View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9044_high_3 (Length: 305)
Name: NF9044_high_3
Description: NF9044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9044_high_3 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 3 - 289
Target Start/End: Complemental strand, 39092 - 38806
Alignment:
| Q |
3 |
ttgaggggttgtgataactgataaagtgctgatgaatgctaataccgttgctttgatggtattttcaaggccactacaaagctcctatctagtttctctt |
102 |
Q |
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| T |
39092 |
ttgaggggttgtgataactgataaagtgctgatgaatgctaataccgttgctttgatggtattttcaaggccactacaaagctcctatctagtttctctt |
38993 |
T |
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| Q |
103 |
tcggtgaaagaaaaaagctcctatcgcgtcaagcatgcattgtttgctagcattctaaaagtaccttgctctgaaatgtaagattttctgttttcagatt |
202 |
Q |
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| T |
38992 |
tcagtgaaagaaaaaagctcctatcgcgtcaagtatgcattgtttgctagcattataaaaataccttgctctgaaatgtaagattttctgttttcagatt |
38893 |
T |
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| Q |
203 |
tacttctatgaaaaattacctgtattttttagatagtcttacaaatgtatatttggtcatcagtctatgataattgcctaagttagt |
289 |
Q |
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| T |
38892 |
tacttctatgaaaaattacctgtattttttagatagtcttacaaatgtatatttggtcatcagtctatgataattgcctaagttagt |
38806 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 1508316 - 1508356
Alignment:
| Q |
124 |
tatcgcgtcaagcatgcattgtttgctagcattctaaaagt |
164 |
Q |
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| T |
1508316 |
tatcacgtcaaggatgcattgtttgctagtattctaaaagt |
1508356 |
T |
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