View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9043_low_4 (Length: 318)
Name: NF9043_low_4
Description: NF9043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9043_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 14259822 - 14260024
Alignment:
| Q |
18 |
attttgtggatgacttgaacgattttatactatctggatcttctgacaatgcatgtgtggtagtttttcttggaaagatcaagttatggaaaggtaagta |
117 |
Q |
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| T |
14259822 |
attttgtggatgacttgaacgattttatactatctggatcttctgacaatgcatgtgtggtagtttttcttggaaagatcaagttatggaaaggtaagta |
14259921 |
T |
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| Q |
118 |
attaacagatttcacaattttactaacaaaggttaagactcatatctaatgtatttaattaaattcagggatacctaccgttcagaatcacggtgcttct |
217 |
Q |
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| T |
14259922 |
attaacagatttcacaattttactaacaaaggttaagactcatatctaatgtatttaattaaattcagggatacctaccgttcagaatcacggtgcttat |
14260021 |
T |
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| Q |
218 |
acc |
220 |
Q |
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||| |
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| T |
14260022 |
acc |
14260024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 14260093 - 14260183
Alignment:
| Q |
215 |
tctaccgtttatttttattataaacaatgtataaaaagatattannnnnnnnaaaaatctattcaatttattttttatattcaggatgatg |
305 |
Q |
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| T |
14260093 |
tctaccgtttatttttattataaacaatgtataaaaagatattattttttataaaaatctattcaatttattttttatattcaggatgatg |
14260183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 14265350 - 14265444
Alignment:
| Q |
18 |
attttgtggatgacttgaacgattttatactatctggatcttctgacaatgcatgtgtggtagtttttcttggaaagatcaagttatggaaaggtaa |
114 |
Q |
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| T |
14265350 |
attttgtagatgacttgaccgattttatactat--ggatcttttgacaattcacgtgtggtggtttttcttggaaagatcgagttatggaaatgtaa |
14265444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 22146147 - 22146052
Alignment:
| Q |
19 |
ttttgtggatgacttgaacgattttatactatctggatcttctgacaatgcatgtgtggtagtttttcttggaaagatcaagttatggaaaggtaa |
114 |
Q |
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||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| |
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| T |
22146147 |
ttttgtggatgacttcaccgattttatactatcaggatcttctgacaatgcatgtgtggtagttttccttggaaagatcaaattatggtaaggtaa |
22146052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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