View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9044_low_3 (Length: 375)
Name: NF9044_low_3
Description: NF9044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9044_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 5 - 359
Target Start/End: Original strand, 48632887 - 48633236
Alignment:
| Q |
5 |
agaagcagagaaacaaggcatagcaggtcaggaatctgctcatattgacatccgaaaatggtctcatcatcacaaatactatacagcttgtgtgatattc |
104 |
Q |
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| T |
48632887 |
agaaccagacaaacaaggcatagcaggtcaggaatctgctcatattgacatccgaaaatggtctcatcatcacaaatactataccgcttgtgtgatatt- |
48632985 |
T |
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| Q |
105 |
tattctattcactttaaggttaaaaaccaaacttctacaactccattgaagtaagcatagtataagtgactgtgattacaatataaaaatacaaatagag |
204 |
Q |
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| T |
48632986 |
----ctattcactttaaggttaaaaaccaaacttctacaactccattgaagtaagcatagtataagtgactgtgattacaatataaaaatacaaatagag |
48633081 |
T |
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| Q |
205 |
catatggaagctgatggaactctagctaggacaaatgcactaaaaaattgtggggtcgttaggaatcaaaactcaaaatatcaagaattaacgtacactt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48633082 |
catatggaagctgatggaactctagctaggacaaatgcactaaaaaattgtggggtcgttaggaatcaaaactcaaaatatcaagaattaacgtacactt |
48633181 |
T |
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| Q |
305 |
caattatacaataatgtgtttgtgccctcttaaaagtcgttcattattatatatc |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48633182 |
caattatacaataatgtgtttgtgccctcttaaaagtcgttcattattatatatc |
48633236 |
T |
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