View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9044_low_1 (Length: 686)

Name: NF9044_low_1
Description: NF9044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9044_low_1
NF9044_low_1
[»] chr3 (8 HSPs)
chr3 (1-669)||(49425842-49426511)
chr3 (10-219)||(49423694-49423904)
chr3 (417-669)||(49432497-49432752)
chr3 (29-234)||(43363144-43363344)
chr3 (210-291)||(49416720-49416802)
chr3 (91-146)||(17640994-17641049)
chr3 (588-667)||(17641083-17641162)
chr3 (634-667)||(49445331-49445364)
[»] chr8 (1 HSPs)
chr8 (582-669)||(25457687-25457774)
[»] chr1 (2 HSPs)
chr1 (582-669)||(1965622-1965709)
chr1 (635-667)||(41662531-41662563)


Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 669
Target Start/End: Original strand, 49425842 - 49426511
Alignment:
Q  1 tgttttataaaataatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaat 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49425842 tgttttatgaaataatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaat 49425941  T
Q  101 gtcttgaaagttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49425942 gtcttgaaagttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattca 49426041  T
Q  201 ttaagacagttcaaaagctcccttctcattctcatagcagtatttttcaaaacttatcagacattttagaagtcagttctcagttctcacacattttact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49426042 ttaagacagttcaaaagctcccttctcattctcatagcagtatttttcaaaacttatcagacattttagaagtcagttctcagttctcacacattttact 49426141  T
Q  301 ctcctatcatgtggtcattcatggaatcagaatttagcaaacaactaac--nnnnnnnntggataacatagattttgttgaagtaatgaacaagtnnnnn 398  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||          ||||||||||||||||||||||||||||||||||||         
T  49426142 ctcctatcatgtggtcattcatggaatcagaatttagcatacaactaacaaaaaaaaaatggataacatagattttgttgaagtaatgaacaagt-aaaa 49426240  T
Q  399 nnnnnnggtctaaagttaaaggataatttttcttaaacttgtgaactgatacaaaattcaagagcatcaaggttcactattcaaaccatcaaacctaaca 498  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49426241 aaaaaaggtctaaagttaaaggataatttttcttaaacttgtgaactgatacaaaattcaagagcatcaaggttcactattcaaaccatcaaacctaaca 49426340  T
Q  499 gttgcaaagtagaagtgaatagaagaactgctacttacatagaaccttgcttgcaatcgatcacaacttcacatataggggaggcccttgggcataataa 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49426341 gttgcaaagtagaagtgaatagaagaactgctacttacatagaacctcgcttgcaatcgatcacaacttcacatataggggaggcccttgggcataataa 49426440  T
Q  599 taactctctatatgttttgagctctttaccacaattgattttcatggtttgcaaaactcttgcattcttta 669  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49426441 taactctctatatgttttgagttctttaccacaattgattttcatggtttgcaaaactcttgcattcttta 49426511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 49423694 - 49423904
Alignment:
Q  10 aaataatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggc-gaaatcttaagagcgtaagaaatgctatccctaatgtcttgaa 108  Q
    ||||||||||||||||| |||||||||||||| ||| ||||| ||| || | |||| |||||  || |||| ||| ||||| ||||||||||||||||||    
T  49423694 aaataatttgctcgagtgcatgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttatccctaatgtcttgaa 49423793  T
Q  109 agttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagaca 208  Q
    ||||||| |||| |||||||||  || || |||||||| |  ||||||||| |||||||| |||  ||||||||| |||||||||||  |  ||||||||    
T  49423794 agttgaatctatcaaccatctccaactttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaatggcttgttaagaca 49423893  T
Q  209 gttcaaaagct 219  Q
    |||||||||||    
T  49423894 gttcaaaagct 49423904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 417 - 669
Target Start/End: Original strand, 49432497 - 49432752
Alignment:
Q  417 aaggataatttttcttaaacttgtgaactgatacaaaattcaagagcatcaaggttcactattcaaaccatcaaacctaacagttgcaaagtagaagtga 516  Q
    |||||||||||||| |  ||||||| || |||||||| ||||||| ||||||||||||| | ||||||  || ||||||||||||||||||||||||| |    
T  49432497 aaggataatttttcctggacttgtgcaccgatacaaagttcaagaacatcaaggttcacaactcaaactgtcgaacctaacagttgcaaagtagaagtta 49432596  T
Q  517 atagaagaactgc--tacttacata-gaaccttgcttgcaatcgatcacaacttcacatataggggaggcccttgggcataataataactctctatatgt 613  Q
    |||||||||||||  |||||||||| |    |||| |  |||   | | ||||||||||||||| || |||||  ||||||| | |||||||||  || |    
T  49432597 atagaagaactgctatacttacataggctgtttgcatttaataagtaataacttcacatataggagaagccctatggcataagagtaactctcttaatat 49432696  T
Q  614 tttgagctctttaccacaattgattttcatggtttgcaaaactcttgcattcttta 669  Q
    || ||  ||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  49432697 ttcgaagtctttaccacaatggattttcatggtttacaaaactcttgaattcttta 49432752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 29 - 234
Target Start/End: Complemental strand, 43363344 - 43363144
Alignment:
Q  29 atgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccatc 128  Q
    |||||||||||||||||  |||| ||| || | ||| |||| ||||||||| ||| ||||| ||||||| ||||||||||||||||| |||| || ||||    
T  43363344 atgaagttgtaacatga--ttgcaaatgtgcaatggtgaaagcttaagagcataa-aaatgttatcccttatgtcttgaaagttgaatctattaatcatc 43363248  T
Q  129 tcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagctcccttctca 228  Q
    || |||||  |||||||||| |  ||||||| |||||| |||||  || |||||| |||||||||||| ||||||||||| ||||||| || ||||||||    
T  43363247 tcctacat--agtttaaactggttgttgaacaattgaagtgaaacactaaacaagcttccccaaatgactcattaagacaattcaaaaacttccttctca 43363150  T
Q  229 ttctca 234  Q
    ||||||    
T  43363149 ttctca 43363144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 49416802 - 49416720
Alignment:
Q  210 ttcaaaagctcccttctcattctcatagcagtatttttcaaaac-ttatcagacattttagaagtcagttctcagttctcaca 291  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||| |||| |||| | |||||||| ||| |||||||||||||    
T  49416802 ttcaaaagctcccttgtcattctcattgcagtattttttaaaactttattagacttattagaagtgagtactcagttctcaca 49416720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 17640994 - 17641049
Alignment:
Q  91 tatccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaa 146  Q
    |||||||||  |||||||||||||| |||| |||||| || |||||||||||||||    
T  17640994 tatccctaaattcttgaaagttgaatctatcaaccatgtcctacatttagtttaaa 17641049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 667
Target Start/End: Original strand, 17641083 - 17641162
Alignment:
Q  588 gggcataataataactctctatatgttttgagctctttaccacaattgattttcatggtttgcaaaactcttgcattctt 667  Q
    ||||| || ||||||||||| | | ||||||| |||| ||  ||||  ||||||||||||||||||||| ||||||||||    
T  17641083 gggcacaagaataactctctttctattttgaggtcttcactgcaatgtattttcatggtttgcaaaacttttgcattctt 17641162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 634 - 667
Target Start/End: Original strand, 49445331 - 49445364
Alignment:
Q  634 tgattttcatggtttgcaaaactcttgcattctt 667  Q
    ||||| ||||||||||||||||||||||||||||    
T  49445331 tgattgtcatggtttgcaaaactcttgcattctt 49445364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 582 - 669
Target Start/End: Original strand, 25457687 - 25457774
Alignment:
Q  582 gcccttgggcataataataactctctatatgttttgagctctttaccacaattgattttcatggtttgcaaaactcttgcattcttta 669  Q
    |||||| ||||||| | |||||||||  || ||||||  |||| |||||||| |||||||||||||||||||||| ||| ||||||||    
T  25457687 gccctttggcataagagtaactctcttaatattttgaagtcttcaccacaatcgattttcatggtttgcaaaacttttgtattcttta 25457774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 582 - 669
Target Start/End: Complemental strand, 1965709 - 1965622
Alignment:
Q  582 gcccttgggcataataataactctctatatgttttgagctctttaccacaattgattttcatggtttgcaaaactcttgcattcttta 669  Q
    |||||| ||||||| | |||||||||  || ||||||  |||| |||||||| |||||||||||||||||||||| ||| ||||||||    
T  1965709 gccctttggcataagagtaactctcttaatattttgaagtcttcaccacaatcgattttcatggtttgcaaaacttttgtattcttta 1965622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 635 - 667
Target Start/End: Original strand, 41662531 - 41662563
Alignment:
Q  635 gattttcatggtttgcaaaactcttgcattctt 667  Q
    ||||||||||||||| |||||||||||||||||    
T  41662531 gattttcatggtttgtaaaactcttgcattctt 41662563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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