View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9043_low_8 (Length: 291)
Name: NF9043_low_8
Description: NF9043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9043_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 52 - 207
Target Start/End: Complemental strand, 43059194 - 43059042
Alignment:
| Q |
52 |
catgctttctcttttaatactacttcctagttcctccatcccacaatgagtgacataattaatttgactatttctattatttacattgcatagttttacc |
151 |
Q |
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| T |
43059194 |
catgctttctcttttaatactacttccgagttcctccatcccacaat--gtgaca----taatttgactatttctattatttacattgcatagttttacc |
43059101 |
T |
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| Q |
152 |
---attttcttctaatatataaagataaaatagaaacatataagatgtaatgttgttgg |
207 |
Q |
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| T |
43059100 |
ataattttcttctaatatataaagataaaagagtaacatataagatgtgatgttgttgg |
43059042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 43059414 - 43059370
Alignment:
| Q |
13 |
aaaacttaaacgataaccagtttgcattccttcttcatgcatgct |
57 |
Q |
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| T |
43059414 |
aaaacataaacgataaccagtttgcattccttcttcatgtatgct |
43059370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 256 - 291
Target Start/End: Complemental strand, 43058740 - 43058705
Alignment:
| Q |
256 |
gagaagtaatatactaaagtttaaagtcacttaatc |
291 |
Q |
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| T |
43058740 |
gagaagtaaaatactaaagtttaaagtcacttaatc |
43058705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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