View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9043_low_1 (Length: 487)
Name: NF9043_low_1
Description: NF9043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9043_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 28693878 - 28693417
Alignment:
| Q |
18 |
ctaactcacttgttcctacttacatggagctaatttgaatccaatatgtgctccttcctatctcaaattcaattactccatgcagttggaacatgtcaat |
117 |
Q |
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| T |
28693878 |
ctaactcacttgttcctacttacatggatctaatttgaatccaatatgtgctccttcctatctcaaattcaattactccatgcagttggaacatgtcaat |
28693779 |
T |
|
| Q |
118 |
aacaaactgaaccaaattaagagaggaaagatcgcaacaaccacagagcacatcatcagatacatcactataaatagagtgtctccttacatgtatgatc |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
28693778 |
aataaactgaaccaaattaagagaggaaagatcgcaac---cacagagcacatcatcagatacatcactataaataaagtgtctccttgcatgtatgatc |
28693682 |
T |
|
| Q |
218 |
acacatatattactcatcccacttttacttgtattgatatcgatctaccagcaccttacttatttggacaagcataccctggttcccctgtttggagaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28693681 |
acacatatattactcatcccacttttacttgtattgatatcgatctaccagcaccttacttatttggacaagcataccct----cccctgtttggagaag |
28693586 |
T |
|
| Q |
318 |
gagcatatgactagtcgaagtgaatctattcatcagtgtgaagaccacacctcctactcgattagaaggtacaccccacttgttagtacaagatcaagtt |
417 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28693585 |
gagcatatgactagtcgcagtgaatctgttcatcagtgtgaagaccacacctcctactcgattagaaggtacaccccacttgttaatacaagatcaagtt |
28693486 |
T |
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| Q |
418 |
agtttatgtgaaccgcatgaaccctctaatcattgaggcgttccaaagtgatcaacaaataggcatatg |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28693485 |
agtttatgtgaaccgcatgaaccctctaatcattgaggcgttccaaagtgatcaacaaataggcatatg |
28693417 |
T |
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