View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9044_low_5 (Length: 362)
Name: NF9044_low_5
Description: NF9044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9044_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 39857587 - 39857831
Alignment:
| Q |
17 |
aaatttctgcttacgtgtcaggataacaacattaacatttgtaatgattactagattgtataacagctattattttaagtttgatttgtaagcttggttc |
116 |
Q |
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| T |
39857587 |
aaatttctgcttacgtgtcaggataacaacattaacatttgtaatgattactagattgtataacagctattattttaagtttgatttgtaagcttggttc |
39857686 |
T |
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| Q |
117 |
acaaataaccgtaacgaagtctaacaattttctagttagttaaaaccaagtggcttttatgtttgacttgtaagcttcacaaattactgtaaccgaagtc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
39857687 |
acaaataaccgtaacgaagtctaacaattttctagttagttaaaaccaagtggcttttatgtttgacttgtaagcttcacaaat---tggaaccgaagtc |
39857783 |
T |
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| Q |
217 |
taaccgttttctagagagttagttagttaaactatagcaactacatat |
264 |
Q |
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| T |
39857784 |
taaccgttttctagagagttagttagttaaactatagcaactacatat |
39857831 |
T |
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Back To:
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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 19905089 - 19905160
Alignment:
| Q |
70 |
gattgtataacagctattattttaagtttgatttgtaagcttggttcacaaataaccgtaac-gaagtctaa |
140 |
Q |
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| T |
19905089 |
gattttatgacaactattcttttaagtttgatttgtacgcttgcttcacgaataaccgtaactgaagtctaa |
19905160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 32833190 - 32833154
Alignment:
| Q |
190 |
gcttcacaaattactgtaaccgaagtctaaccgtttt |
226 |
Q |
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| T |
32833190 |
gcttcacaaataactgtaaccgaagtctaaccgtttt |
32833154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 32833207 - 32833160
Alignment:
| Q |
95 |
gtttgatttgtaagcttggttcacaaataaccgtaa-cgaagtctaac |
141 |
Q |
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| T |
32833207 |
gtttgatttgtaagcttgcttcacaaataactgtaaccgaagtctaac |
32833160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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