View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9044_high_4 (Length: 217)

Name: NF9044_high_4

Description: NF9044

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9044_high_4

[»] chr4 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 191; E-Value: 1e-104

Query Start/End: Original strand, 17 - 207

Target Start/End: Original strand, 5230500 - 5230690

Alignment:

Q	17	atgcaatgttgctaatggaaaatggatatttaacagttcaataaagcctttatactcagataaaagctgtccatacatagataaacaattttcttgtgtc	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5230500	atgcaatgttgctaatggaaaatggatatttaacagttcaataaagcctttatactcagataaaagctgtccatacatagataaacaattttcttgtgtc	5230599	T

Q	117	aagaatggaaggaatgattctgattatcttcattgggagtggcagccagaagattgtaccttgccacagtaagttttcacacactctaact	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5230600	aagaatggaaggaatgattctgattatcttcattgggagtggcagccagaagattgtaccttgccacagtaagttttcacacactctaact	5230690	T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 47; E-Value: 5e-18

Query Start/End: Original strand, 84 - 182

Target Start/End: Original strand, 25338328 - 25338426

Alignment:

Q	84	tgtccatacatagataaacaattttcttgtgtcaagaatggaaggaatgattctgattatcttcattgggagtggcagccagaagattgtaccttgcca	182	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	25338328	tgtccatatatagaaagacaattttcttgtataaaaaatggtagaacagattctgattatcaacattgggagtggcagccagaagattgcaccttgcca	25338426	T

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