q |
1 |
acagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgaga |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34830046 |
acagggaaaactagaccagttattattgaaggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgaga |
34829947 |
T |
|
| Q |
101 |
agaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaag |
177 |
Q |
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| T |
34829946 |
agaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaag |
34829870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 34814073 - 34813981
Alignment:
| Q |
184 |
ctagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatg |
276 |
Q |
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| T |
34814073 |
ctagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatg |
34813981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 30505888 - 30505976
Alignment:
| Q |
67 |
tacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaaga |
155 |
Q |
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||||| |||||||||| |||| ||||| ||||| || ||||||||||||||||| || || ||||| ||| |||||||||||||||| |
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| T |
30505888 |
tacacaaactatggaaaacaaagaaagccagagaaaacaaattgggtgatgcatcagtatcatcttgggagtgatgaagaagagaaaga |
30505976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 4235787 - 4235868
Alignment:
| Q |
97 |
gagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
178 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||| ||||||||||| | |||||| ||||| |||| |||||||| |
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| T |
4235787 |
gagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaattcgttgcttcaaaga |
4235868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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